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MacroAPE 1083:SRF do: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;569.0517601466087;188.14145917585756;623.7866189871102;795.0201616904222!2;21.34523334711168;2039.2802677428863;72.51534939684747;42.8591495...")
 
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-119H8;0.0356576!11600-120H7;0.0309268!11681-122H7;0.176774!11216-116B1;0.185135!12179-129A1;0.581119!12180-129A2;0.35382!12181-129A3;0.196533!12176-128I7;0.540385!12177-128I8;0.156161!12182-129A4;0.251915!12183-129A5;0.579403!12184-129A6;0.40482!10809-111A8;0.388818!10597-108E3;0.668302!10717-109I6;0.0427098!10455-106G5;0.0259213!10534-107G3;2.58898e-06!10429-106D6;2.75878e-05!10464-106H5;0.0122615!10827-111C8;0.00703145!10789-110H6;0.00169667!10828-111C9;0.0432835!10788-110H5;0.0373152!10792-110H9;0.000242265!10765-110E9;5.64172e-05!10829-111D1;0.0018018!10830-111D2;0.000170337!10831-111D3;0.0020471!10832-111D4;0.00205009!10833-111D5;0.00793913!10764-110E8;0.0154893!10770-110F5;0.0556039!10399-106A3;0.0151694!10400-106A4;0.242856!10405-106A9;0.228!10834-111D6;0.175256!10835-111D7;0.0987379!10836-111D8;0.0131058!10837-111D9;3.98038e-05!10699-109G6;0.00792821!10802-111A1;0.000129042!10796-110I4;0.0007021!10010-101C1;0.0573498!10810-111A9;1.85126e-07!10421-106C7;0.187477!10708-109H6;0.015224!12235-129G3;0.790774!12236-129G4;0.554369!12237-129G5;0.442485!10167-103B5;0.167604!10151-102I7;0.0363769!10428-106D5;0.0242486!10795-110I3;0.341428!10805-111A4;1.75833e-07!10052-101G7;0.0336486!10189-103D9;4.27446e-08!10589-108D4;2.15149e-05!10425-106D2;1.93138e-09!10427-106D4;0.545187!10702-109G9;0.0157701!10432-106D9;5.13538e-05!10496-107C1;0.196874!10718-109I7;0.000703045!10011-101C2;0.0263589!10053-101G8;5.8755e-12!10686-109F2;0.868377!10084-102B3;0.00388283!10012-101C3;0.203911!10085-102B4;0.067861!10482-107A5;0.0156373!10419-106C5;0.119908!10080-102A8;0.00938254!10760-110E4;0.00717141!10709-109H7;0.00765181!10710-109H8;0.0679864!10703-109H1;8.58247e-06!10719-109I8;5.68208e-08!10642-109A3;0.000141473!10177-103C6;0.0710232!10164-103B2;0.0187268!10173-103C2;0.00945176!10166-103B4;0.000520414!10083-102B2;0.00389157!10188-103D8;0.0304272!10552-107I3;0.594558!10553-107I4;0.0492988!10013-101C4;0.95868!10536-107G5;2.18312e-05!10618-108G6;0.000836686!10423-106C9;0.0660122!10785-110H2;0.501031!12238-129G6;0.194173!12239-129G7;0.0205685!12240-129G8;0.000229225!10416-106C2;0.00782619!10801-110I9;0.00190236!10766-110F1;0.031915!10824-111C5;0.0201206!10825-111C6;0.000915191!10826-111C7;0.00437267!10454-106G4;0.0207061!10409-106B4;0.00014994!10638-108I8;0.0170693!10636-108I6;0.00193107!10513-107D9;0.893707!10420-106C6;0.443811!10082-102B1;4.61862e-06!10014-101C5;1.82521