Personal tools

NonredundantMotifs:50: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
m (Autoedit moved page NonredundantMotifs:Motif50 to NonredundantMotifs:50 without leaving a redirect: NSchange)
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;59.405703;0.80491;27.344188;0.541267!2;42.982944;6.277354;0;38.83577!3;83.4973509999999;0;1.945583;2.653134!4;87.3588629999999;0;0;0.737205!5;4.316322;6.338996;0.544015;76.896735!6;0;2.921714;3.278825;81.8955289999999!7;43.489619;0;43.995291;0.611158!8;1.940413;0;86.1556549999999;0
|PWM=P0;A;C;G;T!1;1.505263157894738;0.5789473684210523;6.4842105263157865;2.431578947368417!2;0.0;9.147368421052631;1.0421052631578953;0.8105263157894738!3;0.0;0.0;0.0;11.0!4;9.957894736842107;0.0;1.0421052631578953;0.0!5;0.0;1.0421052631578953;0.0;9.957894736842107!6;2.0842105263157857;0.0;0.0;8.915789473684214!7;1.0421052631578953;0.0;0.0;9.957894736842107!8;4.168421052631583;0.0;0.0;6.831578947368428!9;1.0421052631578953;0.0;0.0;9.957894736842107!10;9.957894736842107;0.0;1.0421052631578953;0.0!11;0.9263157894736845;0.0;7.063157894736845;3.010526315789476!12;3.4736842105263213;4.284210526315786;2.663157894736845;0.5789473684210523
|entrez_gene_id=HOX(A4,D4)
|entrez_gene_id=4209
|motif_cluster_2013_march_motif_members= /JASPAR:MA0052.1;MEF2A /SWISSREGULON:HOX(A4,D4).p2~MEF2(A,B,C,D).p2 /HOMER:MEF2A_HL1-Mef2a.biotin-ChIP-Seq/ /HOCOMOCO:MEF2A_f1~MEF2C_f1~MEF2D_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:MEF2C_f1~MEF2D_f1~MEF2A_f1 /HOMER:MEF2A_HL1-Mef2a.biotin-ChIP-Seq/ /JASPAR:MA0052.1;MEF2A /SWISSREGULON:MEF2(A,B,C,D).p2~HOX(A4,D4).p2
|name=known50
|name=non-redundant50
|representative_motif_db=SWISSREGULON
|representative_motif_db=HOCOMOCO
|representative_motif_id=HOX(A4,D4).p2
|representative_motif_id=MEF2D_f1
|representative_motif_name=HOX(A4,D4)
|representative_motif_name=  
|score=0.18028113807999635
|score=0.1104659323757388
|uniprot_entry_name=HOX(A4,D4)
|uniprot_entry_name=MEF2D_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant50
  • db :HOCOMOCO
  • Id :MEF2D_f1
  • name  :
  • score :0.1104659323757388
  • External refs:
EntrezGene:4209
UniProt:4209

  • Internal refs:
EntrezGene:4209


Motif matrix
P0ACGT
11.5052631578947380.57894736842105236.48421052631578652.431578947368417
20.09.1473684210526311.04210526315789530.8105263157894738
30.00.00.011.0
49.9578947368421070.01.04210526315789530.0
50.01.04210526315789530.09.957894736842107
62.08421052631578570.00.08.915789473684214
71.04210526315789530.00.09.957894736842107
84.1684210526315830.00.06.831578947368428
91.04210526315789530.00.09.957894736842107
109.9578947368421070.01.04210526315789530.0
110.92631578947368450.07.0631578947368453.010526315789476
123.47368421052632134.2842105263157862.6631578947368450.5789473684210523

Sub Motif Members