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Coexpression cluster:C48: Difference between revisions

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{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0,0,

Latest revision as of 10:17, 17 September 2013


Full id: C48_smooth_bladder_esophagus_colon_penis_aorta_uterus



Phase1 CAGE Peaks

Hg19::chr10:29787015..29787017,-p@chr10:29787015..29787017
-
Hg19::chr10:29792125..29792126,-p@chr10:29792125..29792126
-
Hg19::chr10:30025857..30025872,-p2@SVIL
Hg19::chr10:30132189..30132193,-p@chr10:30132189..30132193
-
Hg19::chr10:30132220..30132231,-p@chr10:30132220..30132231
-
Hg19::chr10:91567053..91567066,+p@chr10:91567053..91567066
+
Hg19::chr10:97167699..97167703,-p@chr10:97167699..97167703
-
Hg19::chr10:97175924..97175942,-p15@SORBS1
Hg19::chr10:97262585..97262611,-p@chr10:97262585..97262611
-
Hg19::chr10:97262800..97262820,-p@chr10:97262800..97262820
-
Hg19::chr10:97262828..97262865,-p@chr10:97262828..97262865
-
Hg19::chr10:97278763..97278775,-p@chr10:97278763..97278775
-
Hg19::chr11:10715117..10715144,-p4@MRVI1
Hg19::chr11:12696579..12696611,+p4@TEAD1
Hg19::chr11:1507941..1507960,-p3@MOB2
Hg19::chr11:1507965..1507986,-p1@MOB2
Hg19::chr11:1507987..1508013,-p2@MOB2
Hg19::chr12:104645296..104645338,+p11@TXNRD1
Hg19::chr12:41582739..41582757,+p5@PDZRN4
Hg19::chr12:54823108..54823119,+p@chr12:54823108..54823119
+
Hg19::chr12:54823136..54823163,+p@chr12:54823136..54823163
+
Hg19::chr12:9268707..9268758,-p6@A2M
Hg19::chr14:32897580..32897592,+p@chr14:32897580..32897592
+
Hg19::chr14:32902636..32902695,+p5@AKAP6
Hg19::chr14:52164675..52164686,+p36@FRMD6
Hg19::chr14:94443105..94443116,-p5@ASB2
Hg19::chr15:42875413..42875427,+p@chr15:42875413..42875427
+
Hg19::chr15:63176225..63176249,-p1@ENST00000557994
Hg19::chr15:63335899..63336001,+p11@TPM1
Hg19::chr15:63889557..63889568,+p3@FBXL22
Hg19::chr15:63889577..63889595,+p1@FBXL22
Hg19::chr15:99645277..99645292,+p1@SYNM
Hg19::chr15:99653880..99653891,+p@chr15:99653880..99653891
+
Hg19::chr15:99666936..99666947,+p@chr15:99666936..99666947
+
Hg19::chr15:99669639..99669652,+p@chr15:99669639..99669652
+
Hg19::chr15:99669659..99669674,+p@chr15:99669659..99669674
+
Hg19::chr15:99669699..99669783,+p@chr15:99669699..99669783
+
Hg19::chr15:99669806..99669835,+p@chr15:99669806..99669835
+
Hg19::chr15:99669879..99669900,+p@chr15:99669879..99669900
+
Hg19::chr15:99669921..99669958,+p@chr15:99669921..99669958
+
Hg19::chr15:99669965..99669991,+p@chr15:99669965..99669991
+
Hg19::chr15:99669992..99670021,+p@chr15:99669992..99670021
+
Hg19::chr15:99670028..99670044,+p@chr15:99670028..99670044
+
Hg19::chr15:99670079..99670092,+p@chr15:99670079..99670092
+
Hg19::chr15:99670119..99670141,-p@chr15:99670119..99670141
-
Hg19::chr15:99670161..99670170,+p@chr15:99670161..99670170
+
Hg19::chr15:99670207..99670264,-p@chr15:99670207..99670264
-
Hg19::chr15:99670284..99670300,-p@chr15:99670284..99670300
-
Hg19::chr15:99670317..99670328,-p@chr15:99670317..99670328
-
Hg19::chr16:15797749..15797765,+p@chr16:15797749..15797765
+
Hg19::chr16:15797790..15797816,+p1@AK130790
Hg19::chr16:15797821..15797861,-p@chr16:15797821..15797861
-
Hg19::chr16:15797824..15797833,+p2@AK130790
Hg19::chr16:15797863..15797870,-p@chr16:15797863..15797870
-
Hg19::chr16:15797878..15797905,-p@chr16:15797878..15797905
-
Hg19::chr16:15797919..15797924,-p@chr16:15797919..15797924
-
Hg19::chr16:15797928..15797939,-p@chr16:15797928..15797939
