FFCP PHASE1:Mm9::chr12:103521246..103521289,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=217835|HGNC=|UniProt=P59729,Q6PDX1,D3Z076|association_with_transcript=0bp_to_ENSMUST00000056950,NM_177620,uc007oub.1,uc007ouc.2_5end|description=CAGE_peak_3_at_Rin3_5end|id=chr12:103521246..103521289,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000466!1.62e-07!79;UBERON:0002107!5.50e-07!22;UBERON:0007499!5.50e-07!22;UBERON:0006925!5.50e-07!22;UBERON:0009497!5.50e-07!22;UBERON:0000015!5.50e-07!22;UBERON:0002423!5.50e-07!22;UBERON:0006235!5.50e-07!22;UBERON:0008835!5.50e-07!22;UBERON:0003894!5.50e-07!22;UBERON:0004161!5.50e-07!22;UBERON:0008836!5.50e-07!22|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.99e-07,22;UBERON:0007499,3.99e-07,22;UBERON:0006925,3.99e-07,22;UBERON:0009497,3.99e-07,22;UBERON:0000015,3.99e-07,22;UBERON:0002423,3.99e-07,22;UBERON:0006235,3.99e-07,22;UBERON:0008835,3.99e-07,22;UBERON:0003894,3.99e-07,22;UBERON:0004161,3.99e-07,22;UBERON:0008836,3.99e-07,22;UBERON:0009854,7.52e-07,23;UBERON:0009856,7.52e-07,23;UBERON:0003914,9.17e-07,47|phase1_expression=1.60148847104794,2.79180326111489,3.18499467572675,0,0,3.18970616632591,2.10251376535973,0.903863264091034,0.140788722151667,0.468129052643987,0.34243593645101,0.319088635981346,0.856003649656029,1.13646523144697,0,0.404950534779652,0,0.946386496074713,1.09691546884591,0,4.76242424845991,0.297872853602656,0,1.27993938234725,2.75291137280604,1.72269589234506,3.4460959692726,1.72376986148711,0.760093677825496,0.504060259519861,1.77384408524244,0,0,0,1.1554064790051,0.997407872150954,1.02084678131185,1.67412652294763,1.5626706890476,0.523523743973798,2.35292595212406,0.683045484958446,1.94204141212461,0.503587271902309,0,0,34.4252191513137,8.50298109883741,9.44650585758229,4.86074747685709,13.5786828976602,7.18762821824858,0.838913030288682,3.62681071005672,1.68046899571232,8.7468208252222,8.02293631828519,4.64104883049698,0.404632921719196,0,0.633831403506179,8.13226876965917,19.5644855144451,0,1.97773272513395,0.7104801149461,2.09720077362883,4.2264013585371,0.725827286159344,0.540023753326763,0.420649922702764,0.285650984403804,0.441737081903227,0.244981598429908,0.0958454710182364,0,0,1.0214987046815,0.307213066512487,0.131886287730194,0.274462930807229,0.52091337055676,0.558365998002762,2.8138130501584,1.37518422999129,1.47314292736834,0.996601765593721,0.745597783301202,1.06016670666458,1.20914496170857,8.11620568364698,6.0229671388697,5.439770669662,8.09554787456726,16.2444104361917,10.3046184032387,3.93244376368905,4.4311883870295,0.779358013808606,2.47337702157238,1.12674735821344,2.56652954828636,10.1922095882658,14.2213340630666,0.432982082022428,0.506719730950197,0,4.22480354960522,5.43769555659061,2.07818994690755,2.94925055502431,2.13125834818499,1.84492397804847,1.65794904607885,3.29248379979973,2.01066546127481,40.0455847729686,6.50697106139602,0,3.72063754879041,2.20841518460394,1.45462575940567,1.86391761218122,0.292780797011547,0.83778682725382,1.78819938646014,0.359445373517761,0.599902730993408,0.254140454146129,0.299581278809645,0.457500602818626,0.251308704225729,0,0.255715457330331,0.41557608911912,0.324482526135515,2.44414473240759,1.49288364732112,1.51633655060205,1.26265113531884,0.780722657776222,0.459804208866946,0.360124259610698,1.65775299619287,1.08858398642125,0.768682321709099,0.937017245597288,1.81092359517311,0.646703978798527,0.945530400839096,1.93546236580344,2.6303487891309,1.66828349535359,5.2237824978325,6.1734640922383,3.38358253591438,0,0.51469581422943,0.852490498186778,1.65700618028402,2.11073453982987,1.2604344302271,2.13070262026689,5.1158700254325,4.31947916084659,3.48800917125612,3.75582761959467,3.38619492864792,3.45575684818309,2.79084688934462,3.24275238183423,2.19299981137998,2.41505126820156,3.22095405024892,0.841159794256509,0.823236899034275,1.98251269790279,1.85115396664