FFCP PHASE1:Hg19::chr5:174151553..174151610,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4488 | |EntrezGene=4488 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7392 | |HGNC=7392 | ||
|TSSclassifier=strong | |||
|UniProt=D6RIS4,P35548 | |UniProt=D6RIS4,P35548 | ||
|association_with_transcript=0bp_to_ENST00000507785,NM_002449,uc003mcy.2_5end | |association_with_transcript=0bp_to_ENST00000507785,NM_002449,uc003mcy.2_5end | ||
|cluster_id=chr5:174151553..174151610,+ | |||
|coexpression_cluster_id=C2819 | |coexpression_cluster_id=C2819 | ||
|description=CAGE_peak_1_at_MSX2_5end | |description=CAGE_peak_1_at_MSX2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000055!3.89e-07!180 | |ontology_enrichment_celltype=CL:0000055!3.89e-07!180 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.00e-08,253 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:0050687!3.55e-07!143 | |ontology_enrichment_disease=DOID:0050687!3.55e-07!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.11e-09,143;DOID:305,2.43e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.86e-11!95;UBERON:0000475!9.59e-09!365;UBERON:0004923!5.07e-08!57 | |ontology_enrichment_uberon=UBERON:0003102!1.86e-11!95;UBERON:0000475!9.59e-09!365;UBERON:0004923!5.07e-08!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.06e-07;24 | |ontology_enrichment_uberon_v019=UBERON:0000478;8.06e-07;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.46e-09,99;UBERON:0005631,4.94e-07,14;UBERON:0000158,4.94e-07,14;UBERON:0000478,7.90e-07,24 | |||
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|phase1_expression=0.54503513781167,0.642301571672949,0.845726424575827,1.0007329835313,0.446961094427288,0.872338524100369,2.53299878168311,5.68547886084148,2.35067065379855,0,3.48900583986214,9.61142037372758,7.91300934685361,0,0,2.01697543935533,1.80808358407193,1.46062018077475,1.46379839637152,22.2849115118986,5.71201935483908,11.2843699732112,0.85870796139317,0.273748850145768,0.125542639594803,0,0,0,0.393364276848904,0,1.08371286321253,0,0,0,0,0,0,1.10799081706375,0,0.434021741431704,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0.209658645508376,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0.196709770113833,0,0.616804496998528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,1.34140171940727,0.895037932904712,0,1.00267582127178,2.17269778441236,0,1.94653948121054,0.378139268656271,0.665188192387692,0.351339142772504,2.5540919722054,3.27865759463288,3.33705998505986,0,0,0,0,0,0,0.198762407366705,2.58070378531837,0,0,1.25849830862972,0.825354125820202,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0,0,0,0,3.97577561356255,0.379891534993739,0.926864265692532,0,0.354668382198357,2.80338800071154,3.20246987189115,2.22000793575444,0.622422070799533,1.34710672069688,0.326923806226917,1.96764655938411,2.30470369792,1.40592859100278,7.17968176709737,3.4228309292667,11.9558944441441,0.704606991862589,0.323745888736263,0.561803226808994,1.83738754129404,0.737005903870608,1.65321249881225,8.31602000097437,8.90160945402805,0,0,2.69337782326506,2.12701483782339,1.93944880838928,7.02364193409341,6.12975591598039,5.25833206173089,0.794025282120147,1.97328599257748,3.20336083227851,1.27159140695737,2.10063767259082,1.54578793857658,0.515281080091258,2.79175284497385,0.843881661206331,0.584622030967192,0.504867548488229,0.920498986422993,1.13152239773168,1.06502877754984,1.91428986632517,0.847802961552438,0.966304265816484,2.45471508531751,1.72082757233402,2.6834215348511,1.72288698817931,6.9716365721711,12.5429876568598,6.05570042101508,0.36497735907583,9.38697193978896,23.1566737749439,6.90674606762403,2.3218396