-
Hg19::chr16:15797970..15797977,-p@chr16:15797970..15797977
-
Hg19::chr16:15802680..15802707,-p@chr16:15802680..15802707
-
Hg19::chr16:15808786..15808840,-p@chr16:15808786..15808840
-
Hg19::chr16:15808857..15808889,-p@chr16:15808857..15808889
-
Hg19::chr16:15808909..15808922,-p@chr16:15808909..15808922
-
Hg19::chr16:15809011..15809030,+p@chr16:15809011..15809030
+
Hg19::chr16:15809051..15809092,-p@chr16:15809051..15809092
-
Hg19::chr16:15809052..15809096,+p@chr16:15809052..15809096
+
Hg19::chr16:15809101..15809136,-p@chr16:15809101..15809136
-
Hg19::chr16:15811027..15811088,-p@chr16:15811027..15811088
-
Hg19::chr16:15811111..15811125,-p@chr16:15811111..15811125
-
Hg19::chr16:15811123..15811133,+p@chr16:15811123..15811133
+
Hg19::chr16:15811128..15811139,-p@chr16:15811128..15811139
-
Hg19::chr16:15811166..15811214,-p@chr16:15811166..15811214
-
Hg19::chr16:15812199..15812231,-p@chr16:15812199..15812231
-
Hg19::chr16:15812270..15812301,-p@chr16:15812270..15812301
-
Hg19::chr16:15813103..15813119,-p@chr16:15813103..15813119
-
Hg19::chr16:15813127..15813149,-p@chr16:15813127..15813149
-
Hg19::chr16:15813157..15813170,-p@chr16:15813157..15813170
-
Hg19::chr16:15813438..15813495,+p@chr16:15813438..15813495
+
Hg19::chr16:15813481..15813492,-p@chr16:15813481..15813492
-
Hg19::chr16:15813497..15813520,-p@chr16:15813497..15813520
-
Hg19::chr16:15813524..15813554,-p@chr16:15813524..15813554
-
Hg19::chr16:15813555..15813566,-p@chr16:15813555..15813566
-
Hg19::chr16:15814032..15814045,-p17@MYH11
Hg19::chr16:15814151..15814161,-p2@AK092551
p2@AX747595
Hg19::chr16:15814166..15814179,-p3@AK092551
p3@AX747595
Hg19::chr16:15814689..15814725,+p@chr16:15814689..15814725
+
Hg19::chr16:15814747..15814761,-p@chr16:15814747..15814761
-
Hg19::chr16:15814800..15814816,-p@chr16:15814800..15814816
-
Hg19::chr16:15814822..15814844,-p@chr16:15814822..15814844
-
Hg19::chr16:15814873..15814889,-p1@AF249898
Hg19::chr16:15814890..15814899,-p3@AF249898
Hg19::chr16:15814910..15814916,-p2@AF249898
Hg19::chr16:15815310..15815325,-p25@MYH11
Hg19::chr16:15815326..15815343,-p23@MYH11
Hg19::chr16:15815349..15815385,-p9@MYH11
Hg19::chr16:15815395..15815406,-p26@MYH11
Hg19::chr16:15815412..15815423,-p14@MYH11
Hg19::chr16:15815450..15815461,-p28@MYH11
Hg19::chr16:15815462..15815472,-p38@MYH11
Hg19::chr16:15815473..15815482,-p32@MYH11
Hg19::chr16:15818053..15818096,-p6@MYH11
Hg19::chr16:15818108..15818115,-p37@MYH11
Hg19::chr16:15818124..15818133,+p@chr16:15818124..15818133
+
Hg19::chr16:15818142..15818168,-p15@MYH11
Hg19::chr16:15818174..15818188,-p16@MYH11
Hg19::chr16:15818196..15818208,-p20@MYH11
Hg19::chr16:15818233..15818245,-p27@MYH11
Hg19::chr16:15818265..15818272,-p48@MYH11
Hg19::chr16:15818539..15818554,-p24@MYH11
Hg19::chr16:15818577..15818591,-p12@MYH11
Hg19::chr16:15818773..15818811,-p1@AF249897
Hg19::chr16:15820761..15820768,-p@chr16:15820761..15820768
-
Hg19::chr16:15820766..15820811,+p@chr16:15820766..15820811
+
Hg19::chr16:15820799..15820824,-p@chr16:15820799..15820824
-
Hg19::chr16:15820844..15820882,+p@chr16:15820844..15820882
+
Hg19::chr16:15826443..15826458,+p@chr16:15826443..15826458
+
Hg19::chr16:15826470..15826488,-p@chr16:15826470..15826488
-
Hg19::chr16:15826494..15826505,-p@chr16:15826494..15826505
-
Hg19::chr16:15826512..15826526,-p@chr16:15826512..15826526
-
Hg19::chr16:15826530..15826568,-p@chr16:15826530..15826568
-
Hg19::chr16:15829266..15829294,-p@chr16:15829266..15829294
