FFCP PHASE1:Hg19::chr4:8873545..8873583,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3166 | |EntrezGene=3166 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5017 | |HGNC=5017 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP08 | |UniProt=Q9NP08 | ||
|association_with_transcript=-2bp_to_ENST00000400677,NM_018942,uc003izz.1_5end | |association_with_transcript=-2bp_to_ENST00000400677,NM_018942,uc003izz.1_5end | ||
|cluster_id=chr4:8873545..8873583,- | |||
|coexpression_cluster_id=C369 | |coexpression_cluster_id=C369 | ||
|description=CAGE_peak_1_at_HMX1_5end | |description=CAGE_peak_1_at_HMX1_5end |
Latest revision as of 06:18, 19 September 2015
Short description: | p1@HMX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMX1_5end |
Coexpression cluster: | C369_Lens_eye_Ciliary_retina_H9_Retinal_Renal |
Association with transcript: | -2bp_to_ENST00000400677, NM_018942, uc003izz.1_5end |
EntrezGene: | HMX1 |
HGNC: | 5017 |
UniProt: | Q9NP08 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p1@HMX1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 6.42e-19 | 3 |
ciliated epithelial cell | 6.42e-19 | 3 |
multi-ciliated epithelial cell | 6.42e-19 | 3 |
non-pigmented ciliary epithelial cell | 6.42e-19 | 3 |
columnar/cuboidal epithelial cell | 7.52e-10 | 27 |
neurectodermal cell | 8.44e-08 | 59 |
serous secreting cell | 1.86e-07 | 1 |
neurecto-epithelial cell | 3.69e-07 | 20 |
pigment cell (sensu Vertebrata) | 6.49e-07 | 1 |
iris pigment epithelial cell | 6.49e-07 | 1 |
Showing 1 to 10 of 13 entries
Ontology term | p-value | n |
---|---|---|
atypical epithelium | 4.22e-24 | 4 |
eye | 1.99e-21 | 21 |
visual system | 1.99e-21 | 21 |
pigment epithelium of eye | 5.23e-19 | 11 |
ciliary epithelium | 6.42e-19 | 3 |
ciliary body | 6.42e-19 | 3 |
sense organ | 1.47e-18 | 24 |
sensory system | 1.47e-18 | 24 |
entire sense organ system | 1.47e-18 | 24 |
camera-type eye | 9.27e-18 | 20 |
Showing 1 to 10 of 40 entries
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.16e-09 | 6 |
ovary epithelial cancer | 1.86e-07 | 1 |
skin squamous cell carcinoma | 8.67e-07 | 1 |
keratoacanthoma | 8.67e-07 | 1 |
Showing 1 to 4 of 4 entries