UBERON:0000058: Difference between revisions
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|located_in= | |located_in= | ||
|name=duct | |name=duct | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:04, 12 September 2014
| Name: | duct | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical duct" EXACT [] "exocrine duct" RELATED [] "exocrine gland duct" RELATED [] | ||
| Comments: | TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000025(tube) |
|---|
Children
| is a: | UBERON:0002173 (alveolar duct),UBERON:0003928 (digestive system duct),UBERON:0005904 (duct of male reproductive system),UBERON:0006553 (renal duct),UBERON:0014716 (interlobular duct),FF:10489-107B3 (),FF:10515-107E2 () |
|---|---|
| part of: | CL:0000068 (duct epithelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10489-107B3
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10515-107E2
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
... further results Mouse (Mus musculus)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10489-107B3
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10515-107E2
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000058 (duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.28e-50 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr14:63585048..63585062, - |
| 5.28e-50 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr14:63585048..63585062, - |
| 5.28e-50 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr14:63585020..63585025, - |
| 5.28e-50 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr14:63585020..63585025, - |
| 5.28e-50 | FFCP PHASE2:Mm9::chr5:145240607..145240622,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr5:145240607..145240622, - |
| 5.28e-50 | FFCP PHASE1:Mm9::chr5:145240607..145240622,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr5:145240607..145240622, - |
| 6.59e-38 | FFCP PHASE1:Mm9::chrX:154140764..154140773,+#_f5c99666d3583946692206a046ceb4bb | p@chrX:154140764..154140773, + |
| 6.59e-38 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_f5c99666d3583946692206a046ceb4bb | p@chr10:127470655..127470664, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chrX:154140764..154140773,+#_f5c99666d3583946692206a046ceb4bb | p@chrX:154140764..154140773, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_f5c99666d3583946692206a046ceb4bb | p4@Defb42 |
| 6.59e-38 | FFCP PHASE2:Mm9::chr6:30620232..30620242,+#_f5c99666d3583946692206a046ceb4bb | p@chr6:30620232..30620242, + |
| 6.59e-38 | FFCP PHASE1:Mm9::chr6:30620232..30620242,+#_f5c99666d3583946692206a046ceb4bb | p@chr6:30620232..30620242, + |
| 6.59e-38 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_f5c99666d3583946692206a046ceb4bb | p4@Spink12 |
| 6.59e-38 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_f5c99666d3583946692206a046ceb4bb | p4@Spink12 |
| 6.59e-38 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_f5c99666d3583946692206a046ceb4bb | p@chr14:63585028..63585037, - |
| 6.59e-38 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_f5c99666d3583946692206a046ceb4bb | p@chr10:127470655..127470664, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_f5c99666d3583946692206a046ceb4bb | p@chr14:63585028..63585037, - |
| 6.59e-38 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_f5c99666d3583946692206a046ceb4bb | p4@Defb42 |
| 6.59e-38 | FFCP PHASE2:Mm9::chr6:30620140..30620158,+#_f5c99666d3583946692206a046ceb4bb | p@chr6:30620140..30620158, + |
| 6.59e-38 | FFCP PHASE1:Mm9::chr6:30620140..30620158,+#_f5c99666d3583946692206a046ceb4bb | p@chr6:30620140..30620158, + |
| 9.08e-34 | FFCP PHASE2:Hg19::chr17:46686583..46686590,-#_5b31fd97b3579057a9c8d5368c443c52 | p@chr17:46686583..46686590, - |
| 9.08e-34 | FFCP PHASE1:Hg19::chr17:46686583..46686590,-#_5b31fd97b3579057a9c8d5368c443c52 | p@chr17:46686583..46686590, - |
| 9.25e-34 | FFCP PHASE1:Mm9::chr2:9811213..9811223,-#_f28772590192ca5ecb06ddd535dcdc77 | p1@9230102O04Rik |
| 9.25e-34 | FFCP PHASE2:Mm9::chr2:9811213..9811223,-#_f28772590192ca5ecb06ddd535dcdc77 | p1@9230102O04Rik |
| 4.52e-32 | FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr15:25165150..25165161, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr15:25165150..25165161, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125617636..125617646, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chr14:105935020..105935028, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:69951723..69951737, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chr14:105935020..105935028, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_bb9afff89598642e0be044d9f1eac2f9 | p3@PATE2 |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_bb9afff89598642e0be044d9f1eac2f9 | p2@PATE1 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618739..125618756, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_bb9afff89598642e0be044d9f1eac2f9 | p2@EDDM3A |
| 4.52e-32 | FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chrX:112044378..112044412, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618495..125618517, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_bb9afff89598642e0be044d9f1eac2f9 | p2@EDDM3A |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125617607..125617617, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr3:140961228..140961237, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:69951723..69951737, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_bb9afff89598642e0be044d9f1eac2f9 | p2@PATE2 |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618661..125618677, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125617636..125617646, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_bb9afff89598642e0be044d9f1eac2f9 | p3@PATE2 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_bb9afff89598642e0be044d9f1eac2f9 | p2@PATE1 |