-
Hg19::chr16:15829297..15829328,-p@chr16:15829297..15829328
-
Hg19::chr16:15829348..15829359,-p@chr16:15829348..15829359
-
Hg19::chr16:15829360..15829387,-p@chr16:15829360..15829387
-
Hg19::chr16:15829419..15829433,-p@chr16:15829419..15829433
-
Hg19::chr16:15831378..15831420,-p7@MYH11
Hg19::chr16:15831428..15831450,+p@chr16:15831428..15831450
+
Hg19::chr16:15832455..15832468,+p@chr16:15832455..15832468
+
Hg19::chr16:15832464..15832487,-p@chr16:15832464..15832487
-
Hg19::chr16:15832475..15832517,+p@chr16:15832475..15832517
+
Hg19::chr16:15832501..15832534,-p@chr16:15832501..15832534
-
Hg19::chr16:15833896..15833926,+p@chr16:15833896..15833926
+
Hg19::chr16:15833935..15833958,-p11@MYH11
Hg19::chr16:15833939..15833958,+p@chr16:15833939..15833958
+
Hg19::chr16:15833966..15833987,-p13@MYH11
Hg19::chr16:15833988..15834021,+p@chr16:15833988..15834021
+
Hg19::chr16:15833994..15834029,-p5@MYH11
Hg19::chr16:15834034..15834043,-p34@MYH11
Hg19::chr16:15834044..15834051,-p31@MYH11
Hg19::chr16:15835324..15835381,+p@chr16:15835324..15835381
+
Hg19::chr16:15835360..15835386,-p8@MYH11
Hg19::chr16:15835403..15835416,+p@chr16:15835403..15835416
+
Hg19::chr16:15835405..15835422,-p10@MYH11
Hg19::chr16:15835437..15835521,-p3@MYH11
Hg19::chr16:15835617..15835635,+p@chr16:15835617..15835635
+
Hg19::chr16:15835639..15835654,+p@chr16:15835639..15835654
+
Hg19::chr16:15835648..15835720,-p4@MYH11
Hg19::chr16:15835662..15835678,+p@chr16:15835662..15835678
+
Hg19::chr16:15835741..15835755,-p19@MYH11
Hg19::chr16:15839031..15839100,-p@chr16:15839031..15839100
-
Hg19::chr16:15841460..15841489,-p3@AK097036
Hg19::chr16:15841514..15841593,-p1@AK097036
Hg19::chr16:15841766..15841789,-p2@AK097036
Hg19::chr16:15841794..15841805,-p4@AK097036
Hg19::chr16:15841937..15841955,-p@chr16:15841937..15841955
-
Hg19::chr16:15844042..15844070,-p@chr16:15844042..15844070
-
Hg19::chr16:15844088..15844115,-p@chr16:15844088..15844115
-
Hg19::chr16:15844138..15844148,-p@chr16:15844138..15844148
-
Hg19::chr16:15847266..15847275,+p@chr16:15847266..15847275
+
Hg19::chr16:15850261..15850268,-p@chr16:15850261..15850268
-
Hg19::chr16:15851853..15851869,-p@chr16:15851853..15851869
-
Hg19::chr16:15853461..15853471,-p@chr16:15853461..15853471
-
Hg19::chr16:15853473..15853490,-p@chr16:15853473..15853490
-
Hg19::chr16:15853520..15853570,-p@chr16:15853520..15853570
-
Hg19::chr16:15853578..15853588,-p@chr16:15853578..15853588
-
Hg19::chr16:15854424..15854436,-p@chr16:15854424..15854436
-
Hg19::chr16:15854464..15854501,-p@chr16:15854464..15854501
-
Hg19::chr16:15857728..15857745,-p@chr16:15857728..15857745
-
Hg19::chr16:15865458..15865471,-p@chr16:15865458..15865471
-
Hg19::chr16:15865517..15865522,-p@chr16:15865517..15865522
-
Hg19::chr16:15865541..15865556,-p@chr16:15865541..15865556
-
Hg19::chr16:15869976..15869997,-p@chr16:15869976..15869997
-
Hg19::chr16:15870001..15870016,-p@chr16:15870001..15870016
-
Hg19::chr16:15872630..15872668,+p@chr16:15872630..15872668
+
Hg19::chr16:15876262..15876272,-p@chr16:15876262..15876272
-
Hg19::chr16:15876274..15876292,-p@chr16:15876274..15876292
-
Hg19::chr16:15876303..15876309,-p@chr16:15876303..15876309
-
Hg19::chr16:15876312..15876327,-p@chr16:15876312..15876327
-
Hg19::chr16:15876328..15876337,-p@chr16:15876328..15876337
-
Hg19::chr16:15880477..15880494,+p@chr16:15880477..15880494
+
Hg19::chr16:15880505..15880514,-p@chr16:15880505..15880514
-
