CL:0000810: Difference between revisions
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|name=CD4-positive, alpha-beta thymocyte | |name=CD4-positive, alpha-beta thymocyte | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002370 | |part_of=UBERON:0002370 | ||
Latest revision as of 16:37, 12 September 2014
| Name: | CD4-positive, alpha-beta thymocyte |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] |
| Synonyms: |
"CD4-positive, alpha-beta immature T lymphocyte" EXACT [] "CD4-positive, alpha-beta immature T-cell" EXACT [] "CD4-positive, alpha-beta immature T-lymphocyte" EXACT [] "SP CD4 cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000790(immature alpha-beta T cell),CL:0000893(thymocyte) |
|---|---|
| develops_from: | CL:0000809(double-positive, alpha-beta thymocyte) |
| part_of: | UBERON:0002370(thymus) |
Children
| is a: | CL:0002432 (CD24-positive, CD4 single-positive thymocyte),CL:0002433 (CD69-positive, CD4-positive single-positive thymocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000810 (CD4-positive, alpha-beta thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_e6f85c36541b061668c3fdcbabb284b0 | p4@APOBEC4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_e6f85c36541b061668c3fdcbabb284b0 | p4@APOBEC4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_e6f85c36541b061668c3fdcbabb284b0 | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_e6f85c36541b061668c3fdcbabb284b0 | p@chr2:162762361..162762364, + |
| 1.36e-86 | FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_b687a46575b2ca315637b12f90c23f1f | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_b687a46575b2ca315637b12f90c23f1f | p@chr13:30878406..30878419, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_b687a46575b2ca315637b12f90c23f1f | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_b687a46575b2ca315637b12f90c23f1f | p@chr13:30878406..30878419, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_b9858a2ee05c2761e2ed04cfd7d2109b | p@chr16:52032670..52032685, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_b9858a2ee05c2761e2ed04cfd7d2109b | p@chr16:52032670..52032685, + |
| 2.41e-74 | FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_f4fef961de26f46da0968fa1a4f72704 | p1@ENSMUST00000103701 |
| 2.41e-74 | FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_f4fef961de26f46da0968fa1a4f72704 | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_f4fef961de26f46da0968fa1a4f72704 | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_f4fef961de26f46da0968fa1a4f72704 | p1@ENSMUST00000103701 |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_ebc4759825edf021fc9767ce9ce29d68 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_ebc4759825edf021fc9767ce9ce29d68 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_ebc4759825edf021fc9767ce9ce29d68 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_ebc4759825edf021fc9767ce9ce29d68 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_ebc4759825edf021fc9767ce9ce29d68 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_ebc4759825edf021fc9767ce9ce29d68 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_ebc4759825edf021fc9767ce9ce29d68 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_ebc4759825edf021fc9767ce9ce29d68 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_ebc4759825edf021fc9767ce9ce29d68 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_ebc4759825edf021fc9767ce9ce29d68 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_ebc4759825edf021fc9767ce9ce29d68 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_ebc4759825edf021fc9767ce9ce29d68 | p@chr14:122362270..122362291, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_cd066d58b9c9ab7e16d18182b578b7e8 | p17@ANXA1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_cd066d58b9c9ab7e16d18182b578b7e8 | p17@ANXA1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_e71795bfb8b50efa10ae5e7e132286bb | p@chr2:204816181..204816219, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_e71795bfb8b50efa10ae5e7e132286bb | p@chr20:37493438..37493456, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_e71795bfb8b50efa10ae5e7e132286bb | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_e71795bfb8b50efa10ae5e7e132286bb | p@chr2:204816181..204816219, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_e71795bfb8b50efa10ae5e7e132286bb | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_e71795bfb8b50efa10ae5e7e132286bb | p@chr20:37493438..37493456, - |
| 1.05e-65 | FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_7c191f68dc067e037a8e595809ba496e | p@chr14:53242248..53242261, + |
| 1.05e-65 | FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_7c191f68dc067e037a8e595809ba496e | p@chr14:53242248..53242261, + |
| 1.74e-65 | FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_7c9eaf443995582b946c00b9e9d6befb | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 1.74e-65 | FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_7c9eaf443995582b946c00b9e9d6befb | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 2.25e-65 | FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_2091faff8618b37a4e416079fc4004fd | p@chr5:123465978..123465989, - |
| 2.25e-65 | FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_2091faff8618b37a4e416079fc4004fd | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_2091faff8618b37a4e416079fc4004fd | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_2091faff8618b37a4e416079fc4004fd | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_2091faff8618b37a4e416079fc4004fd | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_2091faff8618b37a4e416079fc4004fd | p@chr5:123465978..123465989, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_9f0c637dd3167bc1ed9abb06caa499f8 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_9f0c637dd3167bc1ed9abb06caa499f8 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_9f0c637dd3167bc1ed9abb06caa499f8 | p@chr6:41504409..41504422, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_9f0c637dd3167bc1ed9abb06caa499f8 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_9f0c637dd3167bc1ed9abb06caa499f8 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_9f0c637dd3167bc1ed9abb06caa499f8 | p@chr6:41504409..41504422, - |
