FFCP PHASE1:Hg19::chr4:157892471..157892493,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:157892471..157892493,-
|short_description=p8@PDGFC
|description=CAGE_peak_8_at_PDGFC_5end
|association_with_transcript=-4bp_to_ENST00000274071_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56034 | |EntrezGene=56034 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8801 | |HGNC=8801 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NRA1 | |UniProt=Q9NRA1 | ||
|association_with_transcript=-4bp_to_ENST00000274071_5end | |||
|cluster_id=chr4:157892471..157892493,- | |||
|description=CAGE_peak_8_at_PDGFC_5end | |||
|id=chr4:157892471..157892493,- | |||
|ontology_enrichment_celltype=CL:0000055!2.87e-10!180;CL:0000057!4.52e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000064;4.55e-07;3!CL:0000067;4.55e-07;3!CL:0005012;4.55e-07;3!CL:0002304;4.55e-07;3!CL:1000507;6.92e-07;10!CL:1000494;6.92e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,4.45e-07,10;CL:1000494,4.45e-07,10;CL:0000064,4.60e-07,3;CL:0000067,4.60e-07,3;CL:0005012,4.60e-07,3;CL:0002304,4.60e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.44e-07!365;UBERON:0007625!7.43e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;4.23e-15;11!UBERON:0001456;1.12e-09;21!UBERON:0000019;2.78e-09;19!UBERON:0000047;2.78e-09;19!UBERON:0004088;2.78e-09;19!UBERON:0010230;2.78e-09;19!UBERON:0000970;1.10e-08;20!UBERON:0000488;1.11e-08;4!UBERON:0002104;3.82e-08;21!UBERON:0001801;3.27e-07;14!UBERON:0000020;3.27e-07;23!UBERON:0001778;4.55e-07;3!UBERON:0001775;4.55e-07;3!UBERON:0004211;6.92e-07;10!UBERON:0009773;6.92e-07;10!UBERON:0001231;6.92e-07;10!UBERON:0004810;6.92e-07;10!UBERON:0001032;8.33e-07;24!UBERON:0004456;8.33e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,2.96e-15,11;UBERON:0001456,4.47e-09,22;UBERON:0000019,9.47e-09,20;UBERON:0000047,9.47e-09,20;UBERON:0010312,9.47e-09,20;UBERON:0004088,9.47e-09,20;UBERON:0010230,9.47e-09,20;UBERON:0003072,9.47e-09,20;UBERON:0004128,9.47e-09,20;UBERON:0003071,9.47e-09,20;UBERON:0000488,1.01e-08,4;UBERON:0000970,3.31e-08,21;UBERON:0002104,3.31e-08,21;UBERON:0001801,3.23e-07,14;UBERON:0004810,4.45e-07,10;UBERON:0001778,4.60e-07,3;UBERON:0001775,4.60e-07,3;UBERON:0000020,7.37e-07,24;UBERON:0001032,7.37e-07,24;UBERON:0004456,7.37e-07,24 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0.247532705920093,0,0,0,0,0.487932798790507,1.60057375499824,2.04000691244253,0.626909442956176,2.0036519099174,0.958120975510189,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0.587200878669695,0,0,0,1.11957737119962,1.29557466407592,1.03030227053675,0,0,0,0,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0,0,0,0,0.434377689410233,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,1.0843174571537,0,0.869079113764942,1.5905718941022,0.486634870302636,3.59232305223458,4.43458794925128,6.76327849837071,0.130979075497713,0,0.370784442784429,0,0.522389211897802,0.398873881556595,0.238490624305342,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.633152558322899,0.529636723252875,0.286836620748814,0,0,1.06748995729705,0.98667019366864,0,0,0.326923806226917,0.151357427644931,0.576175924479999,0.468642863667593,0.624320153660641,0,0.747243402759005,0.23486899728753,0.161872944368132,0.702254033511242,0,0.368502951935304,0,0,0.494533858557114,0.910161361938026,0.718618141816238,0,1.12606667884768,1.10825646193673,0.438977620880838,0,0.300476117813194,0.340296549480063,2.51145489964407,1.2813443329114,0.423863802319124,3.90118424909723,1.8549455262919,1.8034837803194,1.30281799432113,2.53164498361899,0.68205903612839,2.27190396819703,0.552299391853796,0,2.84007674013291,0.503760491138201,0.508681776931463,0.386521706326594,0,0,0.121973706129595,0,0.348581828608555,0.414644220061482,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,2.57351715447788,0,0,0.301586917234893,0,1.3032332212413,0,2.88662684050547,1.15930404975077,1.40890433082986,0,0.462985512576611,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0.358234090811393,0.290633938513962,0,0,0,0.621984346622316,0.864719720501769,0,0,0,0,0,0,0,0,0.448524337381443,0,0.2933531432838,0.775630294546667,0,0.