NonredundantMotifs:32: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;5793;326;326;353!2;7;7;7;6777!3;7;292;7;6492!4;1054;7;7;5730!5;727;7;6057;7!6;54;6730;7;7!7;6777;7;7;7!8;7;27;7;6757!9;4595;320;850;1033!10;2951;727;428;2692 | |||
|entrez_gene_id=5460 | |entrez_gene_id=5460 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO: | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PO2F2_si~PO2F1_f1 /HOMER:POU5F1_mES-Oct4-ChIP-Seq~POU2F2_Bcell-Oct2-ChIP-Seq /SWISSREGULON:POU2F1..3.p2~POU5F1.p2 /UNIPROBE:Oct-1;NBT06~Pou2f3_3986.2;CELL08~Pou2f2_3748.1;CELL08~Pou3f3_3235.2;CELL08~Mafb_secondary;SCI09 | ||
|name= | |name=non-redundant32 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
|representative_motif_id=POU5F1_mES-Oct4-ChIP-Seq | |representative_motif_id=POU5F1_mES-Oct4-ChIP-Seq | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant32
- db :HOMER
- Id :POU5F1_mES-Oct4-ChIP-Seq
- name :
- score :0.16105743559422916
- External refs:
- Internal refs:
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Sub Motif Members