Hg19::chr16:15880518..15880552,-p@chr16:15880518..15880552
-
Hg19::chr16:15880563..15880580,-p@chr16:15880563..15880580
-
Hg19::chr16:15892461..15892466,-p@chr16:15892461..15892466
-
Hg19::chr16:15894551..15894587,-p@chr16:15894551..15894587
-
Hg19::chr16:15900134..15900136,-p@chr16:15900134..15900136
-
Hg19::chr16:15917144..15917203,-p@chr16:15917144..15917203
-
Hg19::chr16:15917170..15917188,+p@chr16:15917170..15917188
+
Hg19::chr16:15917192..15917214,+p@chr16:15917192..15917214
+
Hg19::chr16:15917230..15917245,-p@chr16:15917230..15917245
-
Hg19::chr16:15917262..15917278,-p@chr16:15917262..15917278
-
Hg19::chr16:15931825..15931851,-p2@AB384538
Hg19::chr16:15931865..15931923,+p@chr16:15931865..15931923
+
Hg19::chr16:15931898..15931907,-p12@AB384538
Hg19::chr16:15931926..15931954,-p1@AB384538
Hg19::chr16:15931993..15932018,-p4@AB384538
Hg19::chr16:15932019..15932029,-p9@AB384538
Hg19::chr16:15932089..15932104,-p6@AB384538
Hg19::chr16:15932105..15932131,-p3@AB384538
Hg19::chr16:15950876..15950892,-p1@MYH11
Hg19::chr16:15951157..15951166,-p18@MYH11
Hg19::chr16:15951167..15951206,-p2@MYH11
Hg19::chr16:15951284..15951289,-p22@MYH11
Hg19::chr16:15951984..15952016,-p@chr16:15951984..15952016
-
Hg19::chr17:3824984..3824995,-p@chr17:3824984..3824995
-
Hg19::chr17:3825021..3825034,-p@chr17:3825021..3825034
-
Hg19::chr17:42875115..42875157,-p@chr17:42875115..42875157
-
Hg19::chr17:42875167..42875178,-p@chr17:42875167..42875178
-
Hg19::chr17:47723943..47723952,-p5@SPOP
Hg19::chr17:49119298..49119314,-p11@SPAG9
Hg19::chr17:77639420..77639437,-p@chr17:77639420..77639437
-
Hg19::chr18:34304815..34304834,-p@chr18:34304815..34304834
-
Hg19::chr19:11649659..11649674,+p1@CNN1
Hg19::chr19:11651942..11651960,+p2@CNN1
Hg19::chr19:11657686..11657699,+p@chr19:11657686..11657699
+
Hg19::chr19:11658681..11658690,+p@chr19:11658681..11658690
+
Hg19::chr19:11660164..11660202,+p@chr19:11660164..11660202
+
Hg19::chr19:11660381..11660401,+p@chr19:11660381..11660401
+
Hg19::chr19:11660405..11660426,+p@chr19:11660405..11660426
+
Hg19::chr19:11660478..11660503,+p@chr19:11660478..11660503
+
Hg19::chr19:11660512..11660530,+p@chr19:11660512..11660530
+
Hg19::chr19:11660553..11660590,+p@chr19:11660553..11660590
+
Hg19::chr19:11660575..11660624,-p1@CU692455
Hg19::chr19:11660642..11660652,+p@chr19:11660642..11660652
+
Hg19::chr19:11660779..11660792,+p@chr19:11660779..11660792
+
Hg19::chr19:38743855..38743867,-p@chr19:38743855..38743867
-
Hg19::chr19:38743878..38743928,-p@chr19:38743878..38743928
-
Hg19::chr19:47157969..47157980,-p5@DACT3
Hg19::chr1:10682996..10683025,+p@chr1:10682996..10683025
+
Hg19::chr1:10683081..10683110,+p@chr1:10683081..10683110
+
Hg19::chr1:151585832..151585849,-p@chr1:151585832..151585849
-
Hg19::chr1:201869373..201869403,+p@chr1:201869373..201869403
+
Hg19::chr1:201869426..201869438,-p@chr1:201869426..201869438
-
Hg19::chr1:201869437..201869617,+p@chr1:201869437..201869617
+
Hg19::chr1:201869455..201869470,-p@chr1:201869455..201869470
-
Hg19::chr1:201869495..201869508,-p@chr1:201869495..201869508
-
Hg19::chr1:201869527..201869538,-p@chr1:201869527..201869538
-
Hg19::chr1:201869539..201869548,-p@chr1:201869539..201869548
-
Hg19::chr1:201869552..201869567,-p@chr1:201869552..201869567
-
Hg19::chr1:201869589..201869614,-p@chr1:201869589..201869614
-
Hg19::chr1:201869639..201869675,-p@chr1:201869639..201869675
-
Hg19::chr1:201869680..201869692,-p@chr1:201869680..201869692
-
