UBERON:0002110: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0002110 | |id=UBERON:0002110 | ||
|is_a=UBERON: | |is_a=UBERON:0004119 ;;UBERON:0013765 ;;UBERON:0017672 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=gallbladder | |name=gallbladder | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000916;;UBERON:0001173 | |part_of=UBERON:0000916;;UBERON:0001173 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:10114;;UBPROP:0000001 "Organ attached to the liver which stores bile and empties into the duodenum via the bile duct as needed for digestion.[AAO]" xsd:string;;UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:10114;;UBPROP:0000001 "Organ attached to the liver which stores bile and empties into the duodenum via the bile duct as needed for digestion.[AAO]" xsd:string;;UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string | ||
Latest revision as of 17:26, 12 September 2014
| Name: | gallbladder | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]." [FMA:7202, Wikipedia:Gallbladder] | ||
| Xrefs: |
| ||
| Synonyms: |
"gall bladder" EXACT [] "vesica fellea; vesica biliaris" RELATED LATIN [Wikipedia:Gallbladder] | ||
| Comments: | Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) | ||
| Alt_id: | UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208 | ||
| Subset: |
organ_slim uberon_slim vertebrate_core |
200px-Abdomal_organs.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004119(endoderm-derived structure),UBERON:0013765(digestive system element),UBERON:0017672(abdominal viscera) |
|---|---|
| develops_from: | UBERON:0004912(biliary bud),UBERON:0006242(gall bladder primordium) |
| part_of: | UBERON:0000916(abdomen),UBERON:0001173(biliary tree) |
Children
| derives from: | FF:0010198 (human gall bladder - adult sample) |
|---|---|
| part of: | CL:1000415 (epithelial cell of gall bladder) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002110 (gallbladder), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:145127555..145127558,+#_413be64bdf0b645679af706b510beaba | p@chr3:145127555..145127558, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:193561605..193561612,-#_413be64bdf0b645679af706b510beaba | p3@ENST00000439074 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:103470614..103470619,-#_413be64bdf0b645679af706b510beaba | p17@CDC42BPB |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:42157397..42157411,-#_413be64bdf0b645679af706b510beaba | p@chr2:42157397..42157411, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:117626532..117626537,+#_413be64bdf0b645679af706b510beaba | p@chr4:117626532..117626537, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:38091563..38091607,+#_413be64bdf0b645679af706b510beaba | p@chr14:38091563..38091607, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:26491064..26491072,-#_413be64bdf0b645679af706b510beaba | p@chr4:26491064..26491072, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:189258158..189258183,-#_413be64bdf0b645679af706b510beaba | p@chr4:189258158..189258183, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr21:43783664..43783667,+#_413be64bdf0b645679af706b510beaba | p@chr21:43783664..43783667, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:25649889..25649911,-#_413be64bdf0b645679af706b510beaba | p@chr5:25649889..25649911, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:1252161..1252166,+#_413be64bdf0b645679af706b510beaba | p@chr11:1252161..1252166, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:4100562..4100570,+#_413be64bdf0b645679af706b510beaba | p4@BC027448 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:26491064..26491072,-#_413be64bdf0b645679af706b510beaba | p@chr4:26491064..26491072, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr18:2351233..2351242,+#_413be64bdf0b645679af706b510beaba | p@chr18:2351233..2351242, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:95737958..95737978,+#_413be64bdf0b645679af706b510beaba | p@chr9:95737958..95737978, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:117626532..117626537,+#_413be64bdf0b645679af706b510beaba | p@chr4:117626532..117626537, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:103952998..103953003,-#_413be64bdf0b645679af706b510beaba | p@chr10:103952998..103953003, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:189258158..189258183,-#_413be64bdf0b645679af706b510beaba | p@chr4:189258158..189258183, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:42157172..42157179,-#_413be64bdf0b645679af706b510beaba | p@chr2:42157172..42157179, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:103470614..103470619,-#_413be64bdf0b645679af706b510beaba | p17@CDC42BPB |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:1247434..1247435,+#_413be64bdf0b645679af706b510beaba | p@chr11:1247434..1247435, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:1252161..1252166,+#_413be64bdf0b645679af706b510beaba | p@chr11:1252161..1252166, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:4100596..4100603,+#_413be64bdf0b645679af706b510beaba | p5@BC027448 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:38091563..38091607,+#_413be64bdf0b645679af706b510beaba | p@chr14:38091563..38091607, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:103952998..103953003,-#_413be64bdf0b645679af706b510beaba | p@chr10:103952998..103953003, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:4100562..4100570,+#_413be64bdf0b645679af706b510beaba | p4@BC027448 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:145127555..145127558,+#_413be64bdf0b645679af706b510beaba | p@chr3:145127555..145127558, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:193561605..193561612,-#_413be64bdf0b645679af706b510beaba | p3@ENST00000439074 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:42157397..42157411,-#_413be64bdf0b645679af706b510beaba | p@chr2:42157397..42157411, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr21:43783664..43783667,+#_413be64bdf0b645679af706b510beaba | p@chr21:43783664..43783667, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr18:2351233..2351242,+#_413be64bdf0b645679af706b510beaba | p@chr18:2351233..2351242, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:1247434..1247435,+#_413be64bdf0b645679af706b510beaba | p@chr11:1247434..1247435, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:42157172..42157179,-#_413be64bdf0b645679af706b510beaba | p@chr2:42157172..42157179, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:4100596..4100603,+#_413be64bdf0b645679af706b510beaba | p5@BC027448 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:95737958..95737978,+#_413be64bdf0b645679af706b510beaba | p@chr9:95737958..95737978, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:25649889..25649911,-#_413be64bdf0b645679af706b510beaba | p@chr5:25649889..25649911, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr17:79429043..79429051,-#_870d2f600bfe77f0f94baa18cb879f51 | p@chr17:79429043..79429051, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr17:79429043..79429051,-#_870d2f600bfe77f0f94baa18cb879f51 | p@chr17:79429043..79429051, - |
| 4.89e-53 | FFCP PHASE1:Hg19::chr11:111154964..111154975,+#_391594abcc235208f971631c9bb79801 | p4@C11orf53 |