| 3.74e-65 | FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_684b283a1597519120bf1021f73e9ae1 | p@chr4:32328217..32328228, - |
| 3.74e-65 | FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_684b283a1597519120bf1021f73e9ae1 | p@chr4:32328217..32328228, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_007c62f50ee2c9535bb8f68128692734 | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_007c62f50ee2c9535bb8f68128692734 | p@chr5:123465955..123465966, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_007c62f50ee2c9535bb8f68128692734 | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_007c62f50ee2c9535bb8f68128692734 | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_007c62f50ee2c9535bb8f68128692734 | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_007c62f50ee2c9535bb8f68128692734 | p@chr5:123465955..123465966, - |
| 1.0e-60 | FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_57abd1cac5085f6b5ab14fbce739e805 | p@chr2:11097490..11097500, + |
| 1.0e-60 | FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_57abd1cac5085f6b5ab14fbce739e805 | p@chr2:11097490..11097500, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_e1f2c4ccaef2dde9467b22c45064a9a6 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_e1f2c4ccaef2dde9467b22c45064a9a6 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_e1f2c4ccaef2dde9467b22c45064a9a6 | p@chr12:70398221..70398232, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_e1f2c4ccaef2dde9467b22c45064a9a6 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_e1f2c4ccaef2dde9467b22c45064a9a6 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_e1f2c4ccaef2dde9467b22c45064a9a6 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_e1f2c4ccaef2dde9467b22c45064a9a6 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_e1f2c4ccaef2dde9467b22c45064a9a6 | p@chr12:70398221..70398232, - |
| 1.77e-60 | FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_bd41a7c3ebe1039ac23b7c2beed31bbe | p1@ENSMUST00000103582 |
| 1.77e-60 | FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_bd41a7c3ebe1039ac23b7c2beed31bbe | p1@ENSMUST00000103582 |
| 2.34e-60 | FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_3f67c5b30f1ef8557e7f914513918cc3 | p@chr2:73290853..73290866, + |
| 2.34e-60 | FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_3f67c5b30f1ef8557e7f914513918cc3 | p@chr2:73290853..73290866, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_ae3634702a12530638fda3aca89a5683 | p8@Folr4 |
| 4.1e-60 | FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_ae3634702a12530638fda3aca89a5683 | p8@Folr4 |
| 4.1e-60 | FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_ae3634702a12530638fda3aca89a5683 | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_ae3634702a12530638fda3aca89a5683 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_ae3634702a12530638fda3aca89a5683 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_ae3634702a12530638fda3aca89a5683 | p@chr1:138476217..138476228, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_dde3a39abc14d92ecacc62947495bc64 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_dde3a39abc14d92ecacc62947495bc64 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_dde3a39abc14d92ecacc62947495bc64 | p@chr11:87558695..87558707, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_dde3a39abc14d92ecacc62947495bc64 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_dde3a39abc14d92ecacc62947495bc64 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_dde3a39abc14d92ecacc62947495bc64 | p@chr11:87558695..87558707, + |
| 1.09e-58 | FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_ca73dd9acd0b91d891900b5a87aaa80c | p@chr4:32339235..32339263, + |
| 1.09e-58 | FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_ca73dd9acd0b91d891900b5a87aaa80c | p@chr4:32339235..32339263, + |
| 1.71e-58 | FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_e5765c6249e32bf5c9e390c5b32d6a54 | p5@Cd6 |
| 1.71e-58 | FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_e5765c6249e32bf5c9e390c5b32d6a54 | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_e5765c6249e32bf5c9e390c5b32d6a54 | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_e5765c6249e32bf5c9e390c5b32d6a54 | p5@Cd6 |
| 2.15e-58 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_504285c42e9fea16c1ca8b73d243196f | p1@ENSMUST00000103733 |
| 2.15e-58 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_504285c42e9fea16c1ca8b73d243196f | p1@ENSMUST00000103733 |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_c562dd4d4e7461a83945976691041d64 | p3@Tnfrsf25 |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_c562dd4d4e7461a83945976691041d64 | p3@Tnfrsf25 |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_c562dd4d4e7461a83945976691041d64 | p@chr4:32339511..32339518, + |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_c562dd4d4e7461a83945976691041d64 | p@chr4:32339511..32339518, + |
| 3.38e-58 | FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_d226a1fbdb8c8bdb90deb2a759dfa368 | p@chr6:48656532..48656548, + |
| 3.38e-58 | FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_d226a1fbdb8c8bdb90deb2a759dfa368 | p@chr6:48656532..48656548, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr7:31208431..31208442,+#_89f2c2991418f157ae597eeaedbfead7 | p6@Nfkbid |
| 3.91e-58 | FFCP PHASE2:Mm9::chr1:140038899..140038910,-#_89f2c2991418f157ae597eeaedbfead7 | p@chr1:140038899..140038910, - |
