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MacroAPE 1083:3-CCCCCCTTTTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;72.744;1264.36;185.324;209.572!2;98.724;1321.516;143.756;168.004!3;133.364;1288.608;126.436;183.592!4;81.404;1087.696;251.14;311.76!5;117.77...")
 
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0.671511!10455-106G5;0.000226195!10534-107G3;0.441756!10429-106D6;0.113484!10464-106H5;0.892642!10827-111C8;0.500451!10789-110H6;0.472919!10828-111C9;0.379594!10788-110H5;0.998997!10792-110H9;0.897042!10765-110E9;0.51544!10829-111D1;0.790149!10830-111D2;0.528804!10831-111D3;0.151063!10832-111D4;0.867014!10833-111D5;0.358143!10764-110E8;0.607208!10770-110F5;0.992472!10399-106A3;0.729093!10400-106A4;0.859653!10405-106A9;0.759767!10834-111D6;0.897113!10835-111D7;0.964965!10836-111D8;0.0726097!10837-111D9;0.96813!10699-109G6;0.986755!10802-111A1;0.43373!10796-110I4;0.229126!10010-101C1;0.000465587!10810-111A9;0.260863!10421-106C7;0.0516839!10708-109H6;0.291263!12235-129G3;0.167777!12236-129G4;0.753533!12237-129G5;0.518696!10167-103B5;0.862146!10151-102I7;0.480371!10428-106D5;0.149025!10795-110I3;0.439454!10805-111A4;0.173704!10052-101G7;0.0660399!10189-103D9;0.265374!10589-108D4;0.552752!10425-106D2;0.0226387!10427-106D4;0.860938!10702-109G9;0.83583!10432-106D9;0.673686!10496-107C1;0.139469!10718-109I7;0.953811!10011-101C2;0.844416!10053-101G8;0.0230041!10686-109F2;0.448569!10084-102B3;0.527487!10012-101C3;0.272546!10085-102B4;0.203265!10482-107A5;0.334601!10419-106C5;0.459735!10080-102A8;0.497296!10760-110E4;0.746188!10709-109H7;0.410753!10710-109H8;0.097741!10703-109H1;0.0386732!10719-109I8;0.0571786!10642-109A3;0.293734!10177-103C6;0.513568!10164-103B2;0.347639!10173-103C2;0.233303!10166-103B4;0.293292!10083-102B2;0.0612626!10188-103D8;0.263584!10552-107I3;0.24791!10553-107I4;0.000789007!10013-101C4;0.121751!10536-107G5;0.00279904!10618-108G6;0.901538!10423-106C9;0.010493!10785-110H2;0.00234756!12238-129G6;0.0120252!12239-129G7;0.789734!12240-129G8;0.762735!10416-106C2;0.732046!10801-110I9;0.20473!10766-110F1;0.713148!10824-111C5;0.387581!10825-111C6;0.0235486!10826-111C7;0.0297694!10454-106G4;0.0676157!10409-106B4;0.0183694!10638-108I8;0.691956!10636-108I6;0.00552907!10513-107D9;0.0377963!10420-106C6;4.39199e-07!10082-102B1;0.406221!10014-101C5;0.27338!10070-101I7;0.723556!10452-106G2;0.965758!10453-106G3;0.995442!10449-106F8;0.751542!10042-101F6;0.879148!10069-101I6;0.572659!10193-103E4;0.75944!10631-108I1;0.35435!10438-106E6;0.0384284!10488-107B2;0.351231!10196-103E7;0.0818874!10071-101I8;0.00708879!10071-101I8;0.753909!10041-101F5;0.251865!10451-106G1;0.0948197!10450-106F9;0.0673232!10604-108F1;0.218679!10605-108F2;0.338625!10606-108F3;0.419277!10603-108E9;0.0506699!10497-107C2;0.207544!10448-106F7;0.334173!10643-109A4;0.0158116!10426-106D3;0.00139051!10431-106D8;0.585188!10197-103E8;0.159682!10443-106F2;0.150964!10815-111B5;0.0745295!10816-111B6;0.0213915!10817-111B7;0.0306429!10015-101C6;0.0204509!