Hg19::chr1:201869706..201869717,-p@chr1:201869706..201869717
-
Hg19::chr1:201869744..201869763,-p@chr1:201869744..201869763
-
Hg19::chr1:201869809..201869840,+p@chr1:201869809..201869840
+
Hg19::chr1:201915266..201915272,-p2@CU687334
Hg19::chr1:201915320..201915328,-p1@CU687334
Hg19::chr1:201915565..201915581,-p2@LMOD1
Hg19::chr1:201915590..201915722,-p1@LMOD1
Hg19::chr1:202508583..202508607,+p@chr1:202508583..202508607
+
Hg19::chr1:202509306..202509345,+p6@PPP1R12B
Hg19::chr20:43192823..43192835,+p5@PKIG
Hg19::chr20:48747662..48747704,-p3@TMEM189
p4@TMEM189-UBE2V1
Hg19::chr21:30144419..30144442,-p@chr21:30144419..30144442
-
Hg19::chr21:30144444..30144467,-p@chr21:30144444..30144467
-
Hg19::chr21:30144478..30144487,-p@chr21:30144478..30144487
-
Hg19::chr22:31487162..31487174,+p18@SMTN
Hg19::chr22:31487308..31487328,+p2@SMTN
Hg19::chr22:31487711..31487721,+p@chr22:31487711..31487721
+
Hg19::chr22:44708688..44708699,-p5@KIAA1644
Hg19::chr22:44708700..44708718,-p4@KIAA1644
Hg19::chr22:44708735..44708746,-p2@KIAA1644
Hg19::chr2:114299044..114299050,+p1@ENST00000421970
Hg19::chr2:170590515..170590528,+p5@KLHL23
Hg19::chr2:220312468..220312502,+p@chr2:220312468..220312502
+
Hg19::chr2:40739609..40739628,-p10@SLC8A1
Hg19::chr2:74120126..74120142,+p1@ACTG2
Hg19::chr2:74128392..74128423,+p2@ACTG2
Hg19::chr2:74128444..74128468,+p4@ACTG2
Hg19::chr2:74128496..74128516,+p5@ACTG2
Hg19::chr2:74128518..74128535,+p3@ACTG2
Hg19::chr2:74129486..74129511,+p3@AK129589
Hg19::chr2:74129522..74129538,+p2@AK129589
Hg19::chr2:74129546..74129563,+p1@AK129589
Hg19::chr2:74129552..74129589,-p@chr2:74129552..74129589
-
Hg19::chr2:74135792..74135799,+p@chr2:74135792..74135799
+
Hg19::chr2:74135806..74135809,+p@chr2:74135806..74135809
+
Hg19::chr2:74135827..74135858,+p@chr2:74135827..74135858
+
Hg19::chr2:74135865..74135877,+p@chr2:74135865..74135877
+
Hg19::chr2:74135892..74135905,-p@chr2:74135892..74135905
-
Hg19::chr2:74136186..74136244,+p@chr2:74136186..74136244
+
Hg19::chr2:74140623..74140649,+p@chr2:74140623..74140649
+
Hg19::chr2:74140660..74140677,+p@chr2:74140660..74140677
+
Hg19::chr2:74140688..74140715,+p@chr2:74140688..74140715
+
Hg19::chr2:74140719..74140727,+p@chr2:74140719..74140727
+
Hg19::chr2:74141862..74141891,+p@chr2:74141862..74141891
+
Hg19::chr2:74141903..74141921,+p@chr2:74141903..74141921
+
Hg19::chr2:74141926..74141963,+p@chr2:74141926..74141963
+
Hg19::chr3:123333041..123333079,-p1@AL833897
Hg19::chr3:123419830..123419889,-p3@MYLK
Hg19::chr3:123419995..123420006,-p19@MYLK
Hg19::chr3:151921698..151921717,+p@chr3:151921698..151921717
+
Hg19::chr3:187871598..187871620,+p4@LPP
Hg19::chr3:187930406..187930417,+p8@LPP
Hg19::chr3:187930440..187930477,+p3@LPP
Hg19::chr3:187930491..187930511,+p2@LPP
Hg19::chr3:187930643..187930689,+p10@LPP
Hg19::chr3:187930719..187930729,+p61@LPP
Hg19::chr3:188124074..188124110,-p@chr3:188124074..188124110
-
Hg19::chr3:188202375..188202397,+p6@LPP
Hg19::chr3:188242448..188242474,+p@chr3:188242448..188242474
+
Hg19::chr3:188327022..188327079,-p@chr3:188327022..188327079
-
Hg19::chr3:188604285..188604297,+p4@uc003fru.1
Hg19::chr3:57875738..57875802,+p2@SLMAP
Hg19::chr3:57892058..57892063,+p@chr3:57892058..57892063
+
Hg19::chr3:64546686..64546707,+p4@ADAMTS9-AS1
Hg19::chr3:71294213..71294240,-p30@FOXP1
Hg19::chr4:119918859..119918865,-p@chr4:119918859..119918865
-
Hg19::chr4:119951422..119951434,+p@chr4:119951422..119951434
+
Hg19::chr4:129574959..129574990,+p@chr4:129574959..129574990