| 4.52e-32 | FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chrX:112044378..112044412, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_bb9afff89598642e0be044d9f1eac2f9 | p3@EDDM3A |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:69950851..69950887, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618739..125618756, - |
| 4.52e-32 | FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_bb9afff89598642e0be044d9f1eac2f9 | p1@LCN9 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_bb9afff89598642e0be044d9f1eac2f9 | p3@EDDM3A |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:69950851..69950887, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618495..125618517, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125617607..125617617, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr3:140961228..140961237, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_bb9afff89598642e0be044d9f1eac2f9 | p2@PATE2 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618661..125618677, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_bb9afff89598642e0be044d9f1eac2f9 | p1@LCN9 |
| 8.6e-32 | FFCP PHASE1:Mm9::chrX:156828404..156828426,+#_b095e5966b8ce23072f8e1d2475d5b1b | p3@Gpr64 |
| 8.6e-32 | FFCP PHASE2:Mm9::chrX:156828404..156828426,+#_b095e5966b8ce23072f8e1d2475d5b1b | p3@Gpr64 |
| 5.74e-29 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_ffa528b688cce2c48f8946992ee53a31 | p@chr2:152388713..152388729, + |
| 5.74e-29 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_ffa528b688cce2c48f8946992ee53a31 | p@chr2:152388713..152388729, + |
| 8.27e-29 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_19638a4c2fb752ba910b786007fab5a4 | p@chr11:76361451..76361499, + |
| 8.27e-29 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_19638a4c2fb752ba910b786007fab5a4 | p2@D730048I06Rik, p2@Gm17727 |
| 8.27e-29 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_19638a4c2fb752ba910b786007fab5a4 | p4@Cyb561 |
| 8.27e-29 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_19638a4c2fb752ba910b786007fab5a4 | p@chr11:76361451..76361499, + |
| 8.27e-29 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_19638a4c2fb752ba910b786007fab5a4 | p2@D730048I06Rik, p2@Gm17727 |
| 8.27e-29 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_19638a4c2fb752ba910b786007fab5a4 | p4@Cyb561 |
| 1.03e-28 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr9:26611246..26611253, - |
| 1.03e-28 | FFCP PHASE2:Mm9::chr5:145240547..145240560,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr5:145240547..145240560, - |
| 1.03e-28 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr14:63627556..63627564, - |
| 1.03e-28 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr9:26732045..26732085, + |
| 1.03e-28 | FFCP PHASE1:Mm9::chr5:145240547..145240560,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr5:145240547..145240560, - |
| 1.03e-28 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr9:26611246..26611253, - |
| 1.03e-28 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_da7cccfd61b5668e92bd70b5f5d16bd8 | p2@Eddm3b |
| 1.03e-28 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr9:26732045..26732085, + |
| 1.03e-28 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_da7cccfd61b5668e92bd70b5f5d16bd8 | p2@Eddm3b |
| 1.03e-28 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr14:63627556..63627564, - |
| 1.28e-28 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_4c50a4f9807601d9e96ae5eac100e264 | p@chr2:69981027..69981032, + |
| 1.28e-28 | FFCP PHASE1:Mm9::chr15:27418016..27418056,+#_4c50a4f9807601d9e96ae5eac100e264 | p@chr15:27418016..27418056, + |
| 1.28e-28 | FFCP PHASE2:Mm9::chr15:27418016..27418056,+#_4c50a4f9807601d9e96ae5eac100e264 | p@chr15:27418016..27418056, + |
| 1.28e-28 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_4c50a4f9807601d9e96ae5eac100e264 | p@chr2:69981027..69981032, + |
| 1.58e-28 | FFCP PHASE1:Mm9::chr12:86818215..86818223,-#_22f9d17fe2fff49f06f4837517be5929 | p@chr12:86818215..86818223, - |
| 1.58e-28 | FFCP PHASE2:Mm9::chr12:86818215..86818223,-#_22f9d17fe2fff49f06f4837517be5929 | p@chr12:86818215..86818223, - |
| 2.49e-28 | FFCP PHASE1:Hg19::chr17:46679202..46679220,+#_ed26049e635601cbf671b4ea3b65ae99 | p2@ENST00000491264 |
| 2.49e-28 | FFCP PHASE2:Hg19::chr17:46679202..46679220,+#_ed26049e635601cbf671b4ea3b65ae99 | p2@ENST00000491264 |
| 8.13e-27 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_d14d6ad61e256f24cc48a3919c127dbd | p@chr17:171147..171161, + |
| 8.13e-27 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_d14d6ad61e256f24cc48a3919c127dbd | p@chr17:171147..171161, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr14:63611201..63611210,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr14:63611201..63611210, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr2:75320183..75320189, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr2:164480465..164480471,-#_b77a92ef88490d7e37654a5e57bc0927 | p2@Wfdc9 |
| 7.57e-26 | FFCP PHASE1:Mm9::chr1:89597834..89597840,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr1:89597834..89597840, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr5:31379477..31379481,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr5:31379477..31379481, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr13:21383212..21383225,-#_b77a92ef88490d7e37654a5e57bc0927 | p@chr13:21383212..21383225, - |
| 7.57e-26 | FFCP PHASE2:Mm9::chr8:22061771..22061777,-#_b77a92ef88490d7e37654a5e57bc0927 | p3@Gm6040, p3@LOC100503992 |
| 7.57e-26 | FFCP PHASE1:Mm9::chr5:31377177..31377184,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr5:31377177..31377184, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr1:16651649..16651655, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr2:148676859..148676866,-#_b77a92ef88490d7e37654a5e57bc0927 | p5@9230104L09Rik |
| 7.57e-26 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_b77a92ef88490d7e37654a5e57bc0927 | p2@Tmprss3 |
| 7.57e-26 | FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr16:25752228..25752237, + |