10410-106B5;0.13503!10054-101G9;0.827891!10758-110E2;0.464978!10711-109H9;0.307404!10040-101F4;0.408354!10470-106I2;0.190225!10415-106C1;0.031168!10198-103E9;0.205342!10614-108G2;0.191585!10612-108F9;0.000429817!10549-107H9;0.00831837!10615-108G3;0.0510898!10487-107B1;0.343183!10433-106E1;0.00293651!10688-109F4;0.00850868!10444-106F3;0.972249!10444-106F3;0.453423!10485-107A8;0.267912!10413-106B8;0.312784!10175-103C4;0.859961!10161-103A8;0.905061!12131-128D7;0.355326!10624-108H3;0.262523!10712-109I1;0.350909!10205-103F7;0.787459!10206-103F8;0.174194!10207-103F9;0.0102044!10050-101G5;0.0046364!10051-101G6;0.207353!10016-101C7;0.219588!10046-101G1;0.0762644!10778-110G4;0.284333!10633-108I3;0.756304!10818-111B8;0.234002!10819-111B9;0.0098636!10820-111C1;0.0156019!10484-107A7;0.0212735!10808-111A7;0.52262!10169-103B7;0.23058!10153-102I9;0.342962!13425-144D5;0.15702!13433-144E4;0.0104064!13437-144E8;0.0184725!11904-125F5;0.0246621!11905-125F6;0.438478!10039-101F3;0.429764!10791-110H8;0.160627!10017-101C8;0.185851!10045-101F9;0.596023!10509-107D5;0.415303!10839-111E2;0.858059!10692-109F8;0.90811!10079-102A7;0.251445!10078-102A6;0.087993!10721-110A1;0.457439!10569-108B2;0.0111126!10570-108B3;0.961815!10571-108B4;0.962824!10647-109A8;0.718015!10752-110D5;0.623834!10782-110G8;0.803218!10726-110A6;0.563246!10018-101C9;0.0597312!10086-102B5;0.939336!10182-103D2;0.0388446!10165-103B3;0.384044!10499-107C4;0.24232!10408-106B3;0.46611!10019-101D1;0.619025!10068-101I5;0.713299!10075-102A3;0.479516!10077-102A5;0.150642!10727-110A7;0.269841!10775-110G1;0.439731!10412-106B7;0.144509!12231-129F8;0.207583!12232-129F9;0.944548!12233-129G1;0.971749!12234-129G2;0.987763!10414-106B9;0.581741!10170-103B8;0.406455!10183-103D3;0.441494!10150-102I6;0.236253!10174-103C3;0.133784!10155-103A2;0.881254!10038-101F2;0.301793!10838-111E1;0.376392!10759-110E3;0.0763721!10514-107E1;0.238592!10465-106H6;5.5578e-05!10691-109F7;0.371722!10843-111E6;0.337606!10844-111E7;0.94186!11747-123G1;0.252672!11748-123G2;0.174041!11749-123G3;0.435768!11750-123G4;0.404781!11751-123G5;0.91815!11840-124H4;0.750879!11752-123G6;0.290528!11753-123G7;0.42046!11754-123G8;0.868491!11755-123G9;0.262824!11756-123H1;0.0119072!11833-124G6;0.644691!11760-123H5;0.208544!11836-124G9;0.672359!11758-123H3;0.806033!11835-124G8;0.464154!11762-123H7;0.763829!11838-124H2;0.201194!11757-123H2;0.159398!11759-123H4;0.155538!11761-123H6;0.451182!11842-124H6;0.606848!11837-124H1;0.693891!10568-108B1;0.466191!13230-141I8;0.000147331!13231-141I9;0.291444!10696-109G3;0.352084!10493-107B7;0.482165!10494-107B8;0.0727023!10850-111F4;0.201912!10851-111F5;0.224387!10852-111F6;0.196369!10853-111F7;0.489879!10854-111F8;0.00711069!10855-111F9;0.841978!10856-111G1;0.174289!10847-111F1;0.269872!10846-111E9;0.940027!10848-111F2;0.529059!10845-111E8;0.0783128!10857-111G2;0.74006!10858-111G3;0.0560915!10156-103A3;0.0190129!11901-125F2;0.129414!11902-125F3;0.662203!11903-125F4;0.347276!10689-109F5;0.677152!10648-109A9;0.0370817