+
Hg19::chr4:177198663..177198680,-p4@ASB5
Hg19::chr4:186577832..186577907,-p1@SORBS2
Hg19::chr4:186577924..186577938,-p12@SORBS2
Hg19::chr5:148786423..148786453,+p1@MIR143HG
Hg19::chr5:148786518..148786535,+p2@MIR143HG
Hg19::chr5:148788326..148788331,+p@chr5:148788326..148788331
+
Hg19::chr5:148789465..148789468,+p1@AK124798
Hg19::chr5:148796893..148796907,+p@chr5:148796893..148796907
+
Hg19::chr5:148806476..148806483,+p@chr5:148806476..148806483
+
Hg19::chr5:169816297..169816319,-p3@KCNMB1
Hg19::chr5:169816353..169816389,-p1@KCNMB1
Hg19::chr5:169816392..169816413,-p4@KCNMB1
Hg19::chr5:169816419..169816429,-p5@KCNMB1
Hg19::chr5:169816432..169816437,-p6@KCNMB1
Hg19::chr5:169816462..169816506,+p1@ENST00000518387
Hg19::chr5:52083958..52083976,+p6@ITGA1
Hg19::chr5:59630373..59630388,-p@chr5:59630373..59630388
-
Hg19::chr5:59744512..59744531,-p31@PDE4D
Hg19::chr6:168938239..168938246,+p@chr6:168938239..168938246
+
Hg19::chr6:34985044..34985072,+p@chr6:34985044..34985072
+
Hg19::chr6:99797083..99797125,-p12@C6orf168
Hg19::chr7:114054885..114054910,+p4@FOXP2
Hg19::chr7:114054917..114054938,+p8@FOXP2
Hg19::chr7:115863000..115863015,+p8@TES
Hg19::chr7:115863017..115863029,+p17@TES
Hg19::chr7:115863031..115863054,+p9@TES
Hg19::chr7:134618045..134618059,+p31@CALD1
Hg19::chr7:134618117..134618138,+p24@CALD1
Hg19::chr7:134618152..134618164,-p@chr7:134618152..134618164
-
Hg19::chr7:134618153..134618167,+p27@CALD1
Hg19::chr7:134618177..134618224,+p12@CALD1
Hg19::chr7:134618196..134618207,-p@chr7:134618196..134618207
-
Hg19::chr7:134618245..134618263,-p@chr7:134618245..134618263
-
Hg19::chr7:134618247..134618288,+p19@CALD1
Hg19::chr7:134618292..134618302,+p40@CALD1
Hg19::chr7:134618321..134618341,+p14@CALD1
Hg19::chr7:134618324..134618332,-p@chr7:134618324..134618332
-
Hg19::chr7:134618338..134618366,-p@chr7:134618338..134618366
-
Hg19::chr7:134618355..134618367,+p43@CALD1
Hg19::chr7:134618367..134618377,-p@chr7:134618367..134618377
-
Hg19::chr7:134618369..134618396,+p33@CALD1
Hg19::chr7:134618389..134618426,-p@chr7:134618389..134618426
-
Hg19::chr7:134618402..134618411,+p61@CALD1
Hg19::chr7:134618448..134618467,-p@chr7:134618448..134618467
-
Hg19::chr7:134618472..134618486,-p@chr7:134618472..134618486
-
Hg19::chr7:134618605..134618689,+p@chr7:134618605..134618689
+
Hg19::chr7:134618643..134618753,-p@chr7:134618643..134618753
-
Hg19::chr7:134618733..134618745,+p@chr7:134618733..134618745
+
Hg19::chr7:134618754..134618779,-p@chr7:134618754..134618779
-
Hg19::chr7:65215431..65215448,+p@chr7:65215431..65215448
+
Hg19::chr8:30241380..30241396,+p@chr8:30241380..30241396
+
Hg19::chr8:30365702..30365709,+p@chr8:30365702..30365709
+
Hg19::chr8:30376232..30376236,+p@chr8:30376232..30376236
+
Hg19::chr9:684309..684323,+p11@KANK1
Hg19::chr9:70971518..70971534,+p1@PGM5
Hg19::chrX:107464620..107464631,-p@chrX:107464620..107464631
-
Hg19::chrX:107464685..107464692,-p@chrX:107464685..107464692
-
Hg19::chrX:107681458..107681465,-p7@COL4A6
Hg19::chrX:107681486..107681503,-p4@COL4A6
Hg19::chrX:153218822..153218836,-p@chrX:153218822..153218836
-
Hg19::chrX:153602960..153602977,-p4@FLNA
Hg19::chrX:153602991..153603011,-p3@FLNA
Hg19::chrX:80457682..80457696,+p5@SH3BGRL


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
6.08435798160821e-101.925699301179e-077116Vascular smooth muscle contraction (KEGG):04270
0.0002782335742007770.02436627247562744200Focal adhesion (KEGG):04510
