FFCP PHASE1:Hg19::chr2:235936340..235936358,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:235936340..235936358,+ | |||
|description=CAGE_peak_at_chr2:235936340..235936358,+ | |description=CAGE_peak_at_chr2:235936340..235936358,+ | ||
|id=chr2:235936340..235936358,+ | |id=chr2:235936340..235936358,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.30e-16!254;CL:0000057!1.38e-13!75;CL:0000076!2.31e-13!62;CL:0002620!4.03e-12!23;CL:0000077!3.88e-11!19;CL:0000063!1.47e-10!578;CL:0000548!4.20e-10!679;CL:0000004!4.20e-10!679;CL:0000255!4.20e-10!679;CL:0000012!7.74e-10!682;CL:0002076!4.02e-07!43 | |ontology_enrichment_celltype=CL:0000066!1.30e-16!254;CL:0000057!1.38e-13!75;CL:0000076!2.31e-13!62;CL:0002620!4.03e-12!23;CL:0000077!3.88e-11!19;CL:0000063!1.47e-10!578;CL:0000548!4.20e-10!679;CL:0000004!4.20e-10!679;CL:0000255!4.20e-10!679;CL:0000012!7.74e-10!682;CL:0002076!4.02e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0002368;3.92e-10;13!CL:0000082;8.77e-07;19 | |ontology_enrichment_celltype_v019=CL:0002368;3.92e-10;13!CL:0000082;8.77e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.31e-11,253;CL:0002368,3.59e-10,13;CL:0002076,6.56e-07,42;CL:0000082,8.29e-07,19 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!9.93e-14!106;DOID:0050687!4.00e-12!143;DOID:162!1.07e-10!235;DOID:1749!1.77e-10!14;DOID:14566!5.15e-10!239;DOID:7!7.86e-09!39 | |ontology_enrichment_disease=DOID:305!9.93e-14!106;DOID:0050687!4.00e-12!143;DOID:162!1.07e-10!235;DOID:1749!1.77e-10!14;DOID:14566!5.15e-10!239;DOID:7!7.86e-09!39 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.93e-13;14!DOID:0050615;5.51e-08;16 | |ontology_enrichment_disease_v019=DOID:1749;2.93e-13;14!DOID:0050615;5.51e-08;16 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,3.13e-13,14;DOID:305,2.00e-10,106;DOID:0050687,6.77e-09,143;DOID:162,2.94e-08,235;DOID:0050615,5.47e-08,16;DOID:14566,5.61e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.58e-14!95;UBERON:0002097!1.49e-10!40;UBERON:0001004!6.09e-10!72;UBERON:0002199!1.52e-09!45;UBERON:0002416!1.52e-09!45;UBERON:0004119!3.29e-09!169;UBERON:0000925!3.29e-09!169;UBERON:0006595!3.29e-09!169;UBERON:0000475!8.97e-09!365;UBERON:0001007!5.38e-08!155;UBERON:0001555!5.38e-08!155;UBERON:0007026!5.38e-08!155 | |ontology_enrichment_uberon=UBERON:0003102!1.58e-14!95;UBERON:0002097!1.49e-10!40;UBERON:0001004!6.09e-10!72;UBERON:0002199!1.52e-09!45;UBERON:0002416!1.52e-09!45;UBERON:0004119!3.29e-09!169;UBERON:0000925!3.29e-09!169;UBERON:0006595!3.29e-09!169;UBERON:0000475!8.97e-09!365;UBERON:0001007!5.38e-08!155;UBERON:0001555!5.38e-08!155;UBERON:0007026!5.38e-08!155 | ||
|ontology_enrichment_uberon_v019=UBERON:0002294;3.92e-07;7!UBERON:0001173;3.92e-07;7!UBERON:0004802;8.77e-07;19!UBERON:0000115;8.77e-07;19 | |ontology_enrichment_uberon_v019=UBERON:0002294;3.92e-07;7!UBERON:0001173;3.92e-07;7!UBERON:0004802;8.77e-07;19!UBERON:0000115;8.77e-07;19 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000065,5.49e-08,54;UBERON:0004802,8.29e-07,19;UBERON:0000115,8.29e-07,19 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0,0,0.30120591877825,5.17655614233503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0.937285727335186,0,0,0,0.469737994575059,0.971237666208789,0.280901613404497,0,0.122834317311768,0.206651562351531,0,0.494533858557114,0.910161361938026,0,0.168336113954066,0,0,0.438977620880838,1.5324389789951,0.901428353439581,0.226864366320042,0.358779271377724,0.427114777637135,0.423863802319124,0.600182192168805,0.412210116953756,0.515281080091258,0.37223371266318,0.337552664482532,0.584622030967192,0.252433774244115,0.0920498986422993,0,0.355009592516614,1.10827308050404,0.508681776931463,0.193260853163297,0.272746120590835,0.573609190778008,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0.118306800039844,0.505754070234305,0.241011029883482,0.220587945464788,0.217879444092406,0.474541238222193,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