FFCP PHASE1:Hg19::chr18:9538358..9538360,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:9538358..9538360,+ | |||
|description=CAGE_peak_at_chr18:9538358..9538360,+ | |description=CAGE_peak_at_chr18:9538358..9538360,+ | ||
|id=chr18:9538358..9538360,+ | |id=chr18:9538358..9538360,+ | ||
|ontology_enrichment_celltype=CL:0002159!8.01e-39!13;CL:0002251!1.37e-22!21;CL:0000622!8.13e-21!5;CL:0000362!6.37e-20!8;CL:0002076!1.69e-18!43;CL:0002077!9.30e-18!33;CL:0000154!2.21e-17!6;CL:0000240!3.81e-17!6;CL:0000311!3.81e-17!6;CL:0000079!3.81e-17!6;CL:0000237!3.81e-17!6;CL:0000036!3.81e-17!6;CL:0000357!3.81e-17!6;CL:0000114!3.81e-17!6;CL:0000317!2.08e-14!2;CL:1000448!2.08e-14!2;CL:0002308!2.08e-14!2;CL:0002140!2.08e-14!2;CL:0000575!5.88e-14!2;CL:0000223!7.20e-13!59;CL:0000076!2.22e-12!62;CL:0000312!7.88e-12!5;CL:0000066!8.55e-12!254;CL:0000150!1.22e-11!9;CL:0000221!2.36e-10!71;CL:0002166!7.69e-10!3;CL:0002623!3.39e-09!3;CL:0000220!7.79e-09!246;CL:0002321!9.97e-09!248;CL:0002336!5.22e-08!1;CL:0002261!5.22e-08!1;CL:0002170!5.22e-08!1;CL:0000244!2.47e-07!4;CL:0000731!2.47e-07!4 | |ontology_enrichment_celltype=CL:0002159!8.01e-39!13;CL:0002251!1.37e-22!21;CL:0000622!8.13e-21!5;CL:0000362!6.37e-20!8;CL:0002076!1.69e-18!43;CL:0002077!9.30e-18!33;CL:0000154!2.21e-17!6;CL:0000240!3.81e-17!6;CL:0000311!3.81e-17!6;CL:0000079!3.81e-17!6;CL:0000237!3.81e-17!6;CL:0000036!3.81e-17!6;CL:0000357!3.81e-17!6;CL:0000114!3.81e-17!6;CL:0000317!2.08e-14!2;CL:1000448!2.08e-14!2;CL:0002308!2.08e-14!2;CL:0002140!2.08e-14!2;CL:0000575!5.88e-14!2;CL:0000223!7.20e-13!59;CL:0000076!2.22e-12!62;CL:0000312!7.88e-12!5;CL:0000066!8.55e-12!254;CL:0000150!1.22e-11!9;CL:0000221!2.36e-10!71;CL:0002166!7.69e-10!3;CL:0002623!3.39e-09!3;CL:0000220!7.79e-09!246;CL:0002321!9.97e-09!248;CL:0002336!5.22e-08!1;CL:0002261!5.22e-08!1;CL:0002170!5.22e-08!1;CL:0000244!2.47e-07!4;CL:0000731!2.47e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002159;2.04e-56;14!CL:0000317;6.25e-45;2!CL:1000448;6.25e-45;2!CL:0002308;6.25e-45;2!CL:0002140;6.25e-45;2!CL:0002166;2.67e-30;3!CL:0002336;2.09e-23;1!CL:0002261;2.09e-23;1!CL:0002170;2.09e-23;1!CL:0000362;9.35e-23;9!CL:0002077;4.26e-21;34!CL:0000622;1.13e-18;5!CL:0000240;9.74e-16;6!CL:0000311;9.74e-16;6!CL:0000079;9.74e-16;6!CL:0000237;9.74e-16;6!CL:0000154;9.74e-16;6!CL:0000575;2.07e-12;2!CL:0000150;7.96e-11;9!CL:0000244;9.63e-07;4!CL:0000731;9.63e-07;4 | |ontology_enrichment_celltype_v019=CL:0002159;2.04e-56;14!CL:0000317;6.25e-45;2!CL:1000448;6.25e-45;2!CL:0002308;6.25e-45;2!CL:0002140;6.25e-45;2!CL:0002166;2.67e-30;3!CL:0002336;2.09e-23;1!CL:0002261;2.09e-23;1!CL:0002170;2.09e-23;1!CL:0000362;9.35e-23;9!CL:0002077;4.26e-21;34!CL:0000622;1.13e-18;5!CL:0000240;9.74e-16;6!CL:0000311;9.74e-16;6!CL:0000079;9.74e-16;6!CL:0000237;9.74e-16;6!CL:0000154;9.74e-16;6!CL:0000575;2.07e-12;2!CL:0000150;7.96e-11;9!CL:0000244;9.63e-07;4!CL:0000731;9.63e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.85e-56,14;CL:0000317,3.19e-45,2;CL:1000448,3.19e-45,2;CL:0002308,3.19e-45,2;CL:0002140,3.19e-45,2;CL:0002166,2.30e-30,3;CL:0002336,2.10e-23,1;CL:0002261,2.10e-23,1;CL:0002170,2.10e-23,1;CL:0002077,2.17e-23,34;CL:0000362,8.06e-23,9;CL:0000622,8.66e-19,5;CL:0000154,7.79e-16,6;CL:0000240,1.05e-15,6;CL:0000311,1.05e-15,6;CL:0000079,1.05e-15,6;CL:0000237,1.05e-15,6;CL:0000036,1.05e-15,6;CL:0000357,1.05e-15,6;CL:0000114,1.05e-15,6;CL:0000221,1.55e-14,72;CL:0000575,2.59e-12,2;CL:0000150,6.87e-11,9;CL:0000076,5.80e-09,63;CL:0000244,9.63e-07,4;CL:0000731,9.63e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000357;9.74e-16;6!CL:0000114;9.74e-16;6 | |ontology_enrichment_development_v019=CL:0000357;9.74e-16;6!CL:0000114;9.74e-16;6 | ||
|ontology_enrichment_disease=DOID:3151!7.26e-08!1;DOID:3149!7.26e-08!1;DOID:1749!3.66e-07!14 | |ontology_enrichment_disease=DOID:3151!7.26e-08!1;DOID:3149!7.26e-08!1;DOID:1749!3.66e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;5.13e-23;1!DOID:3149;5.13e-23;1!DOID:3451;3.24e-12;2!DOID:4159;3.24e-12;2!DOID:0060122;3.24e-12;2 | |ontology_enrichment_disease_v019=DOID:3151;5.13e-23;1!DOID:3149;5.13e-23;1!DOID:3451;3.24e-12;2!DOID:4159;3.24e-12;2!DOID:0060122;3.24e-12;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3151,6.40e-23,1;DOID:3149,6.40e-23,1;DOID:3451,3.62e-12,2;DOID:4159,3.62e-12,2;DOID:0060122,3.62e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0003729!6.76e-31!5;UBERON:0003343!1.21e-24!4;UBERON:0004785!1.21e-24!4;UBERON:0003102!1.32e-15!95;UBERON:0000974!4.31e-15!10;UBERON:0002419!2.08e-14!2;UBERON:0007771!2.08e-14!2;UBERON:0003297!2.08e-14!2;UBERON:0001821!2.08e-14!2;UBERON:0003487!2.08e-14!2;UBERON:0001820!2.08e-14!2;UBERON:0005089!2.08e-14!2;UBERON:0005088!2.08e-14!2;UBERON:0000166!1.49e-13!21;UBERON:0000165!4.56e-13!28;UBERON:0000930!4.56e-13!28;UBERON:0000344!8.41e-13!12;UBERON:0001003!2.65e-11!14;UBERON:0007376!2.65e-11!14;UBERON:0007383!2.65e-11!14;UBERON:0001444!2.68e-11!48;UBERON:0000161!4.57e-10!35;UBERON:0004121!3.65e-08!169;UBERON:0000924!6.74e-08!173;UBERON:0006601!6.74e-08!173;UBERON:0000989!1.22e-07!1;UBERON:0008811!1.22e-07!1;UBERON:0006258!1.22e-07!1;UBERON:0005876!1.22e-07!1;UBERON:0004874!1.22e-07!1;UBERON:0001708!1.39e-07!4;UBERON:0001704!1.39e-07!4;UBERON:0000964!2.11e-07!4;UBERON:0004348!2.11e-07!4;UBERON:0005427!2.11e-07!4 | |ontology_enrichment_uberon=UBERON:0003729!6.76e-31!5;UBERON:0003343!1.21e-24!4;UBERON:0004785!1.21e-24!4;UBERON:0003102!1.32e-15!95;UBERON:0000974!4.31e-15!10;UBERON:0002419!2.08e-14!2;UBERON:0007771!2.08e-14!2;UBERON:0003297!2.08e-14!2;UBERON:0001821!2.08e-14!2;UBERON:0003487!2.08e-14!2;UBERON:0001820!2.08e-14!2;UBERON:0005089!2.08e-14!2;UBERON:0005088!2.08e-14!2;UBERON:0000166!1.49e-13!21;UBERON:0000165!4.56e-13!28;UBERON:0000930!4.56e-13!28;UBERON:0000344!8.41e-13!12;UBERON:0001003!2.65e-11!14;UBERON:0007376!2.65e-11!14;UBERON:0007383!2.65e-11!14;UBERON:0001444!2.68e-11!48;UBERON:0000161!4.57e-10!35;UBERON:0004121!3.65e-08!169;UBERON:0000924!6.74e-08!173;UBERON:0006601!6.74e-08!173;UBERON:0000989!1.22e-07!1;UBERON:0008811!1.22e-07!1;UBERON:0006258!1.22e-07!1;UBERON:0005876!1.22e-07!1;UBERON:0004874!1.22e-07!1;UBERON:0001708!1.39e-07!4;UBERON:0001704!1.39e-07!4;UBERON:0000964!2.11e-07!4;UBERON:0004348!2.11e-07!4;UBERON:0005427!2.11e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002419;6.25e-45;2!UBERON:0007771;6.25e-45;2!UBERON:0003297;6.25e-45;2!UBERON:0001821;6.25e-45;2!UBERON:0003487;6.25e-45;2!UBERON:0001820;6.25e-45;2!UBERON:0001708;5.14e-23;4!UBERON:0008895;5.14e-23;4!UBERON:0011159;1.24e-18;5!UBERON:0001003;5.89e-14;15!UBERON:0007376;5.89e-14;15!UBERON:0003102;3.70e-10;50!UBERON:0011137;5.20e-09;11!UBERON:0010323;5.20e-09;11!UBERON:0002097;1.71e-07;41!UBERON:0002199;3.36e-07;46!UBERON:0002416;3.36e-07;46!UBERON:0010371;6.05e-07;31!UBERON:0000964;7.69e-07;4!UBERON:0010409;7.69e-07;4!UBERON:0000014;9.63e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0002419;6.25e-45;2!UBERON:0007771;6.25e-45;2!UBERON:0003297;6.25e-45;2!UBERON:0001821;6.25e-45;2!UBERON:0003487;6.25e-45;2!UBERON:0001820;6.25e-45;2!UBERON:0001708;5.14e-23;4!UBERON:0008895;5.14e-23;4!UBERON:0011159;1.24e-18;5!UBERON:0001003;5.89e-14;15!UBERON:0007376;5.89e-14;15!UBERON:0003102;3.70e-10;50!UBERON:0011137;5.20e-09;11!UBERON:0010323;5.20e-09;11!UBERON:0002097;1.71e-07;41!UBERON:0002199;3.36e-07;46!UBERON:0002416;3.36e-07;46!UBERON:0010371;6.05e-07;31!UBERON:0000964;7.69e-07;4!UBERON:0010409;7.69e-07;4!UBERON:0000014;9.63e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002419,3.19e-45,2;UBERON:0007771,3.19e-45,2;UBERON:0003297,3.19e-45,2;UBERON:0001821,3.19e-45,2;UBERON:0003487,3.19e-45,2;UBERON:0001820,3.19e-45,2;UBERON:0005089,3.19e-45,2;UBERON:0005088,3.19e-45,2;UBERON:0001708,4.60e-23,4;UBERON:0008895,4.60e-23,4;UBERON:0011159,1.13e-18,5;UBERON:0010188,9.74e-16,6;UBERON:0002539,9.74e-16,6;UBERON:0008816,9.74e-16,6;UBERON:0003102,4.51e-14,99;UBERON:0001003,5.39e-14,15;UBERON:0007376,5.39e-14,15;UBERON:0007383,5.39e-14,15;UBERON:0010323,5.00e-09,11;UBERON:0002097,5.18e-09,41;UBERON:0002199,4.54e-08,46;UBERON:0002416,4.54e-08,46;UBERON:0011137,2.77e-07,14;UBERON:0005085,4.39e-07,31;UBERON:0000964,8.61e-07,4;UBERON:0010409,8.61e-07,4;UBERON:0004348,8.61e-07,4;UBERON:0005427,8.61e-07,4 | |||