!10784-110H1;0.000962773!10744-110C6;0.444059!10772-110F7;0.897243!10474-106I6;0.747705!10600-108E6;0.936124!10684-109E9;0.153586!12226-129F3;0.303893!12227-129F4;0.779641!10508-107D4;0.000253272!10539-107G8;0.720329!10607-108F4;0.49516!10555-107I6;0.194874!10774-110F9;0.335371!10637-108I7;0.0245034!10663-109C6;0.690022!10728-110A8;0.594571!10729-110A9;0.728096!10430-106D7;0.954712!10730-110B1;0.580119!10813-111B3;0.0881237!10812-111B2;0.661207!10037-101F1;0.495462!10172-103C1;0.206414!10163-103B1;0.248527!10076-102A4;0.0991291!10073-102A1;0.183535!10036-101E9;0.183343!10195-103E6;0.190741!10277-104E7;0.194373!10434-106E2;0.93049!10550-107I1;0.913099!10545-107H5;0.0174092!10544-107H4;0.488315!10704-109H2;0.280354!10510-107D6;0.409026!10558-107I9;0.288874!10020-101D2;0.867959!10732-110B3;0.0919673!10049-101G4;0.807024!10698-109G5;0.761664!10437-106E5;0.250051!10417-106C3;0.000784283!10035-101E8;0.20896!10171-103B9;0.190084!10157-103A4;0.390378!10034-101E7;0.123136!10072-101I9;0.205562!10199-103F1;0.318047!10200-103F2;0.244454!10697-109G4;0.0579942!10723-110A3;0.878595!10179-103C8;0.760415!10160-103A7;0.464526!10180-103C9;0.143647!10162-103A9;0.746622!10021-101D3;0.13934!10840-111E3;0.809634!10706-109H4;0.561996!10033-101E6;0.949699!10032-101E5;0.312995!10490-107B4;0.208486!10439-106E7;0.000394824!10022-101D4;0.00689654!10176-103C5;0.014195!10469-106I1;0.348532!10067-101I4;0.0746938!10411-106B6;0.839334!10471-106I3;0.825971!10030-101E3;0.161921!10475-106I7;0.145695!10787-110H4;0.0706719!10477-106I9;0.373034!10695-109G2;0.939831!11771-123I7;0.431325!11772-123I8;0.340606!11773-123I9;0.766361!10093-102C3;0.22189!10442-106F1;0.0414274!10442-106F1;0.071216!10201-103F3;0.164425!10639-108I9;0.00281345!11843-124H7;0.325721!11841-124H5;0.465468!10693-109F9;0.173586!10436-106E4;0.0722626!10483-107A6;0.0092303!10282-104F3;0.242112!10023-101D5;0.966376!10066-101I3;0.341456!10065-101I2;0.477211!10800-110I8;0.521822!10610-108F7;0.0182103!10841-111E4;0.63109!10541-107H1;0.052433!10842-111E5;0.228756!10562-108A4;0.45589!10024-101D6;0.084814!10064-101I1;0.308939!10609-108F6;0.480705!10048-101G3;0.280943!10781-110G7;0.200605!10181-103D1;0.373877!10159-103A6;0.575395!10056-101H2;0.279106!10737-110B8;0.98266!10025-101D7;0.326463!10044-101F8;0.226897!10424-106D1;0.518346!10463-106H4;0.968832!10616-108G4;0.991622!10486-107A9;0.509282!10062-101H8;0.106546!10202-103F4;0.0409187!10158-103A5;0.0504712!10441-106E9;0.39721!10031-101E4;0.800531!10063-101H9;0.214364!10063-101H9;0.222895!11763-123H8;0.241842!11765-123I1;0.721108!11768-123I4;0.323134!10807-111A6;0.079509!10790-110H7;0.325854!10798-110I6;0.128843!10786-110H3;0.516156!10591-108D6;0.0065985!10593-108D8;0.0377642!10590-108D5;0.983153!10026-101D8;0.0160629!10096-102C6;0.00344713!10168-103B6;0.00687347!10154-103A1;0.773082!10209-103G2;0.290367!10061-101H7;0.119408!10027-101D9;0.75746!10043-101F7;0.601446!10783-110G9;0.879732!10028-101E1;0.000438131!10060-101H6;0.277613!10203-103F5;0.530726!10059-101H5;0.0459534!10047-101G2;0.690872!10029-101E2;0.0700938!10058-101H4;0.141535!10418-106C4;0.821976!10492-107B6;0.313625!10694-109G1;0.00341122!10797-110I5;0.0381221!10057-101H3;0.985161!10100-102D1;0.864178!10055-101H1;0.0243875!10204-103F6;0.287331!10191-103E2;0.0614726!10563-108A5;0.112437