e-07!10070-101I7;0.000207935!10452-106G2;0.000156636!10453-106G3;0.108446!10449-106F8;0.0213054!10042-101F6;0.0193464!10069-101I6;0.245064!10193-103E4;1.23786e-10!10631-108I1;0.0443074!10438-106E6;0.00017707!10488-107B2;0.112718!10196-103E7;0.442209!10071-101I8;0.000457532!10071-101I8;0.0243378!10041-101F5;0.00859243!10451-106G1;0.086805!10450-106F9;0.00524263!10604-108F1;0.00622205!10605-108F2;0.0765338!10606-108F3;0.455495!10603-108E9;0.292072!10497-107C2;0.143472!10448-106F7;0.0176687!10643-109A4;0.875153!10426-106D3;0.191085!10431-106D8;0.546733!10197-103E8;0.774057!10443-106F2;7.1442e-09!10815-111B5;0.908074!10816-111B6;0.0319034!10817-111B7;0.026178!10015-101C6;0.0305784!10410-106B5;2.19226e-11!10054-101G9;0.0422655!10758-110E2;0.0766387!10711-109H9;0.742434!10040-101F4;0.00420311!10470-106I2;0.070156!10415-106C1;0.0513529!10198-103E9;0.765436!10614-108G2;0.000282799!10612-108F9;0.210304!10549-107H9;0.00353228!10615-108G3;0.0172864!10487-107B1;6.19926e-11!10433-106E1;3.89762e-09!10688-109F4;0.717811!10444-106F3;0.317547!10444-106F3;0.957296!10485-107A8;0.994546!10413-106B8;0.628041!10175-103C4;0.747264!10161-103A8;0.0213325!12131-128D7;0.0278288!10624-108H3;0.0501627!10712-109I1;0.0211039!10205-103F7;0.129303!10206-103F8;3.58535e-08!10207-103F9;5.36877e-10!10050-101G5;3.77071e-10!10051-101G6;1.03413e-13!10016-101C7;7.0008e-10!10046-101G1;5.08045e-13!10778-110G4;8.39935e-13!10633-108I3;2.58074e-07!10818-111B8;0.107951!10819-111B9;0.0232732!10820-111C1;0.0247976!10484-107A7;0.023189!10808-111A7;0.000132095!10169-103B7;0.0184341!10153-102I9;0.0392243!13425-144D5;0.0294411!13433-144E4;0.0832841!13437-144E8;0.0572652!11904-125F5;0.0240433!11905-125F6;0.753307!10039-101F3;0.60266!10791-110H8;0.107729!10017-101C8;0.0051245!10045-101F9;0.581818!10509-107D5;0.433844!10839-111E2;0.555506!10692-109F8;0.00117306!10079-102A7;0.749326!10078-102A6;2.47628e-06!10721-110A1;4.32522e-09!10569-108B2;0.874741!10570-108B3;0.104333!10571-108B4;0.00718454!10647-109A8;0.395229!10752-110D5;0.140091!10782-110G8;0.195346!10726-110A6;0.187584!10018-101C9;0.932226!10086-102B5;0.791834!10182-103D2;0.554326!10165-103B3;0.0200517!10499-107C4;0.0310724!10408-106B3;0.0102875!10019-101D1;0.00109206!10068-101I5;0.0161906!10075-102A3;0.00377087!10077-102A5;0.116073!10727-110A7;0.213748!10775-110G1;0.139802!10412-106B7;2.56803e-05!12231-129F8;0.0377328!12232-129F9;0.00574786!12233-129G1;0.000182334!12234-129G2;0.0485425!10414-106B9;0.0322793!10170-103B8;3.70113e-07!10183-103D3;0.0119348!10150-102I6;0.0118413!10174-103C3;0.00934771!10155-103A2;0.0886809!10038-101F2;0.0789859!10838-111E1;0.48514!10759-110E3;0.00146425!10514-107E1;0.00180652!10465-106H6;0.0449073!10691-109F7;0.0505903!10843-111E6;0.242074!10