481,2.13288250535234,2.09013004674395,2.70621668776396,3.83198696784351,3.33567065767305,3.99473814836374,2.37264530772256,4.44687177754829,4.52403375840485,4.57599885694647,3.8992817423824,1.79763881730844,2.37751854862164,1.7922714592893,0.569003702859245,1.14248512609729,4.50830942692322,2.44381593414377,1.16371492300575,2.03393877681924,4.04713837595247,5.16635517928608,5.18095801876537,3.82531208157582,12.1545577105731,3.00321190288969,3.14494392181125,3.37293168577281,2.63718157805054,3.13530307678142,2.29163266603278,5.17853047411459,1.62135226775035,1.37280706594041,8.62609239164127,5.20997326735905,6.86482880852033,12.8815227753027,6.45830688678884,10.6137574699941,10.5309318394965,0.757965647081939,2.60743962307241,3.05541154395339,4.22442446919304,7.70528784232352,18.091316707337,14.0496226457615,8.98520321405289,8.858587585951,10.8429242687091,8.84861899464985,10.7064688756855,9.54683786637976,1.50791283939272,1.63171705145613,0,1.93155722413313,0.80275294993896,0.586058432961016,0,1.76729649043061,0.631016438832513,0,0.861693590931196,0.955875191810208,0.668396022247182,0.849229592366497,0.404810701674894,0,0.395287777946524,0.642642632843614,3.40656204499845,3.5613120733451,2.93196526836437,3.79431282836832,5.30980553359851,2.91336763385978,0.604647113929502,1.50884063804718,2.06711325016541,1.53717573971964,3.6179961043551,1.45413491791002,1.42598951353889,1.8962205476149,1.05418608574999,0,0.340439605753788,0.720244376125241,2.32845630808958,2.35770738534752,3.19212420556092,3.21063871683727,4.60737257685939,2.13125464380219,13.6109590676952,6.77862626764225,1.32317038832977,4.28704257647848,3.22928853391811,3.19658502119226,2.626191568069,2.79039529566604,4.37221254944776,0.927126510052548,1.19609616558497,3.714963623338,1.48155621895769,0.753473828018764,0.820165366326151,0.686334519619568,4.24946074984638,2.23922323717853,2.9021994498929,0,0.790839983952838,3.65975040828328,2.70013352054503,3.13632444021703,1.9652630737156,3.10187996685088,3.38879168473877,1.83229159388821,1.68499465279331,0,1.12738587736838,5.83114529571517,6.28742263736971,10.5003641705786,8.78286799648571,10.4752797804282,9.97536528488909,6.2498104725096,3.67007705489988,3.38217769156408,1.72818003754719,2.52808896502543,2.22997736819181,1.43795340030758,1.42912905275575,1.79026695667481,2.18549490259391,1.32214994471966,1.62458479892035,1.11063094942962,1.447929326445,1.31074040677893,2.14407337627455,1.6356013078856,1.16876902181569,2.26730383615211,9.76738194845885,12.5599399253266,12.2555769945777,1.9318959403219,11.2609485270709,2.38097111547445,1.07184189539533,1.00314420807073,0.564751842617067,0,0,0.343706364687375,0,0,0,0,0.453142408984205,1.03552062350364,0.93408612825759,1.99512436700516,0.682934423016537,2.43106717068294,2.51535795153579,3.8607136774503,2.22246727801615,3.29656091582231,3.20919209591815,3.28506375292937,4.81610669791456,3.77252682772152,2.80924522409647,3.58540853467268,4.13535376480416,3.81034953026459,4.1718357340148,2.31491064556446,4.53294490883637,3.23837624295674,4.80016953339582,3.72699192934609,2.14592570952589,3.92435324907287,3.57615645578256,3.72304274723377,3.10977553883713,3.41990624869196,2.8518863907631,7.2948495315506,3.6776855618494,4.13718825977367,3.27384834535751,2.47898945897546,3.47231899766054,1.74867404556562,2.8071793013449,2.79332370262788,5.16478496585877,1.98532277207564,3.01428186306548|short_description=p3@Rin3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=217835 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=P59729,Q6PDX1,D3Z076 | |||
|association_with_transcript=0bp_to_ENSMUST00000056950,NM_177620,uc007oub.1,uc007ouc.2_5end | |||
|cluster_id=chr12:103521246..103521289,+ | |||
|description=CAGE_peak_3_at_Rin3_5end | |||