| 4.89e-53 | FFCP PHASE2:Hg19::chr11:111154964..111154975,+#_391594abcc235208f971631c9bb79801 | p4@C11orf53 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:1247439..1247442,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr11:1247439..1247442, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:35871337..35871346,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr18:35871337..35871346, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:13191432..13191436,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr6:13191432..13191436, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:28401158..28401162,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr19:28401158..28401162, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:147645292..147645302,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr5:147645292..147645302, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:86501763..86501768,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p33@PRSS23 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:1262749..1262754,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr11:1262749..1262754, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chrX:29431271..29431280,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chrX:29431271..29431280, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr21:28226981..28227000,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr21:28226981..28227000, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:2351165..2351175,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr18:2351165..2351175, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr11:1263382..1263385, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:67559529..67559532,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr17:67559529..67559532, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:95737369..95737393,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p18@FGD3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:113448406..113448411,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p14@OAS2 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:114026271..114026287,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr7:114026271..114026287, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:187929602..187929615,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr1:187929602..187929615, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:124050589..124050596,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p15@BTBD16 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr18:35871337..35871346,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr18:35871337..35871346, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:1262749..1262754,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr11:1262749..1262754, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:124050589..124050596,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p15@BTBD16 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr11:1260725..1260734, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr18:2351165..2351175,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr18:2351165..2351175, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:13191432..13191436,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr6:13191432..13191436, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:28401158..28401162,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr19:28401158..28401162, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:147644551..147644576,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr5:147644551..147644576, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:190861941..190861951,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p3@FRG1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr21:43770332..43770340,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr21:43770332..43770340, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:114026271..114026287,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr7:114026271..114026287, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:111570472..111570478,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr5:111570472..111570478, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:86501763..86501768,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p33@PRSS23 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:187929602..187929615,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr1:187929602..187929615, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:95737369..95737393,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p18@FGD3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr11:1263382..1263385, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:1247439..1247442,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr11:1247439..1247442, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr11:1260725..1260734, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:147645292..147645302,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr5:147645292..147645302, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:113448406..113448411,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p14@OAS2 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:147644551..147644576,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr5:147644551..147644576, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chrX:29431271..29431280,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chrX:29431271..29431280, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr21:28226981..28227000,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr21:28226981..28227000, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:190861941..190861951,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p3@FRG1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr21:43770332..43770340,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr21:43770332..43770340, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr5:111570472..111570478, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:67559529..67559532,+#_c885c4a2deb9450aa0d9e9ef4ce0d2bd | p@chr17:67559529..67559532, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:175184241..175184250,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p14@FBXO8 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr5:498417..498421,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr5:498417..498421, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr14:47289644..47289662,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr14:47289644..47289662, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr18:61420303..61420306,+#_d9cf2bbf38313bd4cf61edad4ed983ae | p17@SERPINB7 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr16:34378161..34378168,+#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr16:34378161..34378168, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:66497726..66497737,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr6:66497726..66497737, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:106851639..106851650,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr3:106851639..106851650, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:228131903..228131923,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr1:228131903..228131923, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr18:69477752..69477762,+#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr18:69477752..69477762, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr7:117355942..117355945,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr7:117355942..117355945, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr19:36757642..36757645,+#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr19:36757642..36757645, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr17:68643476..68643477,+#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr17:68643476..68643477, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr17:37880326..37880328,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr17:37880326..37880328, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr2:27529092..27529098,+#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr2:27529092..27529098, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr5:499767..499777,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr5:499767..499777, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr22:50723475..50723477,-#_d9cf2bbf38313bd4cf61edad4ed983ae | p@chr22:50723475..50723477, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ attached to the liver which stores bile and empties into the duodenum via the bile duct as needed for digestion.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
