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MCL coexpression mm9:149: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.456960520238567,0,0,0.445323827296554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36580144956338,0,0,0,0,0,0,0,0.793777793947479,0.260904522905504,0.0973736644748266,0.0788034163803455,0.0773548534010084,0.935923675662111,0.954102926255075,0.761882044094083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680267587364258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949707724219826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!2.79e-30!31;UBERON:0005409!2.65e-23!47;UBERON:0001155!1.68e-14!2;UBERON:0000059!1.68e-14!2;UBERON:0004921!6.50e-09!114;UBERON:0001007!9.76e-09!116;UBERON:0001555!9.76e-09!116;UBERON:0007026!9.76e-09!116;UBERON:0004119!1.45e-08!118;UBERON:0000925!1.45e-08!118;UBERON:0006595!1.45e-08!118;UBERON:0001153!4.10e-08!1;UBERON:0001045!4.10e-08!1
}}

Latest revision as of 14:47, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:58203741..58203752,+p@chr11:58203741..58203752
+
Mm9::chr11:58203770..58203793,+p@chr11:58203770..58203793
+
Mm9::chr11:95725954..95725962,-p@chr11:95725954..95725962
-
Mm9::chr11:95773920..95773923,-p@chr11:95773920..95773923
-
Mm9::chr12:59514252..59514265,+p@chr12:59514252..59514265
+
Mm9::chr13:62100902..62100905,-p@chr13:62100902..62100905
-
Mm9::chr1:36546996..36546999,+p@chr1:36546996..36546999
+
Mm9::chr1:36563703..36563707,+p@chr1:36563703..36563707
+
Mm9::chr5:137614130..137614140,-p@chr5:137614130..137614140
-
Mm9::chr5:137614178..137614190,-p@chr5:137614178..137614190
-
Mm9::chr5:137622629..137622637,-p@chr5:137622629..137622637
-
Mm9::chr5:137625734..137625744,-p@chr5:137625734..137625744
-
Mm9::chr5:137625750..137625779,-p@chr5:137625750..137625779
-
Mm9::chr5:137625874..137625897,+p@chr5:137625874..137625897
+
Mm9::chr5:137625905..137625937,-p1@Muc3
Mm9::chr5:137625946..137625953,-p16@Muc3
Mm9::chr5:137625987..137625995,-p19@Muc3
Mm9::chr5:137626001..137626014,-p4@Muc3
Mm9::chr5:137626039..137626046,-p15@Muc3
Mm9::chr5:137626070..137626080,-p9@Muc3
Mm9::chr5:137626219..137626229,-p10@Muc3
Mm9::chr5:137626234..137626239,+p@chr5:137626234..137626239
+
Mm9::chr5:137626237..137626242,-p23@Muc3
Mm9::chr5:137626248..137626263,+p@chr5:137626248..137626263
+
Mm9::chr5:137626274..137626282,-p14@Muc3
Mm9::chr5:137626339..137626353,-p6@Muc3
Mm9::chr5:137626364..137626371,-p21@Muc3
Mm9::chr5:137626380..137626389,-p12@Muc3
Mm9::chr5:137626418..137626428,-p8@Muc3
Mm9::chr5:137626450..137626461,-p7@Muc3
Mm9::chr5:137626501..137626514,-p@chr5:137626501..137626514
-
Mm9::chr5:137626522..137626537,-p@chr5:137626522..137626537
-
Mm9::chr5:137626612..137626622,-p@chr5:137626612..137626622
-
Mm9::chr5:137626628..137626654,+p@chr5:137626628..137626654
+
Mm9::chr5:137626648..137626663,-p@chr5:137626648..137626663
-
Mm9::chr5:137626702..137626712,-p@chr5:137626702..137626712
-
Mm9::chr5:137626876..137626892,+p@chr5:137626876..137626892
+
Mm9::chr5:137626878..137626913,-p@chr5:137626878..137626913
-
Mm9::chr5:137626918..137626932,-p@chr5:137626918..137626932
-
Mm9::chr5:137626977..137626983,-p@chr5:137626977..137626983
-
Mm9::chr5:137627142..137627147,-p@chr5:137627142..137627147
-
Mm9::chr5:137627147..137627158,+p@chr5:137627147..137627158
+
Mm9::chr5:137627163..137627188,+p@chr5:137627163..137627188
+
Mm9::chr5:137627191..137627199,-p@chr5:137627191..137627199
-
Mm9::chr5:137627201..137627218,-p@chr5:137627201..137627218
-
Mm9::chr5:137627222..137627233,-p@chr5:137627222..137627233
-
Mm9::chr5:137627330..137627344,-p@chr5:137627330..137627344
-
Mm9::chr5:137632707..137632726,+p@chr5:137632707..137632726
+
Mm9::chr5:137632787..137632799,-p@chr5:137632787..137632799
-
Mm9::chr5:137632854..137632871,-p@chr5:137632854..137632871
-
Mm9::chr5:137632895..137632904,-p@chr5:137632895..137632904
-
Mm9::chr5:137632977..137633017,+p@chr5:137632977..137633017
+
Mm9::chr5:137633017..137633057,-p@chr5:137633017..137633057
-
Mm9::chr5:137633104..137633156,+p@chr5:137633104..137633156