|id=chr12:103521246..103521289,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000466!1.62e-07!79;UBERON:0002107!5.50e-07!22;UBERON:0007499!5.50e-07!22;UBERON:0006925!5.50e-07!22;UBERON:0009497!5.50e-07!22;UBERON:0000015!5.50e-07!22;UBERON:0002423!5.50e-07!22;UBERON:0006235!5.50e-07!22;UBERON:0008835!5.50e-07!22;UBERON:0003894!5.50e-07!22;UBERON:0004161!5.50e-07!22;UBERON:0008836!5.50e-07!22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.99e-07,22;UBERON:0007499,3.99e-07,22;UBERON:0006925,3.99e-07,22;UBERON:0009497,3.99e-07,22;UBERON:0000015,3.99e-07,22;UBERON:0002423,3.99e-07,22;UBERON:0006235,3.99e-07,22;UBERON:0008835,3.99e-07,22;UBERON:0003894,3.99e-07,22;UBERON:0004161,3.99e-07,22;UBERON:0008836,3.99e-07,22;UBERON:0009854,7.52e-07,23;UBERON:0009856,7.52e-07,23;UBERON:0003914,9.17e-07,47 | |||
|phase1_expression=1.60148847104794,2.79180326111489,3.18499467572675,0,0,3.18970616632591,2.10251376535973,0.903863264091034,0.140788722151667,0.468129052643987,0.34243593645101,0.319088635981346,0.856003649656029,1.13646523144697,0,0.404950534779652,0,0.946386496074713,1.09691546884591,0,4.76242424845991,0.297872853602656,0,1.27993938234725,2.75291137280604,1.72269589234506,3.4460959692726,1.72376986148711,0.760093677825496,0.504060259519861,1.77384408524244,0,0,0,1.1554064790051,0.997407872150954,1.02084678131185,1.67412652294763,1.5626706890476,0.523523743973798,2.35292595212406,0.683045484958446,1.94204141212461,0.503587271902309,0,0,34.4252191513137,8.50298109883741,9.44650585758229,4.86074747685709,13.5786828976602,7.18762821824858,0.838913030288682,3.62681071005672,1.68046899571232,8.7468208252222,8.02293631828519,4.64104883049698,0.404632921719196,0,0.633831403506179,8.13226876965917,19.5644855144451,0,1.97773272513395,0.7104801149461,2.09720077362883,4.2264013585371,0.725827286159344,0.540023753326763,0.420649922702764,0.285650984403804,0.441737081903227,0.244981598429908,0.0958454710182364,0,0,1.0214987046815,0.307213066512487,0.131886287730194,0.274462930807229,0.52091337055676,0.558365998002762,2.8138130501584,1.37518422999129,1.47314292736834,0.996601765593721,0.745597783301202,1.06016670666458,1.20914496170857,8.11620568364698,6.0229671388697,5.439770669662,8.09554787456726,16.2444104361917,10.3046184032387,3.93244376368905,4.4311883870295,0.779358013808606,2.47337702157238,1.12674735821344,2.56652954828636,10.1922095882658,14.2213340630666,0.432982082022428,0.506719730950197,0,4.22480354960522,5.43769555659061,2.07818994690755,2.94925055502431,2.13125834818499,1.84492397804847,1.65794904607885,3.29248379979973,2.01066546127481,40.0455847729686,6.50697106139602,0,3.72063754879041,2.20841518460394,1.45462575940567,1.86391761218122,0.292780797011547,0.83778682725382,1.78819938646014,0.359445373517761,0.599902730993408,0.254140454146129,0.299581278809645,0.457500602818626,0.251308704225729,0,0.255715457330331,0.41557608911912,0.324482526135515,2.44414473240759,1.49288364732112,1.51633655060205,1.26265113531884,0.780722657776222,0.459804208866946,0.360124259610698,1.65775299619287,1.08858398642125,0.768682321709099,0.937017245597288,1.81092359517311,0.646703978798527,0.945530400839096,1.93546236580344,2.6303487891309,1.66828349535359,5.2237824978325,6.1734640922383,3.38358253591438,0,0.51469581422943,0.852490498186778,1.65700618028402,2.11073453982987,1.2604344302271,2.13070262026689,5.1158700254325,4.31947916084659,3.48800917125612,3.75582761959467,3.38619492864792,3.45575684818309,2.79084688934462,3.24275238183423,2.19299981137998,2.41505126820156,3.22095405024892,0.841159794256509,0.823236899034275,1.98251269790279,1.85115396664481,2.13288250535234,2.09013004674395,2.70621668776396,3.83198696784351,3.33567065767305,3.99473814836374,2.37264530772256,4.44687177754829,4.52403375840485,4.57599885694647,3.8992817423824,1.79763881730844,2.37751854862164,1.7922714592893,0.569003702859245,1.14248512609729,4.50830942692322,2.44381593414377,1.16371492300575,2.03393877681924,4.04713837595247,5.16635517928608,5.18095