FFCP PHASE1:Hg19::chr2:216256353..216256364,+: Difference between revisions
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|id=chr2:216256353..216256364,+
|short_description=p@chr2:216256353..216256364,+
|description=CAGE_peak_at_chr2:216256353..216256364,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:216256353..216256364,+ | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_at_chr2:216256353..216256364,+ | |||
|id=chr2:216256353..216256364,+ | |||
|ontology_enrichment_celltype=CL:0000057!1.29e-22!75;CL:0000055!1.34e-20!180;CL:0002371!4.90e-15!591;CL:0000144!9.86e-14!625;CL:0002334!1.79e-12!12;CL:0002620!2.10e-11!23;CL:0000048!4.55e-11!430;CL:0000548!8.09e-11!679;CL:0000004!8.09e-11!679;CL:0000255!8.09e-11!679;CL:0000723!9.27e-11!436;CL:0000012!1.57e-10!682;CL:0000034!6.42e-10!444;CL:0002320!1.12e-07!365;CL:0000680!4.16e-07!57;CL:0000056!4.16e-07!57;CL:0000355!4.16e-07!57;CL:0000003!5.57e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0002334;9.12e-15;12!CL:0002580;1.13e-09;3!CL:0002579;1.28e-09;3!CL:0000135;1.88e-09;3!CL:0000388;1.88e-09;3!CL:0002617;3.37e-07;2!CL:0002620;6.38e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.39e-16,76;CL:0002334,1.11e-14,12;CL:0000135,5.64e-10,3;CL:0000388,5.64e-10,3;CL:0002580,7.40e-10,3;CL:0002579,3.24e-09,3;CL:0002617,2.61e-07,2;CL:0002620,4.26e-07,23;CL:0002320,6.06e-07,361;CL:0000134,9.13e-07,354;CL:0000048,9.16e-07,427 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.77e-08!83;UBERON:0002329!1.77e-08!83;UBERON:0003077!1.77e-08!83;UBERON:0003059!1.77e-08!83;UBERON:0007282!1.77e-08!83;UBERON:0009618!1.77e-08!83;UBERON:0007285!1.77e-08!83;UBERON:0002199!2.51e-08!45;UBERON:0002416!2.51e-08!45;UBERON:0002384!2.84e-08!375;UBERON:0004290!9.58e-08!70;UBERON:0002097!2.40e-07!40;UBERON:0004923!3.26e-07!57;UBERON:0005256!4.15e-07!143;UBERON:0003102!4.84e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.88e-09;3!UBERON:0000043;1.88e-09;3!UBERON:0007845;1.88e-09;3!UBERON:0004457;2.50e-08;9!UBERON:0000042;2.50e-08;9!UBERON:0003688;2.62e-08;6!UBERON:0002358;2.62e-08;6!UBERON:0003684;2.62e-08;6!UBERON:0001178;2.62e-08;6!UBERON:0000310;2.10e-07;10!UBERON:0005406;2.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,5.64e-10,3;UBERON:0000043,5.64e-10,3;UBERON:0007845,5.64e-10,3;UBERON:0003688,5.77e-08,6;UBERON:0002358,5.77e-08,6;UBERON:0003684,5.77e-08,6;UBERON:0001178,5.77e-08,6;UBERON:0002384,1.32e-07,371;UBERON:0000310,1.53e-07,10;UBERON:0005406,1.53e-07,2;UBERON:0003124,2.58e-07,7;UBERON:0001443,8.06e-07,11 | |||
|phase1_expression=1.45342703416445,5.35251309727458,0.704772020479856,2.00146596706261,0,2.61701557230111,0,0,0.783556884599516,0,0,0,0.527533956456907,0.123766352960047,0.331397375727916,0,1.80808358407193,1.46062018077475,0.487932798790507,0,0.204000691244253,0.313454721478088,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0,1.00267582127178,0.289693037921647,0,9.73269740605272,0,0.221729397462564,0.263504357079378,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0.183201743930407,0,0,0,2.98183171017191,0.633152558322899,0.926864265692532,2.0078563452417,1.06400514659507,0,0,3.20667812942308,0,0.404132016209064,0.326923806226917,0.151357427644931,2.30470369792,0,0.624320153660641,0,2.39117888882882,0.117434498643765,0.323745888736263,0.140450806702248,0,0.61417158655884,0,0,0.494533858557114,0,0.718618141816238,0,0,0,0,0.919463387397059,0.600952235626387,0.226864366320042,1.97328599257748,0.85422955527427,1.27159140695737,1.20036438433761,0.309157587715317,2.31876486041066,0.18611685633159,1.85653965465393,0.292311015483596,1.51460264546469,0.644349290496095,0.323292113637624,2.4850671476163,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,2.3218396401599,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,1.03993478527958,1.44331342025273,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,1.07470227243418,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