FFCP PHASE1:Hg19::chr4:39367916..39367921,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5981 | |EntrezGene=5981 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9969 | |HGNC=9969 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_ENST00000504849_5end | |association_with_transcript=33bp_to_ENST00000504849_5end | ||
|cluster_id=chr4:39367916..39367921,- | |||
|coexpression_cluster_id=C33 | |coexpression_cluster_id=C33 | ||
|description=CAGE_peak_14_at_RFC1_5end | |description=CAGE_peak_14_at_RFC1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000764;7.41e-67;2!CL:0000558;7.41e-67;2!CL:0002615;2.74e-12;3!CL:0000307;2.74e-12;3 | |ontology_enrichment_celltype_v019=CL:0000764;7.41e-67;2!CL:0000558;7.41e-67;2!CL:0002615;2.74e-12;3!CL:0000307;2.74e-12;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000764,7.41e-67,2;CL:0000765,7.41e-67,2;CL:0000050,7.41e-67,2;CL:0000038,7.41e-67,2;CL:0000558,7.41e-67,2;CL:0000547,7.41e-67,2;CL:0000549,7.41e-67,2;CL:0000550,7.41e-67,2;CL:0000552,7.41e-67,2;CL:0000068,2.89e-12,3;CL:0000069,2.89e-12,3;CL:0000307,2.89e-12,3;CL:0000377,2.89e-12,3;CL:0002615,3.24e-12,3 | |||
|ontology_enrichment_development_v019=CL:0000377;2.74e-12;3 | |ontology_enrichment_development_v019=CL:0000377;2.74e-12;3 | ||
|ontology_enrichment_disease=DOID:1036!8.30e-08!8 | |ontology_enrichment_disease=DOID:1036!8.30e-08!8 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;8.72e-07;6!UBERON:0002358;8.72e-07;6!UBERON:0003684;8.72e-07;6!UBERON:0001178;8.72e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0003688;8.72e-07;6!UBERON:0002358;8.72e-07;6!UBERON:0003684;8.72e-07;6!UBERON:0001178;8.72e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,9.49e-07,6;UBERON:0002358,9.49e-07,6;UBERON:0003684,9.49e-07,6;UBERON:0001178,9.49e-07,6 | |||
|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0,0,0.383829398097213,0,0,0,0,0.619737604642413,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0.32592226663359,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0.474541238222193,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.0920809889358963,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94667777962682,4.44440266742331,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355709216742071,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,0,0.270455678475983,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0.102268682502155,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.520874984799877,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0.31396051279005,0,0.225595660617181,0,0.671286347903371,0.189753732724185,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0.30607276163049,0,1.50323419414493,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0.343189995723929,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.315132729228895,0.0824158583811665,0.26961417541674,0,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.124192805882767,0.691743174681154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0.260994291965212,0.226705925512272,0,0,0.179088841081487,0.308801447160972,0,0,0,0.168942440653073,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0.314531883711793,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0.523813388962845,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0.790068058663633,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0.103432995861895,0.213233981900981,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0,0,0.383829398097213,0,0,0,0,0.619737604642413,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0.32592226663359,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0.474541238222193,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.0920809889358963,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94667777962682,4.44440266742331,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355709216742071,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,0,0.270455678475983,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0.102268682502155,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.520874984799877,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0.31396051279005,0,0.225595660617181,0,0.671286347903371,0.189753732724185,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0.30607276163049,0,1.50323419414493,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0.343189995723929,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.315132729228895,0.0824158583811665,0.26961417541674,0,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.124192805882767,0.691743174681154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0.260994291965212,0.226705925512272,0,0,0.179088841081487,0.308801447160972,0,0,0,0.168942440653073,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0.314531883711793,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0.523813388962845,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0.790068058663633,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0.103432995861895,0.213233981900981,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p14@RFC1 | |short_description=p14@RFC1 | ||
}} | }} |
Latest revision as of 16:56, 17 September 2015
Short description: | p14@RFC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_RFC1_5end |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | 33bp_to_ENST00000504849_5end |
EntrezGene: | RFC1 |
HGNC: | 9969 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 7.41e-67 | 2 |
erythroblast | 7.41e-67 | 2 |
megakaryocyte-erythroid progenitor cell | 7.41e-67 | 2 |
erythroid progenitor cell | 7.41e-67 | 2 |
reticulocyte | 7.41e-67 | 2 |
proerythroblast | 7.41e-67 | 2 |
basophilic erythroblast | 7.41e-67 | 2 |
polychromatophilic erythroblast | 7.41e-67 | 2 |
orthochromatic erythroblast | 7.41e-67 | 2 |
duct epithelial cell | 2.89e-12 | 3 |
branched duct epithelial cell | 2.89e-12 | 3 |
tracheal epithelial cell | 2.89e-12 | 3 |
tracheoblast | 2.89e-12 | 3 |
adipocyte of omentum tissue | 3.24e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 9.49e-07 | 6 |
peritoneum | 9.49e-07 | 6 |
abdominal cavity | 9.49e-07 | 6 |
visceral peritoneum | 9.49e-07 | 6 |