Personal tools

UBERON:0002084: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=heart left ventricle
|name=heart left ventricle
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:25, 12 September 2014

Name:heart left ventricle
Namespace:FANTOM
Definition:"Left cardiac chamber which is continuous with the aorta.[FMA]" [FMA:FMA, Wikipedia:Left_ventricle]
Xrefs:
links:

BTO:0001629
EHDAA2:0002178
EMAPA:17337
FMA:7101
galen:LeftVentricle
[1]
[ 200px-Diagram_of_the_human_heart_%28cropped%29.svg.png 200px-Diagram_of_the_human_heart_%28cropped%29.svg.png]
MA:0000092
ncithesaurus:Left_Ventricle
OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw
OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA
SCTID:244385005

VHOG:0000718
Synonyms: "cardiac left ventricle" EXACT []
"left cardiac ventricle" EXACT []
"left ventricle" EXACT [FMA:7101]
"left ventricle of heart" EXACT []
"ventriculus sinister cordis" RELATED LATIN [Wikipedia:Left_ventricle]
Alt_id: UBERON:FMA_7101-MA_0000092
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002082(cardiac ventricle),UBERON:0015212(lateral structure)
develops_from:UBERON:0004140(primary heart field)



Children

derives from:FF:0010078 (human left ventricle - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002084 (heart left ventricle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr3:37061825..37061832,+#_8d1915632881d3341e75e8695cf61614p@chr3:37061825..37061832, +
9.37e-99FFCP PHASE1:Hg19::chr3:37061825..37061832,+#_8d1915632881d3341e75e8695cf61614p@chr3:37061825..37061832, +
2.55e-98FFCP PHASE2:Hg19::chr16:46766402..46766412,-#_3d42bd6f159a3b610ec50591bca78bddp@chr16:46766402..46766412, -
2.55e-98FFCP PHASE2:Hg19::chr10:35032687..35032696,-#_3d42bd6f159a3b610ec50591bca78bddp@chr10:35032687..35032696, -
2.55e-98FFCP PHASE2:Hg19::chr8:124033810..124033819,-#_3d42bd6f159a3b610ec50591bca78bddp@chr8:124033810..124033819, -
2.55e-98FFCP PHASE1:Hg19::chr8:124033810..124033819,-#_3d42bd6f159a3b610ec50591bca78bddp@chr8:124033810..124033819, -
2.55e-98FFCP PHASE1:Hg19::chr10:35032687..35032696,-#_3d42bd6f159a3b610ec50591bca78bddp@chr10:35032687..35032696, -
2.55e-98FFCP PHASE1:Hg19::chr16:46766402..46766412,-#_3d42bd6f159a3b610ec50591bca78bddp@chr16:46766402..46766412, -
2.55e-98FFCP PHASE2:Hg19::chr4:53417811..53417814,-#_3d42bd6f159a3b610ec50591bca78bddp@chr4:53417811..53417814, -
2.55e-98FFCP PHASE1:Hg19::chr4:53417811..53417814,-#_3d42bd6f159a3b610ec50591bca78bddp@chr4:53417811..53417814, -
1.23e-66FFCP PHASE2:Hg19::chr3:46902281..46902288,-#_913d1a54c4da38bf70a381d2377b5518p@chr3:46902281..46902288, -
1.23e-66FFCP PHASE1:Hg19::chr5:79030927..79030935,+#_913d1a54c4da38bf70a381d2377b5518p49@CMYA5
1.23e-66FFCP PHASE1:Hg19::chr3:46902281..46902288,-#_913d1a54c4da38bf70a381d2377b5518p@chr3:46902281..46902288, -
1.23e-66FFCP PHASE2:Hg19::chr5:79026919..79026926,+#_913d1a54c4da38bf70a381d2377b5518p@chr5:79026919..79026926, +