.22001485746285,0.387815147273333,0,0,0,1.04007436911366,0.514414748524284,0,0.799266537048298,0.428933980974443,0,0,0.325736184293735,0.355391948742546,0.791951872933429,0.602878754119172,0,0.099972991182057,0,0,0,0.479249710983165,2.29723871668228,0,0.579125226670317,1.43833425785268,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,1.00034104211935,0.271265023699736,1.66376689224646,2.49800584316026,0.946214490203608,1.28855556491985,0.300946099727719,0,0,0.664225598535437,0,0,0,0.686286847621712,0,0,0,0,1.66435439510497,1.20956117331872,1.48864684691266,1.38115775959256,5.89386198309454,1.02511319404561,1.02341449813341,3.69964018630297,2.96836132889982,0.771048469013278,0.887808626565635,0.410635780069046,0.519254429183621,1.27831416305955,0.120859449591622,3.00759705454927,0.0920809889358963,0,0.364182336013434,0.393373244878272,0.451199612907412,0.231046011313244,0,0,0,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0.924291702687866,0.307007349452259,0.413509717453592,0.537101224341368,1.45016693914229,0.426133137080504,0.445160178233687,0.495854746082934,0.576570202095319,0,0.809262246844399,0,3.77774816196768,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0,0.255897791311334,0,0.318203247925937,0,0.359744915166629,0,0.706874414074119,0,0,0.421258456238981,0,0.731140468893853,2.11300293513511,0,0.848432591722276,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0.286822704408103,0.0982490410131212,0,0,0.211107635297664,2.30506425071931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0.307160702099232,0,0,1.33570446027487,0,0,0,0,0,0,0,1.24415835064723,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,3.50901275705111,0.366390373607449,21.854425816764,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.720599767084807,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,0.681552087141687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04478362020812,1.40227985908335,2.77402930751307,1.13641803165053,2.26411111577318,3.55924488638614,0.228840068396924,2.26846385644859,0,0,0,0.449803112163605,0,0,1.06336685823198,2.08698024724694,0,0.761610424337591,0.406870733204662,0.181848659202559,0.644463342254931,0,1.19428766609585,0.400027764663154,0.343395705182793,0.673498977531838,0,0,0,0,0,0,0.244736704506468,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0.982829546539238,0,0,0,0,0,0,0,0,0,0,0,0.629063767423586,0,0,0,0.123935764259002,0,1.27201740261367,0,0,2.46873160583479,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0.115525666150338,0.762764190934334,0,0,0.0752103283492573,1.21023041222112,0,0,0.163771917510097,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0.171488009437418,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.62164849248911,0.3414369541879,0,0,0,0,0,0.22910686854405,0,0,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| ||
|short_description=p@chr2:216256353..216256364,+ | |||
}} | }} |
Latest revision as of 06:06, 29 July 2015
Short description: | p@chr2:216256353..216256364, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:216256353..216256364, + |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.39e-16 | 76 |
preadipocyte | 1.11e-14 | 12 |
fibrocyte | 5.64e-10 | 3 |
tendon cell | 5.64e-10 | 3 |
preadipocyte of the breast | 7.40e-10 | 3 |
omentum preadipocyte | 3.24e-09 | 3 |
adipocyte of breast | 2.61e-07 | 2 |
skin fibroblast | 4.26e-07 | 23 |
connective tissue cell | 6.06e-07 | 361 |
mesenchymal cell | 9.13e-07 | 354 |
multi fate stem cell | 9.16e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 5.64e-10 | 3 |
tendon | 5.64e-10 | 3 |
regular connective tissue | 5.64e-10 | 3 |
omentum | 5.77e-08 | 6 |
peritoneum | 5.77e-08 | 6 |
abdominal cavity | 5.77e-08 | 6 |
visceral peritoneum | 5.77e-08 | 6 |
connective tissue | 1.32e-07 | 371 |
breast | 1.53e-07 | 10 |
perirenal fat | 1.53e-07 | 2 |
chorion | 2.58e-07 | 7 |
chest | 8.06e-07 | 11 |