FFCP PHASE1:Hg19::chr7:109287317..109287331,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr7:109287317..109287331,- | |||
|description=CAGE_peak_at_chr7:109287317..109287331,- | |||
|id=chr7:109287317..109287331,- | |||
|ontology_enrichment_celltype=CL:0000066!2.57e-14!254;CL:0002150!1.83e-11!3;CL:0000861!1.83e-11!3;CL:0002541!3.08e-11!3;CL:0000076!1.13e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002541;7.36e-12;3!CL:1001319;8.17e-10;1!CL:1000600;8.17e-10;1!CL:0000319;1.83e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.59e-12,3;CL:1001319,8.91e-10,1;CL:1000600,8.91e-10,1;CL:0000319,2.08e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.46e-09;1!UBERON:0005795;5.58e-08;10 | |||
|ontology_enrichment_disease=DOID:305!5.44e-25!106;DOID:1749!3.29e-19!14;DOID:0050687!5.53e-19!143;DOID:162!2.76e-16!235;DOID:14566!9.81e-16!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.01e-29;14!DOID:3151;5.31e-10;1!DOID:3149;5.31e-10;1!DOID:3030;1.83e-09;1!DOID:299;3.25e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.01e-29,14;DOID:305,5.45e-20,106;DOID:0050687,4.80e-14,143;DOID:3151,5.31e-10,1;DOID:3149,5.31e-10,1;DOID:162,1.29e-09,235;DOID:3030,2.08e-09,1;DOID:14566,2.40e-09,239;DOID:299,3.25e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0003124!3.12e-12!7;UBERON:0000476!3.08e-11!3;UBERON:0000920!3.08e-11!3;UBERON:0001737!1.10e-08!9;UBERON:0003343!1.90e-08!4;UBERON:0004785!1.90e-08!4;UBERON:0005631!2.45e-08!14;UBERON:0000158!2.45e-08!14;UBERON:0003133!1.14e-07!48;UBERON:0003134!2.46e-07!37;UBERON:0000474!2.46e-07!37;UBERON:0000995!4.52e-07!21;UBERON:0003729!7.91e-07!5;UBERON:0005156!8.24e-07!59;UBERON:0000990!8.24e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;7.36e-12;3!UBERON:0000920;7.36e-12;3!UBERON:0000997;3.74e-10;1!UBERON:0005056;3.74e-10;1!UBERON:0004176;3.74e-10;1!UBERON:0004645;8.17e-10;1!UBERON:0001256;8.17e-10;1!UBERON:0001259;8.17e-10;1!UBERON:0003343;1.31e-09;4!UBERON:0004785;1.31e-09;4!UBERON:0005631;7.35e-08;10!UBERON:0000158;7.35e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.59e-12,3;UBERON:0003124,5.02e-11,7;UBERON:0000997,3.74e-10,1;UBERON:0005056,3.74e-10,1;UBERON:0004645,8.91e-10,1;UBERON:0001256,8.91e-10,1;UBERON:0001259,8.91e-10,1;UBERON:0003343,1.31e-09,4;UBERON:0004785,1.31e-09,4;UBERON:0005631,1.79e-09,14;UBERON:0000158,1.79e-09,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0.217879444092406,0,0.404493924480493,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.9941020300652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.1468810661288,0,0,0,0,1.90995587790152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0.108647371922008,3.50901275705111,0.641183153813036,2.66517388009317,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,3.32629852184552,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,138.169280354272,62.3343919115682,0,0,5.61186721476694,2.26576882967175,4.27000376676688,0,0,0,0,0,0,0,0.721429382263803,0,11.7887669653457,0,0,0,0,0,0,0.135904206073614,0.418411385249333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,48.6380297018936,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,101.496259985459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,2.21195617878347,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,81.1631696632454,28.6148613693819,0,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1531308121143,0,0,0,0,0,0,0,0,2.24217730651031,0,0.215927591218621,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,12.7184618122371,4.77769469488717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.498775702396,0,0,0,0,0,0,0,0,0,0,0,0,0.378499274505237,0,0.126698501011437,0.407955318967927,0,0.551369397209069,0,0,0,0,0,0,0,0,0,1.6819779387092,0,0,0,0,0,0,0,12.3732968288681,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:109287317..109287331,- | |||
}} |
Latest revision as of 05:00, 31 July 2015
Short description: | p@chr7:109287317..109287331, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:109287317..109287331, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.59e-12 | 3 |
bladder cell | 8.91e-10 | 1 |
lower urinary tract cell | 8.91e-10 | 1 |
mucus secreting cell | 2.08e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.59e-12 | 3 |
chorion | 5.02e-11 | 7 |
mammalian vulva | 3.74e-10 | 1 |
external female genitalia | 3.74e-10 | 1 |
urinary bladder urothelium | 8.91e-10 | 1 |
wall of urinary bladder | 8.91e-10 | 1 |
mucosa of urinary bladder | 8.91e-10 | 1 |
mucosa of oral region | 1.31e-09 | 4 |
respiratory system mucosa | 1.31e-09 | 4 |
extraembryonic membrane | 1.79e-09 | 14 |
membranous layer | 1.79e-09 | 14 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.01e-29 | 14 |
carcinoma | 5.45e-20 | 106 |
cell type cancer | 4.80e-14 | 143 |
skin squamous cell carcinoma | 5.31e-10 | 1 |
keratoacanthoma | 5.31e-10 | 1 |
cancer | 1.29e-09 | 235 |
mucinous adenocarcinoma | 2.08e-09 | 1 |
disease of cellular proliferation | 2.40e-09 | 239 |
adenocarcinoma | 3.25e-08 | 25 |