FFCP PHASE1:Hg19::chr5:155754113..155754123,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:155754113..155754123,+
|short_description=p4@SGCD
|description=CAGE_peak_4_at_SGCD_5end
|association_with_transcript=155bp_to_ENST00000524347_5end
|Entrez...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6444 | |EntrezGene=6444 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10807 | |HGNC=10807 | ||
|TSSclassifier=strong | |||
|UniProt=E5RI34 | |UniProt=E5RI34 | ||
|association_with_transcript=155bp_to_ENST00000524347_5end | |||
|cluster_id=chr5:155754113..155754123,+ | |||
|coexpression_cluster_id=C4479 | |||
|description=CAGE_peak_4_at_SGCD_5end | |||
|id=chr5:155754113..155754123,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.64e-22!180;CL:0000057!1.66e-16!75;CL:0002620!1.05e-12!23;CL:0000136!1.63e-08!15 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.11e-17;23!CL:0000153;3.85e-11;9!CL:0000447;3.85e-11;9!CL:0000327;4.34e-10;15!CL:0000499;6.86e-10;28!CL:0000138;2.76e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,3.71e-17,23;CL:0000057,8.84e-12,76;CL:0000153,4.09e-11,9;CL:0000447,4.09e-11,9;CL:0000327,4.69e-10,15;CL:0000499,5.15e-10,28;CL:0000058,2.53e-09,6;CL:0000138,2.53e-09,6;CL:0000136,4.03e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.07e-12;5!DOID:450;2.07e-12;5!DOID:66;2.07e-12;5!DOID:423;2.07e-12;5!DOID:0080000;2.07e-12;5!DOID:11722;2.07e-12;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.33e-12,5;DOID:450,2.33e-12,5;DOID:66,2.33e-12,5;DOID:423,2.33e-12,5;DOID:0080000,2.33e-12,5;DOID:11722,2.33e-12,5 | |||
|ontology_enrichment_uberon=UBERON:0000475!7.45e-12!365;UBERON:0002097!2.49e-10!40;UBERON:0000914!3.63e-10!83;UBERON:0002329!3.63e-10!83;UBERON:0003077!3.63e-10!83;UBERON:0003059!3.63e-10!83;UBERON:0007282!3.63e-10!83;UBERON:0009618!3.63e-10!83;UBERON:0007285!3.63e-10!83;UBERON:0002199!3.85e-10!45;UBERON:0002416!3.85e-10!45;UBERON:0003102!7.07e-10!95;UBERON:0007023!2.29e-09!115;UBERON:0004290!1.44e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.02e-13;41!UBERON:0002199;1.06e-10;46!UBERON:0002416;1.06e-10;46!UBERON:0003102;6.44e-08;50!UBERON:0001134;3.82e-07;16!UBERON:0002036;3.82e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.95e-17,41;UBERON:0002199,9.62e-15,46;UBERON:0002416,9.62e-15,46;UBERON:0003102,3.98e-12,99 | |||
|phase1_expression=0.54503513781167,0.642301571672949,1.26858963686374,1.0007329835313,0.893922188854576,3.48935409640147,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0.331397375727916,0,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,2.1686349143074,3.50936537445123,1.59331170856906,3.9764297352555,4.37971383272372,0.283604451492204,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.662045904066094,0.286836620748814,0.354668382198357,0.560677600142307,0,0,0.311211035399766,0,0,0.454072282934794,0,0,0.624320153660641,0,0.298897361103602,0.939475989150119,0.323745888736263,0.421352420106746,1.02077085627447,0.491337269247072,0.929932030581889,3.56400857184616,2.71993622206413,0,0,0.673344455816265,0.375355559615893,0.831192346452549,1.75591048352335,2.45190236639216,2.55404700141215,0.340296549480063,5.38168907066586,8.11518077510556,5.29829752898905,4.20127534518163,4.12210116953756,4.89517026086695,5.95573940261087,4.72573730275545,3.89748020644795,3.5340728394176,7.36399189138395,1.13152239773168,14.2003837006646,8.06016785821122,0.67824236924195,0,0,0,0,0,0,0,0.252320850875628,0,4.69348596989448,1.28648187638577,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52394946301206,0,1.17217447210047,1.71072446022705,0.925447434329912,1.8020583470635,0,0.112131084345361,0,0,0.904902010304444,0,0,0.797814349754612,0,0.257207374262142,0,0,0.57191197463259,0,0,0,0.355391948