844-111E7;2.08824e-09!11747-123G1;1.51152e-10!11748-123G2;0.189699!11749-123G3;0.00156341!11750-123G4;0.295781!11751-123G5;0.000145154!11840-124H4;5.30704e-07!11752-123G6;7.85005e-06!11753-123G7;0.0615903!11754-123G8;0.00744465!11755-123G9;0.00778107!11756-123H1;0.116793!11833-124G6;0.0115861!11760-123H5;0.445425!11836-124G9;0.000253416!11758-123H3;0.544736!11835-124G8;0.0080434!11762-123H7;6.45836e-07!11838-124H2;0.000350603!11757-123H2;0.000271488!11759-123H4;0.0339289!11761-123H6;3.38164e-06!11842-124H6;0.0440681!11837-124H1;0.00185886!10568-108B1;2.21161e-08!13230-141I8;0.000920343!13231-141I9;0.00196524!10696-109G3;0.000153281!10493-107B7;3.80637e-05!10494-107B8;0.645476!10850-111F4;0.976256!10851-111F5;0.0130451!10852-111F6;0.00639074!10853-111F7;0.241461!10854-111F8;0.955596!10855-111F9;0.655178!10856-111G1;0.426844!10847-111F1;0.285633!10846-111E9;0.896026!10848-111F2;0.905311!10845-111E8;0.556421!10857-111G2;0.000150099!10858-111G3;0.0994377!10156-103A3;0.555862!11901-125F2;0.0156963!11902-125F3;0.468567!11903-125F4;0.636814!10689-109F5;0.761948!10648-109A9;3.63601e-05!10784-110H1;0.968679!10744-110C6;0.12287!10772-110F7;0.963664!10474-106I6;0.000696375!10600-108E6;0.000660551!10684-109E9;0.103602!12226-129F3;0.134192!12227-129F4;0.335132!10508-107D4;0.815206!10539-107G8;7.91528e-07!10607-108F4;3.87696e-06!10555-107I6;2.81572e-06!10774-110F9;0.000112736!10637-108I7;0.000221595!10663-109C6;1.85897e-06!10728-110A8;0.0253765!10729-110A9;0.000291431!10430-106D7;6.00971e-08!10730-110B1;0.000271334!10813-111B3;8.08524e-08!10812-111B2;0.000593452!10037-101F1;0.00681422!10172-103C1;0.0981474!10163-103B1;0.0140658!10076-102A4;0.0072992!10073-102A1;0.0815544!10036-101E9;0.000498779!10195-103E6;0.107589!10277-104E7;0.168215!10434-106E2;0.50886!10550-107I1;0.264978!10545-107H5;0.00279154!10544-107H4;0.0759917!10704-109H2;0.751256!10510-107D6;0.00583263!10558-107I9;0.103989!10020-101D2;0.830843!10732-110B3;1.62899e-06!10049-101G4;0.00951352!10698-109G5;0.0195343!10437-106E5;0.0209311!10417-106C3;0.5979!10035-101E8;0.830001!10171-103B9;0.0890798!10157-103A4;0.0131218!10034-101E7;0.00916363!10072-101I9;0.119292!10199-103F1;0.00065461!10200-103F2;0.0964101!10697-109G4;5.68875e-14!10723-110A3;0.0127201!10179-103C8;0.101945!10160-103A7;0.0701452!10180-103C9;0.044226!10162-103A9;2.21552e-06!10021-101D3;5.98628e-07!10840-111E3;1.74306e-05!10706-109H4;0.00381609!10033-101E6;0.381817!10032-101E5;0.108448!10490-107B4;0.15657!10439-106E7;0.153544!10022-101D4;0.0107862!10176-103C5;8.98939e-08!10469-106I1;0.00560389!10067-101I4;0.0670746!10411-106B6;0.00243372!10471-106I3;0.3232!10030-101E3;0.00367014!10475-106I7;0.265624!10787-110H4;2.06778e-05!10477-106I9;0.000784139!10695-109G2;0.0307