62008766288098,0.502644862058154,0.185176890317059,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.708875486211932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.517086863031111,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.599837947092342,0,0,0,0.479249710983165,0,1.42636905040718,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0.306923946576125,0.280660094433074,0.384417447767103,0.511707249066704,0.160853921143607,0,0,0,0.246381468041427,0,0,0,0,3.22283461275637,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0.193341436584244,0.154048617114644,0,0,0,0,0.0852266274161009,0.178064071293475,2.31398881505369,2.88285101047659,0.382838137483752,3.8439956725109,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0.876901770507525,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0.349934720244983,0.865999014529609,0,3.26672954583968,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,1.66963057534359,0,0,0,0,0,1.1249555075237,0,0.933118762985422,1.88723537409386,4.29650819221462,0,0,0,0,0,0,0,0.7812832832557,0.0874599999961957,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0,0.300646838828985,0,0.664653872707185,0.330991955875499,2.19753042885058,1.19472429772959,0,0,0,0,0.783532859223623,0,0.171986032471617,0.19351266257817,0.146178634172371,0,0,0,0,0.274083849293502,0,0,0.195551382734803,1.76349404553374,0,0,0.432271251462318,0,0,4.46569873763264,0.372757606696298,0.942776138467182,0,0.313808538937,0,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0,0.179287339332845,2.49489756515279,0,0,0.25426853765475,0,0,0,0,0,0,0,0.146552233678082,0,0,0,2.9084762440336,0,0,0,0,0,0,0,3.19170628885091,0,0,0,0,2.19875734750328,0,0,0,0,0,0,0,0.124980407962107,0,0,0.941063278792687,0,0,0.149254802886874,0.233713309847224,0,0.189403005275089,0,0,0.686520205190771,0.151230923763239,0,0.147855149989634,0,0.449803112163605,0,0,0.53168342911599,0,0.150257608997218,0,0.406870733204662,0,0.429642228169954,0,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0.385239660814607,0.214441591374926,4.4369029634086,2.72047110614727,0.231522474323834,0.734210113519403,0.537266523244462,0.308801447160972,0.438568099157414,0.353378291891762,0.38582807654183,0.337884881306145,0.256241518587947,0,3.03859956177382,0,0,0,0,0,0,2.3244333569449,0,0,0,2.83757976783418,0.184105950251841,3.776746708425,0.622077260032973,0.127894371303652,0.107824811396682,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0.235939446695481,0.917142992608395,2.65709032145778,0.381382095467167,0.690359926060101,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0.548257766857182,0,0,0.894336993477167,0,0,0,0,0,0,0.171488009437418,0,0,0,0.667388411352415,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,2.7482065412268,0,0,0,0,0,0,1.19370465096821,0,0,0,2.56636834063345,0,0,0,0,1.88541237681301,0,0,0,0,0,0,0,3.03541695629618,4.94052820401969,3.61086150101257,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0.143444410785353,0,0.244209805832924,0,0,0.269475606319761,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0,0,0.30120591877825,5.17655614233503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0.937285727335186,0,0,0,0.469737994575059,0.971237666208789,0.280901613404497,0,0.122834317311768,0.206651562351531,0,0.494533858557114,0.910161361938026,0,0.168336113954066,0,0,0.438977620880838,1.5324389789951,0.901428353439581,0.226864366320042,0.358779271377724,0.427114777637135,0.423863802319124,0.600182192168805,0.412210116953756,0.515281080091258,0.37223371266318,0.337552664482532,0.584622030967192,0.252433774244115,0.0920498986422993,0,0.355009592516614,1.10827308050404,0.508681776931463,0.193260853163297,0.272746120590835,0.573609190778008,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0.118306800039844,0.505754070234305,0.241011029883482,0.220587945464788,0.217879444092406,0.474541238222193,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