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|short_description=p@chr18:9538358..9538360,+ | |short_description=p@chr18:9538358..9538360,+ | ||
}} | }} |
Latest revision as of 22:07, 24 September 2015
Short description: | p@chr18:9538358..9538360, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:9538358..9538360, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.85e-56 | 14 |
sebum secreting cell | 3.19e-45 | 2 |
epithelial cell of sweat gland | 3.19e-45 | 2 |
epithelial cell of skin gland | 3.19e-45 | 2 |
acinar cell of sebaceous gland | 3.19e-45 | 2 |
epithelial cell of Malassez | 2.30e-30 | 3 |
buccal mucosa cell | 2.10e-23 | 1 |
endothelial cell of viscerocranial mucosa | 2.10e-23 | 1 |
keratinized cell of the oral mucosa | 2.10e-23 | 1 |
ecto-epithelial cell | 2.17e-23 | 34 |
epidermal cell | 8.06e-23 | 9 |
acinar cell | 8.66e-19 | 5 |
protein secreting cell | 7.79e-16 | 6 |
stratified squamous epithelial cell | 1.05e-15 | 6 |
keratin accumulating cell | 1.05e-15 | 6 |
stratified epithelial cell | 1.05e-15 | 6 |
keratinizing barrier epithelial cell | 1.05e-15 | 6 |
epithelial fate stem cell | 1.05e-15 | 6 |
stratified epithelial stem cell | 1.05e-15 | 6 |
surface ectodermal cell | 1.05e-15 | 6 |
ectodermal cell | 1.55e-14 | 72 |
corneal epithelial cell | 2.59e-12 | 2 |
glandular epithelial cell | 6.87e-11 | 9 |
squamous epithelial cell | 5.80e-09 | 63 |
transitional epithelial cell | 9.63e-07 | 4 |
urothelial cell | 9.63e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin gland | 3.19e-45 | 2 |
epidermis gland | 3.19e-45 | 2 |
gland of integumental system | 3.19e-45 | 2 |
sebaceous gland | 3.19e-45 | 2 |
skin sebaceous gland | 3.19e-45 | 2 |
sweat gland | 3.19e-45 | 2 |
sweat gland placode | 3.19e-45 | 2 |
sebaceous gland placode | 3.19e-45 | 2 |
jaw skeleton | 4.60e-23 | 4 |
splanchnocranium | 4.60e-23 | 4 |
primary subdivision of cranial skeletal system | 1.13e-18 | 5 |
protuberance | 9.74e-16 | 6 |
pharyngeal arch | 9.74e-16 | 6 |
embryonic head | 9.74e-16 | 6 |
surface structure | 4.51e-14 | 99 |
skin epidermis | 5.39e-14 | 15 |
outer epithelium | 5.39e-14 | 15 |
enveloping layer of ectoderm | 5.39e-14 | 15 |
cranial skeletal system | 5.00e-09 | 11 |
skin of body | 5.18e-09 | 41 |
integument | 4.54e-08 | 46 |
integumental system | 4.54e-08 | 46 |
axial skeletal system | 2.77e-07 | 14 |
ectodermal placode | 4.39e-07 | 31 |
cornea | 8.61e-07 | 4 |
eye surface | 8.61e-07 | 4 |
optic eminence | 8.61e-07 | 4 |
corneal primordium | 8.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 6.40e-23 | 1 |
keratoacanthoma | 6.40e-23 | 1 |
skin carcinoma | 3.62e-12 | 2 |
skin cancer | 3.62e-12 | 2 |
integumentary system cancer | 3.62e-12 | 2 |