UBERON:0000087: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=inner cell mass | |name=inner cell mass | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
Latest revision as of 17:06, 12 September 2014
| Name: | inner cell mass | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed 'blastocyst cavity', as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast." [Wikipedia:Inner_cell_mass] | ||
| Xrefs: |
| ||
| Synonyms: |
"embryoblast" RELATED [] "embryoblastus; massa cellularis interna; pluriblastus senior" RELATED LATIN [Wikipedia:Inner_cell_mass] "pluriblast" RELATED [] | ||
| Subset: | early_development |
200px-Blastocyst_English.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002050(embryonic structure) |
|---|---|
| develops_from: | UBERON:0000085(morula),UBERON:0000358(blastocyst) |
| part_of: | UBERON:0000922(embryo) |
Children
| develops from: | UBERON:0000091 (bilaminar disc),UBERON:0008780 (inner cell mass derived epiblast) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000087 (inner cell mass), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.79e-79 | FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_1dca9825b89a60e2fa381a048ee4971f | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_1dca9825b89a60e2fa381a048ee4971f | p@chr7:135931480..135931486, + |
| 5.79e-79 | FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_1dca9825b89a60e2fa381a048ee4971f | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_1dca9825b89a60e2fa381a048ee4971f | p@chr7:135931480..135931486, + |
| 2.16e-63 | FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_e5a4f94565027041fa0b09de30c72b79 | p8@RAB7L1 |
| 2.16e-63 | FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_e5a4f94565027041fa0b09de30c72b79 | p8@RAB7L1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167951900..167951907,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr4:167951900..167951907, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:189266272..189266296,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:189266272..189266296, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:45063061..45063082,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr2:45063061..45063082, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:149464325..149464336, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216610..228216617,+#_d2d0999b38e3591402cb47ae812aa340 | p18@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:146746588..146746604,+#_d2d0999b38e3591402cb47ae812aa340 | p5@CHD1L |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:157301317..157301362,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:157301317..157301362, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:36393818..36393829,-#_d2d0999b38e3591402cb47ae812aa340 | p2@ENST00000504344 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:42682291..42682301,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr19:42682291..42682301, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:106397647..106397655,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr7:106397647..106397655, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:491208..491217,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:491208..491217, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:20105576..20105585,+#_d2d0999b38e3591402cb47ae812aa340 | p11@RANBP1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:45926401..45926410, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:38216859..38216889,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr8:38216859..38216889, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106363986..106363994,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr7:106363986..106363994, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr20:22771722..22771733, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:15633244..15633249,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr2:15633244..15633249, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:142250880..142250889,-#_d2d0999b38e3591402cb47ae812aa340 | p4@AF430683, p4@AF430684, p4@AF430685 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr4:167938808..167938815, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr2:148282641..148282654, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76957775..76957781,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr14:76957775..76957781, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr1:212870782..212870788, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:77198556..77198565,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr12:77198556..77198565, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr20:38442102..38442111,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr20:38442102..38442111, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76957775..76957781,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr14:76957775..76957781, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr7:135735084..135735112, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18180126..18180130,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr21:18180126..18180130, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr17:40021018..40021028,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr17:40021018..40021028, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:53245239..53245255,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr2:53245239..53245255, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74997054..74997058,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr9:74997054..74997058, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:180050773..180050786,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:180050773..180050786, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18170731..18170736,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr21:18170731..18170736, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr11:128154946..128154955,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr11:128154946..128154955, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216642..228216661,+#_d2d0999b38e3591402cb47ae812aa340 | p11@MFF |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:37484406..37484413,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr22:37484406..37484413, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74986248..74986275,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr9:74986248..74986275, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167983163..167983209,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr4:167983163..167983209, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:49488921..49488932,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr19:49488921..49488932, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:120924761..120924770,-#_d2d0999b38e3591402cb47ae812aa340 | p10@SFXN4 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:111319059..111319101,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:111319059..111319101, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:207617923..207617929,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr1:207617923..207617929, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr17:1985278..1985290,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr17:1985278..1985290, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr7:17543537..17543548, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:2930946..2930963,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr2:2930946..2930963, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:119281371..119281382, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr12:129054695..129054717, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:40074306..40074328,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr19:40074306..40074328, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:120921395..120921406,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr10:120921395..120921406, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:87324164..87324175, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:149490934..149490939, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:42362820..42362827,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:42362820..42362827, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167932279..167932291,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr4:167932279..167932291, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74996801..74996811,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr9:74996801..74996811, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:31996512..31996530,-#_d2d0999b38e3591402cb47ae812aa340 | p5@ENST00000433770 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr7:106363860..106363870, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:45926401..45926410,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:45926401..45926410, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr22:37484379..37484392,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr22:37484379..37484392, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr2:148293141..148293150, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:102945487..102945492,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr7:102945487..102945492, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:75655787..75655802,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:75655787..75655802, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76017386..76017395,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr14:76017386..76017395, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:119279036..119279047,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:119279036..119279047, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18180062..18180079,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr21:18180062..18180079, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr5:28145264..28145272, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_d2d0999b38e3591402cb47ae812aa340 | p@chrX:109653507..109653518, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:117957610..117957619,-#_d2d0999b38e3591402cb47ae812aa340 | p3@LOC100526771 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:195306434..195306439,-#_d2d0999b38e3591402cb47ae812aa340 | p10@APOD |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:53511711..53511720,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr19:53511711..53511720, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76017386..76017395,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr14:76017386..76017395, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr7:135705366..135705371, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18179708..18179733,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr21:18179708..18179733, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:11264766..11264775,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr2:11264766..11264775, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:49488905..49488920,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr19:49488905..49488920, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74995216..74995247,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr9:74995216..74995247, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr12:129054695..129054717,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr12:129054695..129054717, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_d2d0999b38e3591402cb47ae812aa340 | p14@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:138023078..138023089,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:138023078..138023089, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167957459..167957470,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr4:167957459..167957470, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:43934923..43934932,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr21:43934923..43934932, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:77713534..77713543,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr5:77713534..77713543, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:94933452..94933457,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr9:94933452..94933457, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216642..228216661,+#_d2d0999b38e3591402cb47ae812aa340 | p11@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:38442102..38442111,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr20:38442102..38442111, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:10129292..10129306,+#_d2d0999b38e3591402cb47ae812aa340 | p@chrX:10129292..10129306, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:150322254..150322291,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:150322254..150322291, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr8:59970765..59970787, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:111805635..111805642,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr10:111805635..111805642, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106397597..106397610,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr7:106397597..106397610, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:31150998..31151005,-#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:31150998..31151005, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:153038353..153038371,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr3:153038353..153038371, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:135486487..135486491,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr6:135486487..135486491, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:146717844..146717861,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr5:146717844..146717861, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:74682916..74682923,+#_d2d0999b38e3591402cb47ae812aa340 | p@chr2:74682916..74682923, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:15651894..15651904,-#_d2d0999b38e3591402cb47ae812aa340 | p4@NBAS |