801876537,3.82531208157582,12.1545577105731,3.00321190288969,3.14494392181125,3.37293168577281,2.63718157805054,3.13530307678142,2.29163266603278,5.17853047411459,1.62135226775035,1.37280706594041,8.62609239164127,5.20997326735905,6.86482880852033,12.8815227753027,6.45830688678884,10.6137574699941,10.5309318394965,0.757965647081939,2.60743962307241,3.05541154395339,4.22442446919304,7.70528784232352,18.091316707337,14.0496226457615,8.98520321405289,8.858587585951,10.8429242687091,8.84861899464985,10.7064688756855,9.54683786637976,1.50791283939272,1.63171705145613,0,1.93155722413313,0.80275294993896,0.586058432961016,0,1.76729649043061,0.631016438832513,0,0.861693590931196,0.955875191810208,0.668396022247182,0.849229592366497,0.404810701674894,0,0.395287777946524,0.642642632843614,3.40656204499845,3.5613120733451,2.93196526836437,3.79431282836832,5.30980553359851,2.91336763385978,0.604647113929502,1.50884063804718,2.06711325016541,1.53717573971964,3.6179961043551,1.45413491791002,1.42598951353889,1.8962205476149,1.05418608574999,0,0.340439605753788,0.720244376125241,2.32845630808958,2.35770738534752,3.19212420556092,3.21063871683727,4.60737257685939,2.13125464380219,13.6109590676952,6.77862626764225,1.32317038832977,4.28704257647848,3.22928853391811,3.19658502119226,2.626191568069,2.79039529566604,4.37221254944776,0.927126510052548,1.19609616558497,3.714963623338,1.48155621895769,0.753473828018764,0.820165366326151,0.686334519619568,4.24946074984638,2.23922323717853,2.9021994498929,0,0.790839983952838,3.65975040828328,2.70013352054503,3.13632444021703,1.9652630737156,3.10187996685088,3.38879168473877,1.83229159388821,1.68499465279331,0,1.12738587736838,5.83114529571517,6.28742263736971,10.5003641705786,8.78286799648571,10.4752797804282,9.97536528488909,6.2498104725096,3.67007705489988,3.38217769156408,1.72818003754719,2.52808896502543,2.22997736819181,1.43795340030758,1.42912905275575,1.79026695667481,2.18549490259391,1.32214994471966,1.62458479892035,1.11063094942962,1.447929326445,1.31074040677893,2.14407337627455,1.6356013078856,1.16876902181569,2.26730383615211,9.76738194845885,12.5599399253266,12.2555769945777,1.9318959403219,11.2609485270709,2.38097111547445,1.07184189539533,1.00314420807073,0.564751842617067,0,0,0.343706364687375,0,0,0,0,0.453142408984205,1.03552062350364,0.93408612825759,1.99512436700516,0.682934423016537,2.43106717068294,2.51535795153579,3.8607136774503,2.22246727801615,3.29656091582231,3.20919209591815,3.28506375292937,4.81610669791456,3.77252682772152,2.80924522409647,3.58540853467268,4.13535376480416,3.81034953026459,4.1718357340148,2.31491064556446,4.53294490883637,3.23837624295674,4.80016953339582,3.72699192934609,2.14592570952589,3.92435324907287,3.57615645578256,3.72304274723377,3.10977553883713,3.41990624869196,2.8518863907631,7.2948495315506,3.6776855618494,4.13718825977367,3.27384834535751,2.47898945897546,3.47231899766054,1.74867404556562,2.8071793013449,2.79332370262788,5.16478496585877,1.98532277207564,3.01428186306548 | |||
|short_description=p3@Rin3 | |||
}} |
Latest revision as of 05:07, 26 September 2015
Short description: | p3@Rin3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rin3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000056950, NM_177620, uc007oub.1, uc007ouc.2_5end |
EntrezGene: | Rin3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
liver | 3.99e-07 | 22 |
epithelial sac | 3.99e-07 | 22 |
digestive gland | 3.99e-07 | 22 |
epithelium of foregut-midgut junction | 3.99e-07 | 22 |
anatomical boundary | 3.99e-07 | 22 |
hepatobiliary system | 3.99e-07 | 22 |
foregut-midgut junction | 3.99e-07 | 22 |
hepatic diverticulum | 3.99e-07 | 22 |
liver primordium | 3.99e-07 | 22 |
septum transversum | 3.99e-07 | 22 |
liver bud | 3.99e-07 | 22 |
digestive tract diverticulum | 7.52e-07 | 23 |
sac | 7.52e-07 | 23 |
epithelial tube | 9.17e-07 | 47 |