742546,0,0.301439377059586,0,0,0,0,0,0.479249710983165,1.14861935834114,1.42636905040718,2.17171960001369,0.410952645100767,4.83464600747718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0.234282829985426,1.20378439891088,6.82222512167955,0,0,0.553107505625109,1.82455590382974,0.195801157462741,0.686286847621712,0,0,0,0,0,0,0.992431231275107,0.767309866440312,0.841980283299221,0.896974044789907,5.11707249066703,0.965123526861645,0,0,0.177561725313127,0.246381468041427,0,0.348631135379878,0,0,0,2.52591785962135,0,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.54941678891006,1.15513299888823,0,0,0,1.83674364755032,0.154048617114644,0.921022048356777,0.413509717453592,0.644521469209642,0.290033387828457,0.426133137080504,3.73934549716297,0,0,0,0,0,1.88887408098384,0.6970372701606,0,0,0,0.9266210955196,0.143124886741991,0.372158369359667,0.632758849437452,0,0,0,0.318203247925937,0,0.539617372749944,0.823611089208164,0.353437207037059,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0.438450885253763,0,0.655894752046633,0.202910376962704,0.6196469961995,1.40847801266121,0,0,1.07001315444375,0.709522128141196,2.32218398827431,1.31717957183961,0,0.699869440489966,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.281338832821026,0,0,0,1.9924798825107,0,0,0,0,13.0636626817959,0.0898683511473268,0,0,0.394573622547734,0,0,0,0.556608588971108,0,0,0,0.724999575434793,0,0,0,0,0,0.694499979733169,0.885741385813839,0,0,0,0,0.658156191461918,0,0,0.769502585037971,0.113942055847001,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,1.22206028986725,0,0,0,0.808813595768125,1.60515529459758,0.468528891450678,0,0,0,0.394584402849391,0,0,1.39010475182674,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0.51595809741485,0,0,0,0.484945082442097,0,0.225980740780532,0,0,0.253243183823515,0,0,0.640358984218058,0,0,0,0,0,0,0,0.67952103036807,0.836822770498666,0,0.288950589901519,0.600420288709789,0.273810757783986,0,0.429765441419957,0,0,1.3749625440701,0,0.599037001496973,3.004582336956,0.669514372325618,0.940568614814168,2.16179930125442,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.209818352539992,0,0,0,1.42939065274673,0.662091970365432,0,0.542999601753713,0.864221491201268,0.326587360109409,0,0,0.511164065356265,0,0,0,0.387848869084652,0.26446520348538,0,0,0.106787412567695,1.25763444079733,0.414239055347196,0.496166021811951,0,0,0,1.63205341010842,0.7520696820681,1.53172788381731,1.31149052283922,0,0,0,0.1251909307065,0,0.776503360757966,0.745156835296601,0.138348634936231,0,0.758245587708239,1.42732666772484,0,0,0,0.74627401443437,2.33713309847224,0.554805861502613,1.89403005275089,1.25783950876288,0,0.915360273587694,0.302461847526478,0.777186002913902,0.147855149989634,0.159296767163702,0.449803112163605,0.155262956876259,0.414706207840855,2.12673371646396,0,0.300515217994437,0.761610424337591,2.44122439922797,0.363697318405119,0.107410557042488,0,2.3885753321917,0.800055529326307,1.03018711554838,2.35724642136143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,9.87492642333915,1.8374728641192,0.0642292250964595,0,0,0.205116364240755,0,0.207471757392654,0.161475645631851,1.42769420259154,0,0,0,0,3.05105676373734,0,2.18807844327902,0.526472298444801,0,0,0,0,0,0.202612753855184,0,0.413373593002368,0.126831620387814,0.546974809018219,0,0.496211178389294,0,0,0.535701835878287,0,0,0.227662191351298,0,0,0,0.339848664884159,0,0,0,0.549451649953598,0,0,2.73947616152849,0,0,1.28657779517981,0.158013611732727,0,0.521574816907738,0.801711364730253,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,2.58971534875158,1.12929087541872,0,2.91426595835484,0,0,0,0,0.219881033490858,0,0.154348316215889,0.655678681511872,0,1.71603825227734,0,0.392616934229891,0,0