|name=3-CCCCCCTTTTTT,BestGuess:SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer(0.693294444999093),T:1732.0(31.85%),B:9477.2(22.18%),P:1e-52
|name=3-CCCCCCTTTTTT,BestGuess:SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer(0.693294444999093),T:1732.0(31.85%),B:9477.2(22.18%),P:1e-52
|tomtom_result=Klf4#MA0039.1;0;0.000713758;0.339749;0.279391;10;CCCCCCTTTTTT;CCTTCCTTTA;-!TBP#MA0108.2;1;0.000847066;0.403204;0.279391;12;CCCCCCTTTTTT;CCCCGCCTTTTATAC;-!TBP#MA0108.2;1;0.000882521;0.42008;0.279391;12;CCCCCCTTTTTT;CCCCGCCTTTTATAC;-!YER130C#MA0423.1;-1;0.00125629;0.597992;0.298289;9;CCCCCCTTTTTT;ACCCCTATT;+!YGR067C#MA0425.1;1;0.00324207;1.54323;0.49164;12;CCCCCCTTTTTT;ACCCCACTTTTTTG;+!FKH1#MA0296.1;0;0.0033467;1.59303;0.49164;12;CCCCCCTTTTTT;TCCTCTTTGTTTACAATTCA;-!MSN2#MA0341.1;0;0.00362357;1.72482;0.49164;5;CCCCCCTTTTTT;CCCCT;-!MSN4#MA0342.1;-2;0.00534225;2.54291;0.563755;5;CCCCCCTTTTTT;CCCCT;-!RGM1#MA0366.1;-2;0.00534225;2.54291;0.563755;5;CCCCCCTTTTTT;CCCCT;-!GIS1#MA0306.1;-1;0.00724029;3.44638;0.687645;9;CCCCCCTTTTTT;ACCCCTAAA;+!HMG-I/Y#MA0045.1;3;0.0129697;6.17357;0.997635;12;CCCCCCTTTTTT;GTTTTTCCATTTGTTG;-!YML081W#MA0431.1;1;0.0193662;9.2183;0.997635;8;CCCCCCTTTTTT;ACCCCGCAC;+
}}
}}

Latest revision as of 14:09, 7 September 2012

Full Name: 3-CCCCCCTTTTTT,BestGuess:SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer(0.693294444999093),T:1732.0(31.85%),B:9477.2(22.18%),P:1e-52

Motif matrix
POACGT
172.7441264.36185.324209.572
298.7241321.516143.756168.004
3133.3641288.608126.436183.592
481.4041087.696251.14311.76
5117.7761186.4279.672348.132
686.61087.69676.208481.496
7107.384230.35677.941316.32
838.104303.1105.6521285.144
931.176285.78126.4361288.608
10109.116187.056116.0441319.784
1146.764292.708143.7561248.772
1290.064202.64462.3521376.94

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Klf4#MA0039.100.0007137580.3397490.27939110CCCCCCTTTTTTCCTTCCTTTA-
TBP#MA0108.210.0008470660.4032040.27939112CCCCCCTTTTTTCCCCGCCTTTTATAC-
TBP#MA0108.210.0008825210.420080.27939112CCCCCCTTTTTTCCCCGCCTTTTATAC-
YER130C#MA0423.1-10.001256290.5979920.2982899CCCCCCTTTTTTACCCCTATT+
YGR067C#MA0425.110.003242071.543230.4916412CCCCCCTTTTTTACCCCACTTTTTTG+
FKH1#MA0296.100.00334671.593030.4916412CCCCCCTTTTTTTCCTCTTTGTTTACAATTCA-
MSN2#MA0341.100.003623571.724820.491645CCCCCCTTTTTTCCCCT-
MSN4#MA0342.1-20.005342252.542910.5637555CCCCCCTTTTTTCCCCT-
RGM1#MA0366.1-20.005342252.542910.5637555CCCCCCTTTTTTCCCCT-
GIS1#MA0306.1-10.007240293.446380.6876459CCCCCCTTTTTTACCCCTAAA+
HMG-I/Y#MA0045.130.01296976.173570.99763512CCCCCCTTTTTTGTTTTTCCATTTGTTG-
YML081W#MA0431.110.01936629.21830.9976358CCCCCCTTTTTTACCCCGCAC+
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