401599,2.88751792667834,0,0,0,0,0.217879444092406,0,0,0,0,0,2.80483547606892,0.4115740113314,0,0,0,0,0,8.60919069801795,0.857839051492628,3.73150970389327,2.24803506515239,2.71428225511403,0.555530670951178,2.28065813717227,2.07986957055916,0,1.27523445472584,0.70445216541493,0.288732895522148,0,0,21.3355187449004,27.4715571870359,0,0,0,0,3.86358894857377,0.850650583454319,1.97028749946266,0.871901815541886,3.4504441124869,9.85326475791887,1.32072651019839,3.31724984865235,4.90007841617669,4.67097003677606,2.34942208881025,3.81988425558278,0,1.71072446022705,1.13110241973656,1.8020583470635,1.42913216315289,1.79409734952577,1.30788020649984,1.0267360014933,0.517086863031111,10.7296933755565,3.381211010224,0,0,1.54324424557285,0,0.799266537048298,0.428933980974443,1.62786481617433,1.64648067356154,1.30294473717494,0,2.37585561880029,4.22015127883421,3.48613383440118,4.29883862082845,0,0,0,0,0,0,1.88215698667853,1.2328579353023,6.26713371339634,0,0,0.215627574859517,0.256686072559497,2.7950408664471,1.30139853857622,3.09315525111078,0.335032530668698,1.27587750330633,0,0,0,0,0,0,0.207970861530807,1.60586089917446,1.89242898040722,0.585707074963566,2.10662269809403,4.5481500811197,1.03473071292505,3.32112799267718,2.94990669666725,1.65078867489357,1.95801157462741,1.02943027143257,0,0,0.106727557803444,16.368888858098,6.65741758041988,17.5386370131215,0.992431231275107,1.68808170616869,0.280660094433074,0.512556597022804,0.511707249066704,0.160853921143607,0,0.925258162815933,1.06537035187876,0,0.519254429183621,0.232420756919918,13.8988367030366,2.00506470303285,2.5782676902051,17.6814250173494,3.27764102412091,3.8026080338233,1.35359883872224,0.924184045252977,1.56869953835371,1.46139224653261,1.05551628892876,0,0,0,0,0,1.00337954770971,0.254876273045038,0,0.671624264166535,0,0,4.87255237721139,5.24823433119529,2.27764876265012,6.28550171051106,9.98107166519943,9.15855449118527,8.61398306994258,3.90036147621913,0,1.25671933779759,0,0.767518373630648,0.275673144969061,0.966782203814463,0.435050081742686,0.340906509664404,0.890320356467374,0.330569830721956,0.192190067365106,0,0.30347334256665,0.464845549297286,0,0.6970372701606,0.924100740528266,4.25844824253617,0.869932992075073,1.8532421910392,0.286249773483982,2.60510858551767,0.632758849437452,0.38126038784765,0.767693373934002,2.56763392820352,1.90921948755562,3.92474320099615,0.359744915166629,0.54907405947211,0.471249609382746,2.22400729730648,0,6.31887684358472,0.48763373908959,2.68084838594413,0,0.545999645631943,4.3835683905651,5.65040583101214,0.551365343546124,2.65375590096488,1.75380354101505,0.578775534266688,2.62357900818653,1.82619339266434,0.6196469961995,0.563391205064483,1.29070216983646,0.88424136911809,3.21003946333125,1.06428319221179,2.74439925886963,10.8667314676768,0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| ||
|short_description=p1@MSX2 | |short_description=p1@MSX2 | ||
}} | }} |
Latest revision as of 03:04, 17 September 2015
Short description: | p1@MSX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MSX2_5end |
Coexpression cluster: | C2819_choriocarcinoma_small_synovial_pancreatic_teratocarcinoma_cholangiocellular_Wilms |
Association with transcript: | 0bp_to_ENST00000507785, NM_002449, uc003mcy.2_5end |
EntrezGene: | MSX2 |
HGNC: | 7392 |
UniProt: | D6RIS4P35548 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.00e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.46e-09 | 99 |
extraembryonic membrane | 4.94e-07 | 14 |
membranous layer | 4.94e-07 | 14 |
extraembryonic structure | 7.90e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.11e-09 | 143 |
carcinoma | 2.43e-07 | 106 |