.8453114551668,0.509781344063451,0.0939839179798536,0.515663103788617,0,0,0,0,0,0.458729283404541,0.573358332605805,0.315543124386369,0.135982980381829,0,1.0580536810308,3.34795516350076,1.84870251452567,0.865253124247578,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0.829169439458779,0.517164979309476,1.70587185520785,1.66645102024618,0.0645889098360061,0.0620747142958579,0,0.190941474834495,1.0105859447911,0,1.71116650542641,0.202056159043763,0.143444410785353,3.32660356546013,0,0,1.9307228228694,0,7.03922827210363,1.34465588601153,2.44137706989443,0,0.603821380773079,0 | |phase1_expression=0.54503513781167,0.642301571672949,1.26858963686374,1.0007329835313,0.893922188854576,3.48935409640147,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0.331397375727916,0,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,2.1686349143074,3.50936537445123,1.59331170856906,3.9764297352555,4.37971383272372,0.283604451492204,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.662045904066094,0.286836620748814,0.354668382198357,0.560677600142307,0,0,0.311211035399766,0,0,0.454072282934794,0,0,0.624320153660641,0,0.298897361103602,0.939475989150119,0.323745888736263,0.421352420106746,1.02077085627447,0.491337269247072,0.929932030581889,3.56400857184616,2.71993622206413,0,0,0.673344455816265,0.375355559615893,0.831192346452549,1.75591048352335,2.45190236639216,2.55404700141215,0.340296549480063,5.38168907066586,8.11518077510556,5.29829752898905,4.20127534518163,4.12210116953756,4.89517026086695,5.95573940261087,4.72573730275545,3.89748020644795,3.5340728394176,7.36399189138395,1.13152239773168,14.2003837006646,8.06016785821122,0.67824236924195,0,0,0,0,0,0,0,0.252320850875628,0,4.69348596989448,1.28648187638577,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52394946301206,0,1.17217447210047,1.71072446022705,0.925447434329912,1.8020583470635,0,0.112131084345361,0,0,0.904902010304444,0,0,0.797814349754612,0,0.257207374262142,0,0,0.57191197463259,0,0,0,0.355391948742546,0,0.301439377059586,0,0,0,0,0,0.479249710983165,1.14861935834114,1.42636905040718,2.17171960001369,0.410952645100767,4.83464600747718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0.234282829985426,1.20378439891088,6.82222512167955,0,0,0.553107505625109,1.82455590382974,0.195801157462741,0.686286847621712,0,0,0,0,0,0,0.992431231275107,0.767309866440312,0.841980283299221,0.896974044789907,5.11707249066703,0.965123526861645,0,0,0.177561725313127,0.246381468041427,0,0.348631135379878,0,0,0,2.52591785962135,0,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.54941678891006,1.15513299888823,0,0,0,1.83674364755032,0.154048617114644,0.921022048356777,0.413509717453592,0.644521469209642,0.290033387828457,0.426133137080504,3.73934549716297,0,0,0,0,0,1.88887408098384,0.6970372701606,0,0,0,0.9266210955196,0.143124886741991,0.372158369359667,0.632758849437452,0,0,0,0.318203247925937,0,0.539617372749944,0.823611089208164,0.353437207037059,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0.438450885253763,0,0.655894752046633,0.202910376962704,0.6196469961995,1.40847801266121,0,0,1.07001315444375,0.709522128141196,2.32218398827431,1.31717957183961,0,0.699869440489966,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.281338832821026,0,0,0,1.9924798825107,0,0,0,0,13.0636626817959,0.0898683511473268,0,0,0.394573622547734,0,0,0,0.556608588971108,0,0,0,0.724999575434793,0,0,0,0,0,0.694499979733169,0.885741385813839,0,0,0,0,0.658156191461918,0,0,0.769502585037971,0.113942055847001,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,1.22206028986725,0,0,0,0.808813595768125,1.60515529459758,0.468528891450678,0,0,0,0.394584402849391,0,0,1.39010475182674,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