+
Mm9::chr5:137633130..137633139,-p@chr5:137633130..137633139
-
Mm9::chr5:137633144..137633211,-p@chr5:137633144..137633211
-
Mm9::chr5:137633160..137633168,+p@chr5:137633160..137633168
+
Mm9::chr5:137633234..137633241,-p@chr5:137633234..137633241
-
Mm9::chr5:137633450..137633520,-p@chr5:137633450..137633520
-
Mm9::chr5:137633526..137633536,-p@chr5:137633526..137633536
-
Mm9::chr5:137633544..137633555,-p@chr5:137633544..137633555
-
Mm9::chr5:137633561..137633572,-p@chr5:137633561..137633572
-
Mm9::chr5:137633574..137633590,+p@chr5:137633574..137633590
+
Mm9::chr5:137633587..137633627,-p@chr5:137633587..137633627
-
Mm9::chr5:137633592..137633602,+p@chr5:137633592..137633602
+
Mm9::chr5:137633630..137633640,-p@chr5:137633630..137633640
-
Mm9::chr5:137633677..137633706,-p@chr5:137633677..137633706
-
Mm9::chr5:137633794..137633805,-p@chr5:137633794..137633805
-
Mm9::chr5:137633814..137633823,-p@chr5:137633814..137633823
-
Mm9::chr5:137633849..137633862,-p@chr5:137633849..137633862
-
Mm9::chr5:137633892..137633902,-p@chr5:137633892..137633902
-
Mm9::chr5:137633918..137633927,-p@chr5:137633918..137633927
-
Mm9::chr5:137634786..137634796,-p@chr5:137634786..137634796
-
Mm9::chr5:137634812..137634829,-p@chr5:137634812..137634829
-
Mm9::chr6:29826707..29826710,+p@chr6:29826707..29826710
+
Mm9::chr6:29837918..29837921,+p@chr6:29837918..29837921
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine2.79e-3031
gastrointestinal system2.65e-2347
colon1.68e-142
large intestine1.68e-142
subdivision of digestive tract6.50e-09114
digestive system9.76e-09116
digestive tract9.76e-09116
primitive gut9.76e-09116
endoderm-derived structure1.45e-08118
endoderm1.45e-08118
presumptive endoderm1.45e-08118
caecum4.10e-081
midgut4.10e-081


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10
MA0004.10.00562708
MA0006.10.000301635
MA0007.10.00464008
MA0009.10.126401
MA0014.14.37606e-10
MA0017.10.0993294
MA0019.10.75244
MA0024.10.105433
MA0025.11.35096
MA0027.11.54541
MA0028.10.000383895
MA0029.10.0957305
MA0030.10.0986115
MA0031.10.0835307
MA0038.10.0241079
MA0040.10.132736
MA0041.10.0421568
MA0042.10.0887226
MA0043.130.3736
MA0046.10.144981
MA0048.10.144507
MA0050.10.00888468
MA0051.10.109425
MA0052.10.136894
MA0055.132.1609
MA0056.10
MA0057.10.00227176
MA0058.10.0013532
MA0059.10.00167262
MA0060.10.00172923
MA0061.10.0123286
MA0063.10
MA0066.10.0220398
MA0067.10.346597
MA0068.17.08105e-05
MA0069.10.137071
MA0070.10.818554
MA0071.10.045032
MA0072.10.401533
MA0073.10
MA0074.10.0741923
MA0076.10.00591957
MA0077.10.117104
MA0078.10.0331431
MA0081.10.0152541
MA0083.10.178598
MA0084.10.616887
MA0087.10.468122
MA0088.12.82844e-09
MA0089.10
MA0090.10.0211396
MA0091.10.10305
MA0092.10.0035845
MA0093.10.000461652
MA0095.10
MA0098.10
MA0100.13.62905
MA0101.10.00193952
MA0103.12.96642
MA0105.10.000130991
MA0106.10.0350184
MA0107.10.00459012
MA0108.20.215424
MA0109.10
MA0111.10.736282
MA0113.10.0285166
MA0114.10.00352359
MA0115.10.180708
MA0116.10.000300165
MA0117.10.162143
MA0119.10.00195814
MA0122.10.173458
MA0124.10.307255
MA0125.10.255313
MA0130.10
MA0131.10.0506646
MA0132.10
MA0133.10
MA0135.10.200965
MA0136.10.019244
MA0139.19.63654e-06
MA0140.10.0144383
MA0141.10.00100445
MA0142.10.0777606
MA0143.10.308628
MA0144.10.000779794
MA0145.11.11904e-06
MA0146.14.68133e-13
MA0147.10.000115576
MA0148.10.00685984
MA0149.10.00211973
MA0062.20.000741257
MA0035.20.0150957
MA0039.20
MA0138.20.0482641
MA0002.20.00865665
MA0137.20.000950987
MA0104.21.86249e-05
MA0047.20.0239597
MA0112.23.44293e-05
MA0065.20.000136391
MA0150.10.0263411
MA0151.10
MA0152.10.0239804
MA0153.10.211316
MA0154.19.47395e-05
MA0155.12.0153e-08
MA0156.10.000793771
MA0157.10.504432
MA0158.10
MA0159.10.00136519
MA0160.12.93058
MA0161.10
MA0162.11.14851e-13
MA0163.11.76173e-11
MA0164.10.0193046
MA0080.20.000613911
MA0018.212.5266
MA0099.20.046407
MA0079.20
MA0102.20.663408
MA0258.10.0087248
MA0259.18.51567e-05
MA0442.10
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