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MCL coexpression mm9:194: Difference between revisions

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{{MCL_coexpression_mm9
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3252,0.123243179162936,1.04550586241409,0.0350191434221184,0.0139144521996779,0.00618349855250198,0.0179539300048549,0.0150737066887745,0.0173110920369035,0.0213215218318129,0.0305734534518033,0.0463123963346588,0.0407299045831462,0.0218987846673311,0.0250250021742587,0.00566362825471768,0.0123378259774784,0.00274146309140674,0.0085811796515835,0.0146282340471611,0.00948185588537742,0.0196004985010902,0.00806267413638712,0.00991804617330519,0.0134797168047877,0.0132448499393594,0.0236228384422971,0.0292811573471731,0.0171590913148727,0.0151455631808885,0.0397582891608715,0.0201386554099892,0.0339441710785184,-0.000253652939094656,0.0143949473676871,0.00505652423866343,4.03147668271597e-06,0.00021807810281373,0.000584926381582558,0.00331226775883848,0.00681238029245366,0.00702088339579199,0.00282745854308666,0.00572988882748951,0.012317245741564,0.00638475872295131,0.00948095364070354,0.0129272014418342,0.0202995264918435,0.0285411080768415,0.027051032468184,0.00969927929037852,0.031179823710211,0.0047720458457533,0.00896836417270533,0.00799741867621171,0.0150221331623698,0.0185338345013173,0.0228570313282652,0.0243351949842274,0.0223581618929633,0.00949085915273858,0.0045240788114344,0.0058000652920119,0.0075682970201105,0.00764520236024012,0.00586451635366545,0.0105502712534052,0.0125663428518459,0.0169234026615881,0.0146813554292393,0.0145212281229917,0.00786454191068935,0.0086723798731438,0.0145170550710907,0.0199708994062437,0.0155482331915479,0.0216622012651383,0.0227725710543151,0.00318059135884763,0.00214719115173284,-0.00047938443410739,0.0379995036380276,0.155250918590704,0.381095400130147,0.0614532497856393,0.0390988278585592,0.0140260321185044,0.0120761854382826,0.0112880780355272,0.0150571638079946,0.00153841031552982,-0.00299401315364426,0.00148639975036088,0.00258399514353078,0.00910206972992742,0.00680356082841342,0.0106750408844326,0.023570236858638,0.012961045964016,0.00955973894134699,0.00474098325907452,0.00793858564509168,0.0177069465811908,0.0117330710732299,0.00425856220596292,0.0158535322569916,0.0255469583029216,0.0171895866100442,0.012659567018016,0.0172448533330743,0.0183639976071713,0.0221642271002281,0.023754679778433,0.0139009939414052,0.0179865431935187,0.0174793943644616,0.0188809681126885,0.00673966180320233,0.0115376823690146,0.0128629398472431,0.0142293377953307,0.0169067614023997,0.0178953276385224,0.00512017251277981,0.0138491529767064,0.0227045260426862,0.0162147437379913,0.0139009699546336,0.0210757552857791,0.0102955753436449,0.0147010423314169,0.0310841172637982,0.0187050954775415,0.0186212603958694,0.00991795980941315,0.00220020559619987,0.00425111611290673
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474767820946565,0,0,0.925500599055376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0747003483965965,0.260520306962516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000474!3.75e-39!9;UBERON:0003100!3.07e-32!11;UBERON:0003134!4.22e-25!8;UBERON:0000993!3.06e-23!1;UBERON:0006834!1.39e-22!1;UBERON:0005795!1.79e-22!4;UBERON:0000995!1.79e-22!4;UBERON:0003975!3.19e-18!5;UBERON:0005156!3.27e-14!26;UBERON:0000990!3.27e-14!26;UBERON:0004175!1.26e-10!9;UBERON:0003133!5.26e-09!24;UBERON:0000992!1.34e-08!3;UBERON:0007023!1.20e-07!51
}}