0.51595809741485,0,0,0,0.484945082442097,0,0.225980740780532,0,0,0.253243183823515,0,0,0.640358984218058,0,0,0,0,0,0,0,0.67952103036807,0.836822770498666,0,0.288950589901519,0.600420288709789,0.273810757783986,0,0.429765441419957,0,0,1.3749625440701,0,0.599037001496973,3.004582336956,0.669514372325618,0.940568614814168,2.16179930125442,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.209818352539992,0,0,0,1.42939065274673,0.662091970365432,0,0.542999601753713,0.864221491201268,0.326587360109409,0,0,0.511164065356265,0,0,0,0.387848869084652,0.26446520348538,0,0,0.106787412567695,1.25763444079733,0.414239055347196,0.496166021811951,0,0,0,1.63205341010842,0.7520696820681,1.53172788381731,1.31149052283922,0,0,0,0.1251909307065,0,0.776503360757966,0.745156835296601,0.138348634936231,0,0.758245587708239,1.42732666772484,0,0,0,0.74627401443437,2.33713309847224,0.554805861502613,1.89403005275089,1.25783950876288,0,0.915360273587694,0.302461847526478,0.777186002913902,0.147855149989634,0.159296767163702,0.449803112163605,0.155262956876259,0.414706207840855,2.12673371646396,0,0.300515217994437,0.761610424337591,2.44122439922797,0.363697318405119,0.107410557042488,0,2.3885753321917,0.800055529326307,1.03018711554838,2.35724642136143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,9.87492642333915,1.8374728641192,0.0642292250964595,0,0,0.205116364240755,0,0.207471757392654,0.161475645631851,1.42769420259154,0,0,0,0,3.05105676373734,0,2.18807844327902,0.526472298444801,0,0,0,0,0,0.202612753855184,0,0.413373593002368,0.126831620387814,0.546974809018219,0,0.496211178389294,0,0,0.535701835878287,0,0,0.227662191351298,0,0,0,0.339848664884159,0,0,0,0.549451649953598,0,0,2.73947616152849,0,0,1.28657779517981,0.158013611732727,0,0.521574816907738,0.801711364730253,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,2.58971534875158,1.12929087541872,0,2.91426595835484,0,0,0,0,0.219881033490858,0,0.154348316215889,0.655678681511872,0,1.71603825227734,0,0.392616934229891,0,0.8453114551668,0.509781344063451,0.0939839179798536,0.515663103788617,0,0,0,0,0,0.458729283404541,0.573358332605805,0.315543124386369,0.135982980381829,0,1.0580536810308,3.34795516350076,1.84870251452567,0.865253124247578,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0.829169439458779,0.517164979309476,1.70587185520785,1.66645102024618,0.0645889098360061,0.0620747142958579,0,0.190941474834495,1.0105859447911,0,1.71116650542641,0.202056159043763,0.143444410785353,3.32660356546013,0,0,1.9307228228694,0,7.03922827210363,1.34465588601153,2.44137706989443,0,0.603821380773079,0 | ||
|short_description=p4@SGCD | |||
}} | }} |
Latest revision as of 12:49, 16 September 2015
Short description: | p4@SGCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SGCD_5end |
Coexpression cluster: | C4479_Fibroblast_basal_normal_Chondrocyte_heart_diaphragm_tongue |
Association with transcript: | 155bp_to_ENST00000524347_5end |
EntrezGene: | SGCD |
HGNC: | 10807 |
UniProt: | E5RI34 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 3.71e-17 | 23 |
fibroblast | 8.84e-12 | 76 |
GAG secreting cell | 4.09e-11 | 9 |
carbohydrate secreting cell | 4.09e-11 | 9 |
extracellular matrix secreting cell | 4.69e-10 | 15 |
stromal cell | 5.15e-10 | 28 |
chondroblast | 2.53e-09 | 6 |
chondrocyte | 2.53e-09 | 6 |
fat cell | 4.03e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skin of body | 2.95e-17 | 41 |
integument | 9.62e-15 | 46 |
integumental system | 9.62e-15 | 46 |
surface structure | 3.98e-12 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.33e-12 | 5 |
myotonic disease | 2.33e-12 | 5 |
muscle tissue disease | 2.33e-12 | 5 |
myopathy | 2.33e-12 | 5 |
muscular disease | 2.33e-12 | 5 |
myotonic dystrophy | 2.33e-12 | 5 |