972!11771-123I7;1.34665e-05!11772-123I8;0.0746537!11773-123I9;0.988371!10093-102C3;0.905811!10442-106F1;0.217672!10442-106F1;0.320741!10201-103F3;0.436274!10639-108I9;0.00384309!11843-124H7;0.831184!11841-124H5;0.493734!10693-109F9;0.144799!10436-106E4;0.519924!10483-107A6;0.00703914!10282-104F3;0.00156336!10023-101D5;1.80822e-13!10066-101I3;8.17705e-12!10065-101I2;4.57628e-13!10800-110I8;1.72008e-08!10610-108F7;5.35173e-07!10841-111E4;0.0405834!10541-107H1;0.182355!10842-111E5;1.19974e-06!10562-108A4;5.14481e-07!10024-101D6;7.80737e-05!10064-101I1;0.035481!10609-108F6;0.0409171!10048-101G3;3.77234e-06!10781-110G7;8.81302e-15!10181-103D1;1.66749e-08!10159-103A6;0.0887289!10056-101H2;0.0354721!10737-110B8;0.987925!10025-101D7;2.28987e-05!10044-101F8;0.19805!10424-106D1;0.0276786!10463-106H4;0.000148523!10616-108G4;0.0111325!10486-107A9;0.16254!10062-101H8;4.025e-05!10202-103F4;7.68116e-05!10158-103A5;0.00219975!10441-106E9;0.043494!10031-101E4;0.0811057!10063-101H9;0.177352!10063-101H9;0.00269993!11763-123H8;0.213851!11765-123I1;0.0365852!11768-123I4;0.0404502!10807-111A6;0.000706903!10790-110H7;0.185997!10798-110I6;3.63386e-05!10786-110H3;0.00891265!10591-108D6;0.692044!10593-108D8;0.0498304!10590-108D5;0.0035709!10026-101D8;0.00756293!10096-102C6;0.00183823!10168-103B6;0.903623!10154-103A1;0.0278451!10209-103G2;0.0204886!10061-101H7;6.49896e-10!10027-101D9;2.30195e-06!10043-101F7;0.137924!10783-110G9;0.297459!10028-101E1;0.411226!10060-101H6;0.00791224!10203-103F5;3.28233e-06!10059-101H5;4.51404e-12!10047-101G2;4.87338e-14!10029-101E2;0.000108217!10058-101H4;4.78011e-05!10418-106C4;1.13472e-05!10492-107B6;0.0115868!10694-109G1;0.386035!10797-110I5;0.253701!10057-101H3;0.0952946!10100-102D1;3.18347e-14!10055-101H1;1.27111e-09!10204-103F6;0.00521486!10191-103E2;0.00129021!10563-108A5;3.59687e-09
|name=SRF_do
|name=SRF_do
|tomtom_result=SRF#MA0083.1;-1;2.63783e-12;1.25561e-09;2.49202e-09;12;TCCATATATGGGCAT;CCATATATGGGC;-!AG#MA0005.1;0;1.25236e-05;0.00596121;0.00260267;11;TCCATATATGGGCAT;ACCAAATTTGG;-!squamosa#MA0082.1;-1;1.27607e-05;0.00607411;0.00260267;14;TCCATATATGGGCAT;CCAAAAATGGAAAT;+!AGL3#MA0001.1;-1;1.37747e-05;0.00655678;0.00260267;10;TCCATATATGGGCAT;CTATTTATGG;-!MCM1#MA0331.1;1;0.00183275;0.872389;0.192383;11;TCCATATATGGGCAT;TTCCTAATTGGG;-!TBP#MA0108.2;-1;0.00249126;1.18584;0.213959;14;TCCATATATGGGCAT;GTATAAAAGGCGGGG;+!TBP#MA0108.2;-1;0.00249126;1.18584;0.213959;14;TCCATATATGGGCAT;GTATAAAAGGCGGGG;+!Hltf#MA0109.1;-3;0.00555203;2.64277;0.403472;10;TCCATATATGGGCAT;ATATAAGGTT;-!NHP6B#MA0346.1;4;0.00621895;2.96022;0.419656;15;TCCATATATGGGCAT;TCATATTATATATAAATAAA;-!ASH1#MA0276.1;-1;0.00758793;3.61186;0.4779;10;TCCATATATGGGCAT;CCCGATCCGG;-!NHP6A#MA0345.1;4;0.00832536;3.96287;0.488001;15;TCCATATATGGGCAT;ATGACCTATATATAAAAATGA;+!YER130C#MA0423.1;-4;0.0101818;4.84652;0.506261;9;TCCATATATGGGCAT;AATAGGGGT;-!SIG1#MA0379.1;-4;0.01237;5.88812;0.556488;5;TCCATATATGGGCAT;TATAT;-!Gata1#MA0035.2;0;0.0163276;7.77194;0.67235;11;TCCATATATGGGCAT;TTCTTATCTGT;-!twi#MA0249.1;-1;0.0163689;7.79158;0.67235;12;TCCATATATGGGCAT;CAACATATGCGA;-