0.0003079465715719110.0243662724756274383Hypertrophic cardiomyopathy (HCM) (KEGG):05410
0.0003907237129996910.0274809011476449390Dilated cardiomyopathy (KEGG):05414
4.53597997803346e-060.0007178188315237955155Myometrial Relaxation and Contraction Pathways (Wikipathways):WP289
2.73950528584538e-050.00346821369188025337Sandbox Pathway (Wikipathways):WP4
0.0008096668539767950.04659264714248285466Hemostasis (Reactome):REACT_604
8.48701001558479e-155.37227733986517e-12849Muscle contraction (Reactome):REACT_17044
0.000712336841549920.04509092207011225IL-6 down reg. targets (Netpath):NetPath_18
1.5191901039302e-083.20549111929273e-068288{ACTB,297} (Static Module):NA
0.0001084707320847030.0114436622349362210{ROCK1,10} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003012muscle system process7.17758044022067e-11
GO:0006936muscle contraction7.17758044022067e-11
GO:0005515protein binding1.99726356249025e-06
GO:0008092cytoskeletal protein binding3.41526941867738e-06
GO:0003779actin binding3.80060767866034e-06
GO:0006939smooth muscle contraction1.08494206137411e-05
GO:0005856cytoskeleton3.42412418529582e-05
GO:0005516calmodulin binding4.1542266842341e-05
GO:0015629actin cytoskeleton6.84472069691412e-05
GO:0030036actin cytoskeleton organization and biogenesis0.000516257005885001
GO:0030029actin filament-based process0.000553522573894243
GO:0006937regulation of muscle contraction0.000553522573894243
GO:0008307structural constituent of muscle0.000640254860897684
GO:0030016myofibril0.00120233532117574
GO:0044449contractile fiber part0.00162991093467295
GO:0043292contractile fiber0.00174897131744444
GO:0003008system process0.00174897131744444
GO:0005913cell-cell adherens junction0.00287580698797806
GO:0005737cytoplasm0.00562887267665167
GO:0005523tropomyosin binding0.006597028072221
GO:0031032actomyosin structure organization and biogenesis0.006597028072221
GO:0016528sarcoplasm0.00812148027606994
GO:0016529sarcoplasmic reticulum0.00812148027606994
GO:0043232intracellular non-membrane-bound organelle0.00812148027606994
GO:0043228non-membrane-bound organelle0.00812148027606994
GO:0051015actin filament binding0.015752241114304
GO:0006928cell motility0.015752241114304
GO:0051674localization of cell0.015752241114304
GO:0032501multicellular organismal process0.015752241114304
GO:0007517muscle development0.015752241114304
GO:0048739cardiac muscle fiber development0.015752241114304
GO:0031034myosin filament assembly0.015752241114304
GO:0021757caudate nucleus development0.015752241114304
GO:0021758putamen development0.015752241114304
GO:0030241muscle thick filament assembly0.015752241114304
GO:0010037response to carbon dioxide0.015752241114304
GO:0031033myosin filament assembly or disassembly0.015752241114304
GO:0007010cytoskeleton organization and biogenesis0.015807135753828
GO:0030198extracellular matrix organization and biogenesis0.017184705374285
GO:0030017sarcomere0.0182334784381034
GO:0005912adherens junction0.0224666838176032
GO:0021756striatum development0.026477198365872
GO:0048857neural nucleus development0.026477198365872
GO:0005915zonula adherens0.026477198365872
GO:0007519skeletal muscle development0.0313231195138409
GO:0048251elastic fiber assembly0.0335863878673363
GO:0019959interleukin-8 binding0.0335863878673363
GO:0004687myosin light chain kinase activity0.0335863878673363
GO:0014866skeletal myofibril assembly0.0335863878673363
GO:0021544subpallium development0.0335863878673363