845302752556,1.59562869950922,1.04007436911366,1.80045161983499,2.83698264046557,1.3321108950805,0,0,0,0,0.710783897485092,0,0.301439377059586,0,0,0,0,0,0,0,0,1.15825045334063,2.4657158706046,0.895304816199478,0,0,0,0,3.55732473911449,1.30139853857622,0.773288812777695,1.00509759200609,0.637938751653163,0,0,0,0,0.500170521059677,0.813795071099207,0,0.535286966391485,0.157702415033935,1.05427273493442,0.300946099727719,0,0,4.64957918974806,2.21243002250044,0.434418072340414,0,0.343143423810856,0.206768026122887,0,0,0,1.66435439510497,0,0.496215615637554,0.767309866440312,0,0,0.511707249066704,0,0,0.925258162815933,0.887808626565635,1.31403449622095,0.519254429183621,0.581051892299796,0.120859449591622,0,0.0920809889358963,0.229628896329213,0.728364672026868,0.262248829918848,1.35359883872224,1.84836809050595,0.784349769176855,1.46139224653261,1.68882606228601,0,0,0.215915916102139,0,1.35473218771926,1.00337954770971,0,0,1.34324852833307,0,0,3.59030175162945,1.31205858279882,1.62689197332152,0.412164046590889,2.38080608527693,1.73269949833235,0,0,0,2.41676795730305,0.154048617114644,0,0.689182862422653,0.644521469209642,0.580066775656914,0.426133137080504,0.801288320820636,0,0.768760269460425,0.255225424989168,0.30347334256665,0.464845549297286,0,0.6970372701606,0,0,0,0.18532421910392,0.572499546967965,0,0.632758849437452,0.190630193923825,0.511795582622668,1.71175595213568,0,0,1.07923474549989,1.64722217841633,0.942499218765491,0,0,0,0.48763373908959,0,0,1.50149902548784,0.565621727814851,0,0.551365343546124,0,0,0.578775534266688,0,0.202910376962704,0,0.563391205064483,0.860468113224309,0.392996164052485,0,0.709522128141196,0.211107635297664,0,0,0.699869440489966,0.0962221127255121,0,1.08890984861323,0.659006605437454,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,1.49553699578462,0,0.245040215981032,0,0,0,0,0.59873811429845,0,0,0,0,0.228234679033192,0,2.50634477090067,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0.270455678475983,0.33307196799782,1.4098700508785,0,0.146508179271894,6.3107471309747,0,0,0,0,0,0,0.844016498463076,1.66963057534359,0,0,0.597743964753209,0.276283915531148,0,2.14764233254525,0,0.933118762985422,0.359473404589307,0,0,0.0986434056369336,0,0,1.93866549219044,0.185536196323703,1.99613798001194,0,0.174919999992391,0,0.682760689712998,0.762760950878299,0,0,0,1.38899995946634,0,0,0,0.110579259931225,0,0.438770794307945,0,0.139423744278603,0.384751292518985,0.455768223388005,0,0,0,0.31900115973192,2.74792780205587,0,0,0,0.664846727600626,0,0,0,0,0.317873157960757,0.843992258112108,1.14262965711403,0,0.216388639742091,0,0,0,0,0,0,0.337005664903385,2.40773294189637,0.468528891450678,0,0,3.3989253134773,0,1.20990716048664,2.75465485467441,0.126373159256976,0,0.207376382794494,0,0,0.627865836814451,0,0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| ||
|short_description=p8@PDGFC | |||
}} | }} |
Latest revision as of 09:19, 16 September 2015
Short description: | p8@PDGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PDGFC_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENST00000274071_5end |
EntrezGene: | PDGFC |
HGNC: | 8801 |
UniProt: | Q9NRA1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 4.45e-07 | 10 |
nephron tubule epithelial cell | 4.45e-07 | 10 |
ciliated cell | 4.60e-07 | 3 |
ciliated epithelial cell | 4.60e-07 | 3 |
multi-ciliated epithelial cell | 4.60e-07 | 3 |
non-pigmented ciliary epithelial cell | 4.60e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 2.96e-15 | 11 |
face | 4.47e-09 | 22 |
camera-type eye | 9.47e-09 | 20 |
simple eye | 9.47e-09 | 20 |
immature eye | 9.47e-09 | 20 |
ocular region | 9.47e-09 | 20 |
eyeball of camera-type eye | 9.47e-09 | 20 |
optic cup | 9.47e-09 | 20 |
optic vesicle | 9.47e-09 | 20 |
eye primordium | 9.47e-09 | 20 |
atypical epithelium | 1.01e-08 | 4 |
eye | 3.31e-08 | 21 |
visual system | 3.31e-08 | 21 |
anterior segment of eyeball | 3.23e-07 | 14 |
nephron tubule epithelium | 4.45e-07 | 10 |
ciliary epithelium | 4.60e-07 | 3 |
ciliary body | 4.60e-07 | 3 |
sense organ | 7.37e-07 | 24 |
sensory system | 7.37e-07 | 24 |
entire sense organ system | 7.37e-07 | 24 |