62008766288098,0.502644862058154,0.185176890317059,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.708875486211932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.517086863031111,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.599837947092342,0,0,0,0.479249710983165,0,1.42636905040718,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0.306923946576125,0.280660094433074,0.384417447767103,0.511707249066704,0.160853921143607,0,0,0,0.246381468041427,0,0,0,0,3.22283461275637,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0.193341436584244,0.154048617114644,0,0,0,0,0.0852266274161009,0.178064071293475,2.31398881505369,2.88285101047659,0.382838137483752,3.8439956725109,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0.876901770507525,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0.349934720244983,0.865999014529609,0,3.26672954583968,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,1.66963057534359,0,0,0,0,0,1.1249555075237,0,0.933118762985422,1.88723537409386,4.29650819221462,0,0,0,0,0,0,0,0.7812832832557,0.0874599999961957,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0,0.300646838828985,0,0.664653872707185,0.330991955875499,2.19753042885058,1.19472429772959,0,0,0,0,0.783532859223623,0,0.171986032471617,0.19351266257817,0.146178634172371,0,0,0,0,0.274083849293502,0,0,0.195551382734803,1.76349404553374,0,0,0.432271251462318,0,0,4.46569873763264,0.372757606696298,0.942776138467182,0,0.313808538937,0,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0.670869375198532,0,0,0,0.179287339332845,2.49489756515279,0,0,0.25426853765475,0,0,0,0,0,0,0,0.146552233678082,0,0,0,2.9084762440336,0,0,0,0,0,0,0,3.19170628885091,0,0,0,0,2.19875734750328,0,0,0,0,0,0,0,0.124980407962107,0,0,0.941063278792687,0,0,0.149254802886874,0.233713309847224,0,0.189403005275089,0,0,0.686520205190771,0.151230923763239,0,0.147855149989634,0,0.449803112163605,0,0,0.53168342911599,0,0.150257608997218,0,0.406870733204662,0,0.429642228169954,0,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0.385239660814607,0.214441591374926,4.4369029634086,2.72047110614727,0.231522474323834,0.734210113519403,0.537266523244462,0.308801447160972,0.438568099157414,0.353378291891762,0.38582807654183,0.337884881306145,0.256241518587947,0,3.03859956177382,0,0,0,0,0,0,2.3244333569449,0,0,0,2.83757976783418,0.184105950251841,3.776746708425,0.622077260032973,0.127894371303652,0.107824811396682,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0.235939446695481,0.917142992608395,2.65709032145778,0.381382095467167,0.690359926060101,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0.548257766857182,0,0,0.894336993477167,0,0,0,0,0,0,0.171488009437418,0,0,0,0.667388411352415,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,2.7482065412268,0,0,0,0,0,0,1.19370465096821,0,0,0,2.56636834063345,0,0,0,0,1.88541237681301,0,0,0,0,0,0,0,3.03541695629618,4.94052820401969,3.61086150101257,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0.143444410785353,0,0.244209805832924,0,0,0.269475606319761,0,0,0,0,0,0 | ||
|short_description=p@chr2:235936340..235936358,+ | |short_description=p@chr2:235936340..235936358,+ | ||
}} | }} |
Latest revision as of 08:04, 29 July 2015
Short description: | p@chr2:235936340..235936358, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:235936340..235936358, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.31e-11 | 253 |
respiratory epithelial cell | 3.59e-10 | 13 |
endo-epithelial cell | 6.56e-07 | 42 |
epithelial cell of lung | 8.29e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract | 5.49e-08 | 54 |
respiratory tract epithelium | 8.29e-07 | 19 |
lung epithelium | 8.29e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.13e-13 | 14 |
carcinoma | 2.00e-10 | 106 |
cell type cancer | 6.77e-09 | 143 |
cancer | 2.94e-08 | 235 |
respiratory system cancer | 5.47e-08 | 16 |
disease of cellular proliferation | 5.61e-08 | 239 |