GO:0017114wide-spectrum protease inhibitor activity0.0335863878673363
GO:0006125thioredoxin pathway0.0335863878673363
GO:0006512ubiquitin cycle0.0363311256371492
GO:0051239regulation of multicellular organismal process0.0387886665319578
GO:0043062extracellular structure organization and biogenesis0.0387886665319578
GO:0005862muscle thin filament tropomyosin0.0387886665319578
GO:0004614phosphoglucomutase activity0.0387886665319578
GO:0045123cellular extravasation0.0387886665319578
GO:0043034costamere0.0387886665319578
GO:0004791thioredoxin-disulfide reductase activity0.0387886665319578
GO:0014706striated muscle development0.0393879784106538
GO:0022610biological adhesion0.0406253566131771
GO:0007155cell adhesion0.0406253566131771
GO:0015081sodium ion transmembrane transporter activity0.0447304760524728
GO:0005587collagen type IV0.0447304760524728
GO:0007160cell-matrix adhesion0.0457581429225451
GO:0031589cell-substrate adhesion0.0486661389173214
GO:0004862cAMP-dependent protein kinase inhibitor activity0.0498139395661742
GO:0016668oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor0.0498139395661742
GO:0030935sheet-forming collagen0.0498139395661742



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.11.35006e-15
MA0004.17.1042e-06
MA0006.10.0100721
MA0007.10.202568
MA0009.10.14777
MA0014.10
MA0017.10.192271
MA0019.10.108844
MA0024.10.00018603
MA0025.10.364427
MA0027.10.893371
MA0028.12.83347e-08
MA0029.10.0656872
MA0030.10.833082
MA0031.10.391337
MA0038.10.463159
MA0040.10.0699749
MA0041.10.681323
MA0042.12.5515
MA0043.10.148154
MA0046.10.239419
MA0048.10.75719
MA0050.11.29603
MA0051.10.700315
MA0052.10.0729115
MA0055.113.3822
MA0056.10
MA0057.13.47872e-06
MA0058.13.57564e-05
MA0059.11.07311e-05
MA0060.12.23411e-10
MA0061.10.0659822
MA0063.10
MA0066.10.0531236
MA0067.10.0279823
MA0068.10.124152
MA0069.10.232564
MA0070.10.510801
MA0071.10.292547
MA0072.10.00517867
MA0073.17.57479e-11
MA0074.10.0481618
MA0076.11.42398e-08
MA0077.10.0181641
MA0078.10.692448
MA0081.13.1593
MA0083.110.4219
MA0084.10.27425
MA0087.10.0193723
MA0088.11.23278
MA0089.10
MA0090.10.85115
MA0091.10.687045
MA0092.11.93464
MA0093.14.70438e-08
MA0095.10
MA0098.10
MA0100.10.106649
MA0101.12.5327e-05
MA0103.11.51592
MA0105.10.0104209
MA0106.11.45371
MA0107.14.9793e-06
MA0108.21.12543
MA0109.10
MA0111.10.507891
MA0113.10.19422
MA0114.10.152224
MA0115.10.0158471
MA0116.10.00347791
MA0117.10.335355
MA0119.10.175931
MA0122.10.393856
MA0124.10.0546767
MA0125.10.0825477
MA0130.10
MA0131.10.00187511
MA0132.10
MA0133.10
MA0135.10.00170045
MA0136.10.000432094
MA0139.10.0353443
MA0140.10.00585473
MA0141.11.3023
MA0142.10.123579
MA0143.11.87809
MA0144.10.877973
MA0145.10.0340881
MA0146.13.07318e-05
MA0147.12.72533e-09
MA0148.11.58213
MA0149.10.0546813
MA0062.23.98644e-10
MA0035.20.0226769
MA0039.20
MA0138.22.65733
MA0002.20.641054
MA0137.20.0053867
MA0104.22.73098e-09
MA0047.20.487261
MA0112.20.00491565
MA0065.23.0421
MA0150.10.137769
MA0151.10
MA0152.10.401743
MA0153.10.161696
MA0154.10.331575
MA0155.10.000118875
MA0156.17.76386e-05
MA0157.10.453976
MA0158.10
MA0159.10.0239574
MA0160.12.77519
MA0161.10
MA0162.10
MA0163.11.78234e-06
MA0164.10.0312872
MA0080.20.000127451
MA0018.20.0188674
MA0099.20.00701486
MA0079.20
MA0102.20.0943963
MA0258.10.0372401
MA0259.13.01724e-07
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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