Latest revision as of 14:51, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:31033237..31033248,+p2@Hddc2
Mm9::chr10:39252793..39252820,+p4@Fyn
Mm9::chr10:91625472..91625485,-p@chr10:91625472..91625485
-
Mm9::chr10:91625498..91625510,-p@chr10:91625498..91625510
-
Mm9::chr11:113070947..113070968,-p2@4732490B19Rik
Mm9::chr11:18916696..18916707,-p@chr11:18916696..18916707
-
Mm9::chr11:83395575..83395592,+p1@ENSMUST00000141082
Mm9::chr15:28133481..28133497,+p1@Dnahc5
Mm9::chr15:98002475..98002482,+p@chr15:98002475..98002482
+
Mm9::chr16:84774135..84774149,+p8@Jam2
Mm9::chr17:46233583..46233596,-p@chr17:46233583..46233596
-
Mm9::chr17:46233607..46233616,-p@chr17:46233607..46233616
-
Mm9::chr18:39029234..39029244,+p@chr18:39029234..39029244
+
Mm9::chr18:39041081..39041109,-p@chr18:39041081..39041109
-
Mm9::chr18:39041166..39041173,-p@chr18:39041166..39041173
-
Mm9::chr18:78246186..78246196,-p@chr18:78246186..78246196
-
Mm9::chr18:78259566..78259574,+p@chr18:78259566..78259574
+
Mm9::chr19:17444552..17444593,+p@chr19:17444552..17444593
+
Mm9::chr19:28635465..28635477,-p@chr19:28635465..28635477
-
Mm9::chr19:38299195..38299209,-p@chr19:38299195..38299209
-
Mm9::chr1:185455318..185455329,+p@chr1:185455318..185455329
+
Mm9::chr1:38378826..38378842,-p@chr1:38378826..38378842
-
Mm9::chr1:71943019..71943026,-p@chr1:71943019..71943026
-
Mm9::chr1:79668659..79668663,-p3@Ap1s3
Mm9::chr2:103123759..103123777,-p5@Ehf
Mm9::chr2:120276468..120276479,+p13@Ganc
Mm9::chr2:49577301..49577323,+p@chr2:49577301..49577323
+
Mm9::chr3:103705733..103705744,+p9@Ptpn22
Mm9::chr3:105776708..105776727,+p1@Ovgp1
Mm9::chr3:105777892..105777895,+p@chr3:105777892..105777895
+
Mm9::chr3:105780704..105780709,+p4@Ovgp1
Mm9::chr3:105788001..105788016,+p@chr3:105788001..105788016
+
Mm9::chr3:105789073..105789080,+p@chr3:105789073..105789080
+
Mm9::chr3:105790295..105790298,+p@chr3:105790295..105790298
+
Mm9::chr3:108692717..108692726,-p2@Fndc7
Mm9::chr3:108692785..108692812,-p1@Fndc7
Mm9::chr3:108692830..108692835,-p3@Fndc7
Mm9::chr3:108692908..108692949,-p4@Fndc7
Mm9::chr3:141771414..141771429,-p@chr3:141771414..141771429
-
Mm9::chr3:53292564..53292583,+p2@Stoml3
Mm9::chr4:120766607..120766613,+p@chr4:120766607..120766613
+
Mm9::chr4:19779277..19779280,+p@chr4:19779277..19779280
+
Mm9::chr6:117887412..117887453,-p2@Fxyd4
Mm9::chr6:29210843..29210862,-p@chr6:29210843..29210862
-
Mm9::chr6:54287230..54287236,-p@chr6:54287230..54287236
-
Mm9::chr7:125792661..125792708,+p@chr7:125792661..125792708
+
Mm9::chr9:21163868..21163870,-p@chr9:21163868..21163870
-
Mm9::chr9:50256004..50256026,-p@chr9:50256004..50256026
-
Mm9::chr9:50283814..50283832,-p@chr9:50283814..50283832
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Mm9::chr9:57966625..57966639,-p4@Ccdc33


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
female reproductive system3.75e-399
female organism3.07e-3211
female reproductive organ4.22e-258
oviduct3.06e-231
uterus or analog1.39e-221
embryonic uterus1.79e-224
uterus1.79e-224
internal female genitalia3.19e-185
reproductive structure3.27e-1426
reproductive system3.27e-1426
internal genitalia1.26e-109
reproductive organ5.26e-0924
female gonad1.34e-083
adult organism1.20e-0751


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.18.77231e-06
MA0004.10.10817
MA0006.10.0215201
MA0007.10.455364
MA0009.10.22502
MA0014.10.109688
MA0017.10.194226
MA0019.10.118171
MA0024.10.196794
MA0025.10.396486
MA0027.11.72512
MA0028.10.0246138
MA0029.10.539828
MA0030.11.65529
MA0031.10.961834
MA0038.10.520346
MA0040.10.658739
MA0041.10.319176
MA0042.10.499372
MA0043.10.292217
MA0046.10.249246
MA0048.10.00542766
MA0050.10.139131
MA0051.10.072306
MA0052.10.238782
MA0055.10.0020136
MA0056.10
MA0057.10.00372616
MA0058.10.0494201
MA0059.10.515949
MA0060.10.00592343
MA0061.10.00151294
MA0063.10
MA0066.10.498538
MA0067.10.487659
MA0068.10.0122507
MA0069.11.24871
MA0070.10.656706
MA0071.11.78833
MA0072.10.226836
MA0073.15.59148e-05
MA0074.10.429704
MA0076.10.00699042
MA0077.10.609981
MA0078.10.606532
MA0081.10.351944
MA0083.10.79285
MA0084.10.77897
MA0087.10.722734
MA0088.10.00691204
MA0089.10
MA0090.11.37341
MA0091.10.283553
MA0092.10.673518
MA0093.10.0825187
MA0095.10
MA0098.10
MA0100.10.40833
MA0101.10.0602447
MA0103.10.594386
MA0105.10.00467474
MA0106.10.0892947
MA0107.10.0935003
MA0108.20.129922
MA0109.10
MA0111.10.0937272
MA0113.10.266767
MA0114.10.171448
MA0115.10.294251
MA0116.10.0214615
MA0117.10.271094
MA0119.10.161623
MA0122.10.285262
MA0124.10.443363
MA0125.10.383619
MA0130.10
MA0131.10.115897
MA0132.10
MA0133.10
MA0135.10.319042
MA0136.11.2314
MA0139.10.0358339
MA0140.10.182093
MA0141.11.67414
MA0142.10.157594
MA0143.10.597969
MA0144.10.177232
MA0145.10.51274
MA0146.15.27583e-06
MA0147.10.0427456
MA0148.10.847047
MA0149.11.57085
MA0062.20.00536354
MA0035.20.416757
MA0039.20.00103358
MA0138.20.11197
MA0002.20.157418
MA0137.20.242375
MA0104.20.00444911
MA0047.20.887841
MA0112.20.126074
MA0065.20.0776567
MA0150.10.0972072
MA0151.10
MA0152.10.519028
MA0153.10.331541
MA0154.10.0656802
MA0155.10.0335013
MA0156.10.622556
MA0157.10.431927
MA0158.10
MA0159.10.564094
MA0160.10.857837
MA0161.10
MA0162.13.12403e-06
MA0163.10.00242926
MA0164.11.23283
MA0080.21.14082
MA0018.20.0625066
MA0099.20.715168
MA0079.23.8523e-05
MA0102.20.827688
MA0258.11.08271
MA0259.10.0105798
MA0442.10
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