}}
}}

Latest revision as of 13:16, 7 September 2012

Full Name: SRF_do

Motif matrix
POACGT
1569.0517601466087188.14145917585756623.7866189871102795.0201616904222
221.345233347111682039.280267742886372.5153493968474742.859149513156964
321.232073622547082082.14275250285444.66830692367334267.95686695092692
41151.375321237404559.8314033851878516.05629484668137948.7369805307262
5359.968052106164925.0708870110691464.512152206339661726.4489086764295
61710.111254612186520.31018622486939122.1193310802891323.4592280826575
7224.1251539400337362.2049718150050355.3158254053250861834.3540488396375
81493.75038924886776.646567219473158.107279479370575547.4957640522936
9718.18667768928556.742667620263134128.184932809888551272.8857218805626
10116.440763098952294.9000771012933652040.619580277528514.03957952222673
1156.9307737509736859.8263480395506822073.527480384846535.71539782463086
12384.2234353655347390.232916699768851077.180694792354324.36295314234144
13617.31616982921671236.6831617709977176.30258777065475145.69808062912855
141544.204496751980763.96108848186516266.5608904415209301.2735243246348
15319.9319203818095266.9500855877998450.27440181428691138.8435922161052

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SRF#MA0083.1-12.63783e-121.25561e-092.49202e-0912TCCATATATGGGCATCCATATATGGGC-
AG#MA0005.101.25236e-050.005961210.0026026711TCCATATATGGGCATACCAAATTTGG-
squamosa#MA0082.1-11.27607e-050.006074110.0026026714TCCATATATGGGCATCCAAAAATGGAAAT+
AGL3#MA0001.1-11.37747e-050.006556780.0026026710TCCATATATGGGCATCTATTTATGG-
MCM1#MA0331.110.001832750.8723890.19238311TCCATATATGGGCATTTCCTAATTGGG-
TBP#MA0108.2-10.002491261.185840.21395914TCCATATATGGGCATGTATAAAAGGCGGGG+
TBP#MA0108.2-10.002491261.185840.21395914TCCATATATGGGCATGTATAAAAGGCGGGG+
Hltf#MA0109.1-30.005552032.642770.40347210TCCATATATGGGCATATATAAGGTT-
NHP6B#MA0346.140.006218952.960220.41965615TCCATATATGGGCATTCATATTATATATAAATAAA-
ASH1#MA0276.1-10.007587933.611860.477910TCCATATATGGGCATCCCGATCCGG-
NHP6A#MA0345.140.008325363.962870.48800115TCCATATATGGGCATATGACCTATATATAAAAATGA+
YER130C#MA0423.1-40.01018184.846520.5062619TCCATATATGGGCATAATAGGGGT-
SIG1#MA0379.1-40.012375.888120.5564885TCCATATATGGGCATTATAT-
Gata1#MA0035.200.01632767.771940.6723511TCCATATATGGGCATTTCTTATCTGT-
twi#MA0249.1-10.01636897.791580.6723512TCCATATATGGGCATCAACATATGCGA-
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