FFCP PHASE1:Hg19::chr6:75898243..75898255,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1303 | |EntrezGene=1303 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2188 | |HGNC=2188 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003phu.1_5end | |association_with_transcript=0bp_to_uc003phu.1_5end | ||
|cluster_id=chr6:75898243..75898255,- | |||
|coexpression_cluster_id=C259 | |coexpression_cluster_id=C259 | ||
|description=CAGE_peak_9_at_COL12A1_5end | |description=CAGE_peak_9_at_COL12A1_5end | ||
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|ontology_enrichment_celltype=CL:0000057!3.75e-13!75;CL:0000055!2.49e-10!180;CL:0002620!2.65e-10!23;CL:0000499!3.51e-09!27;CL:0000723!1.11e-07!436;CL:0000048!2.11e-07!430;CL:0000153!3.90e-07!9;CL:0000447!3.90e-07!9;CL:0002320!3.95e-07!365;CL:0000034!4.23e-07!444;CL:0000136!4.54e-07!15;CL:0002334!6.23e-07!12 | |ontology_enrichment_celltype=CL:0000057!3.75e-13!75;CL:0000055!2.49e-10!180;CL:0002620!2.65e-10!23;CL:0000499!3.51e-09!27;CL:0000723!1.11e-07!436;CL:0000048!2.11e-07!430;CL:0000153!3.90e-07!9;CL:0000447!3.90e-07!9;CL:0002320!3.95e-07!365;CL:0000034!4.23e-07!444;CL:0000136!4.54e-07!15;CL:0002334!6.23e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002579;2.28e-18;3!CL:0002617;4.69e-13;2!CL:0002334;2.59e-12;12!CL:0000153;2.62e-10;9!CL:0000447;2.62e-10;9!CL:0000499;3.21e-09;28!CL:0000138;3.76e-09;6!CL:0002580;4.06e-09;3!CL:0000135;5.47e-09;3!CL:0000388;5.47e-09;3!CL:0002615;7.05e-09;3!CL:0002620;2.78e-08;23!CL:0000136;1.63e-07;13 | |ontology_enrichment_celltype_v019=CL:0002579;2.28e-18;3!CL:0002617;4.69e-13;2!CL:0002334;2.59e-12;12!CL:0000153;2.62e-10;9!CL:0000447;2.62e-10;9!CL:0000499;3.21e-09;28!CL:0000138;3.76e-09;6!CL:0002580;4.06e-09;3!CL:0000135;5.47e-09;3!CL:0000388;5.47e-09;3!CL:0002615;7.05e-09;3!CL:0002620;2.78e-08;23!CL:0000136;1.63e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0002579,1.39e-18,3;CL:0000057,5.37e-14,76;CL:0000136,1.24e-13,15;CL:0002617,4.17e-13,2;CL:0002334,1.95e-12,12;CL:0000153,2.62e-10,9;CL:0000447,2.62e-10,9;CL:0000058,3.51e-09,6;CL:0000138,3.51e-09,6;CL:0002580,3.54e-09,3;CL:0000499,3.55e-09,28;CL:0000135,5.47e-09,3;CL:0000388,5.47e-09,3;CL:0002615,8.41e-09,3;CL:0002620,2.51e-08,23;CL:0000134,5.93e-08,354;CL:0002320,1.10e-07,361;CL:0000219,9.52e-07,386 | |||
|ontology_enrichment_development_v019=UBERON:0000358;3.39e-07;1 | |ontology_enrichment_development_v019=UBERON:0000358;3.39e-07;1 | ||
|ontology_enrichment_disease=DOID:17!1.27e-07!5;DOID:450!1.27e-07!5;DOID:66!1.27e-07!5;DOID:423!1.27e-07!5;DOID:0080000!1.27e-07!5;DOID:11722!1.27e-07!5 | |ontology_enrichment_disease=DOID:17!1.27e-07!5;DOID:450!1.27e-07!5;DOID:66!1.27e-07!5;DOID:423!1.27e-07!5;DOID:0080000!1.27e-07!5;DOID:11722!1.27e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:4235;6.68e-07;1 | |ontology_enrichment_disease_v019=DOID:4235;6.68e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:4235,8.67e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002199!7.17e-11!45;UBERON:0002416!7.17e-11!45;UBERON:0003688!7.37e-10!6;UBERON:0002358!7.37e-10!6;UBERON:0003684!7.37e-10!6;UBERON:0001178!7.37e-10!6;UBERON:0002097!1.08e-09!40;UBERON:0004457!6.22e-09!12;UBERON:0000042!6.22e-09!12;UBERON:0003102!1.76e-08!95;UBERON:0002384!8.38e-07!375 | |ontology_enrichment_uberon=UBERON:0002199!7.17e-11!45;UBERON:0002416!7.17e-11!45;UBERON:0003688!7.37e-10!6;UBERON:0002358!7.37e-10!6;UBERON:0003684!7.37e-10!6;UBERON:0001178!7.37e-10!6;UBERON:0002097!1.08e-09!40;UBERON:0004457!6.22e-09!12;UBERON:0000042!6.22e-09!12;UBERON:0003102!1.76e-08!95;UBERON:0002384!8.38e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.55e-24;6!UBERON:0002358;1.55e-24;6!UBERON:0003684;1.55e-24;6!UBERON:0001178;1.55e-24;6!UBERON:0004457;6.09e-23;9!UBERON:0000042;6.09e-23;9!UBERON:0000310;6.89e-10;10!UBERON:0001443;5.39e-09;11!UBERON:0007846;5.47e-09;3!UBERON:0000043;5.47e-09;3!UBERON:0007845;5.47e-09;3 | |ontology_enrichment_uberon_v019=UBERON:0003688;1.55e-24;6!UBERON:0002358;1.55e-24;6!UBERON:0003684;1.55e-24;6!UBERON:0001178;1.55e-24;6!UBERON:0004457;6.09e-23;9!UBERON:0000042;6.09e-23;9!UBERON:0000310;6.89e-10;10!UBERON:0001443;5.39e-09;11!UBERON:0007846;5.47e-09;3!UBERON:0000043;5.47e-09;3!UBERON:0007845;5.47e-09;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.28e-24,6;UBERON:0002358,1.28e-24,6;UBERON:0003684,1.28e-24,6;UBERON:0001178,1.28e-24,6;UBERON:0004457,4.29e-17,12;UBERON:0000042,4.29e-17,12;UBERON:0000310,6.08e-10,10;UBERON:0001443,4.81e-09,11;UBERON:0007846,5.47e-09,3;UBERON:0000043,5.47e-09,3;UBERON:0007845,5.47e-09,3;UBERON:0002384,2.53e-07,371;UBERON:0004923,4.73e-07,66 | |||
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| ||
|short_description=p9@COL12A1 | |short_description=p9@COL12A1 | ||
}} | }} |
Latest revision as of 20:26, 19 September 2015
Short description: | p9@COL12A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL12A1_5end |
Coexpression cluster: | C259_Preadipocyte_Adipocyte_Fibroblast_Chondrocyte_tenocyte_normal_Ewing |
Association with transcript: | 0bp_to_uc003phu.1_5end |
EntrezGene: | COL12A1 |
HGNC: | 2188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
omentum preadipocyte | 1.39e-18 | 3 |
fibroblast | 5.37e-14 | 76 |
fat cell | 1.24e-13 | 15 |
adipocyte of breast | 4.17e-13 | 2 |
preadipocyte | 1.95e-12 | 12 |
GAG secreting cell | 2.62e-10 | 9 |
carbohydrate secreting cell | 2.62e-10 | 9 |
chondroblast | 3.51e-09 | 6 |
chondrocyte | 3.51e-09 | 6 |
preadipocyte of the breast | 3.54e-09 | 3 |
stromal cell | 3.55e-09 | 28 |
fibrocyte | 5.47e-09 | 3 |
tendon cell | 5.47e-09 | 3 |
adipocyte of omentum tissue | 8.41e-09 | 3 |
skin fibroblast | 2.51e-08 | 23 |
mesenchymal cell | 5.93e-08 | 354 |
connective tissue cell | 1.10e-07 | 361 |
motile cell | 9.52e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.28e-24 | 6 |
peritoneum | 1.28e-24 | 6 |
abdominal cavity | 1.28e-24 | 6 |
visceral peritoneum | 1.28e-24 | 6 |
cavity lining | 4.29e-17 | 12 |
serous membrane | 4.29e-17 | 12 |
breast | 6.08e-10 | 10 |
chest | 4.81e-09 | 11 |
dense regular connective tissue | 5.47e-09 | 3 |
tendon | 5.47e-09 | 3 |
regular connective tissue | 5.47e-09 | 3 |
connective tissue | 2.53e-07 | 371 |
organ component layer | 4.73e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 8.67e-07 | 1 |