1.23e-66FFCP PHASE2:Hg19::chr5:79030927..79030935,+#_913d1a54c4da38bf70a381d2377b5518p49@CMYA5
1.23e-66FFCP PHASE1:Hg19::chr5:79026919..79026926,+#_913d1a54c4da38bf70a381d2377b5518p@chr5:79026919..79026926, +
2.39e-66FFCP PHASE1:Hg19::chr1:202431836..202431849,+#_15634e95282be5f9cb2960fdaab79549p18@PPP1R12B
2.39e-66FFCP PHASE1:Hg19::chr22:18403223..18403228,-#_15634e95282be5f9cb2960fdaab79549p@chr22:18403223..18403228, -
2.39e-66FFCP PHASE2:Hg19::chr16:46737348..46737351,-#_15634e95282be5f9cb2960fdaab79549p@chr16:46737348..46737351, -
2.39e-66FFCP PHASE2:Hg19::chr12:660023..660044,+#_15634e95282be5f9cb2960fdaab79549p@chr12:660023..660044, +
2.39e-66FFCP PHASE1:Hg19::chr1:164881611..164881641,-#_15634e95282be5f9cb2960fdaab79549p@chr1:164881611..164881641, -
2.39e-66FFCP PHASE2:Hg19::chr1:202431911..202431922,+#_15634e95282be5f9cb2960fdaab79549p12@PPP1R12B
2.39e-66FFCP PHASE1:Hg19::chr7:35294320..35294351,+#_15634e95282be5f9cb2960fdaab79549p@chr7:35294320..35294351, +
2.39e-66FFCP PHASE2:Hg19::chr18:6255319..6255336,-#_15634e95282be5f9cb2960fdaab79549p@chr18:6255319..6255336, -
2.39e-66FFCP PHASE2:Hg19::chr7:35294320..35294351,+#_15634e95282be5f9cb2960fdaab79549p@chr7:35294320..35294351, +
2.39e-66FFCP PHASE2:Hg19::chr22:18403223..18403228,-#_15634e95282be5f9cb2960fdaab79549p@chr22:18403223..18403228, -
2.39e-66FFCP PHASE2:Hg19::chr1:164881611..164881641,-#_15634e95282be5f9cb2960fdaab79549p@chr1:164881611..164881641, -
2.39e-66FFCP PHASE2:Hg19::chr1:202431836..202431849,+#_15634e95282be5f9cb2960fdaab79549p18@PPP1R12B
2.39e-66FFCP PHASE1:Hg19::chr16:46737348..46737351,-#_15634e95282be5f9cb2960fdaab79549p@chr16:46737348..46737351, -
2.39e-66FFCP PHASE1:Hg19::chr18:6255319..6255336,-#_15634e95282be5f9cb2960fdaab79549p@chr18:6255319..6255336, -
2.39e-66FFCP PHASE1:Hg19::chr1:202431911..202431922,+#_15634e95282be5f9cb2960fdaab79549p12@PPP1R12B
2.39e-66FFCP PHASE1:Hg19::chr12:660023..660044,+#_15634e95282be5f9cb2960fdaab79549p@chr12:660023..660044, +
4.66e-66FFCP PHASE1:Hg19::chr1:1154360..1154365,-#_0ef5c471077673d28bbfac349ece0944p@chr1:1154360..1154365, -
4.66e-66FFCP PHASE1:Hg19::chr7:31933122..31933152,-#_0ef5c471077673d28bbfac349ece0944p@chr7:31933122..31933152, -
4.66e-66FFCP PHASE1:Hg19::chr20:20069786..20069797,-#_0ef5c471077673d28bbfac349ece0944p@chr20:20069786..20069797, -
4.66e-66FFCP PHASE2:Hg19::chr2:179581909..179581915,-#_0ef5c471077673d28bbfac349ece0944p@chr2:179581909..179581915, -
4.66e-66FFCP PHASE2:Hg19::chr2:170374754..170374760,+#_0ef5c471077673d28bbfac349ece0944p@chr2:170374754..170374760, +
4.66e-66FFCP PHASE2:Hg19::chr7:31933122..31933152,-#_0ef5c471077673d28bbfac349ece0944p@chr7:31933122..31933152, -
4.66e-66FFCP PHASE1:Hg19::chr20:55732283..55732288,-#_0ef5c471077673d28bbfac349ece0944p@chr20:55732283..55732288, -
4.66e-66FFCP PHASE1:Hg19::chr2:101878835..101878850,+#_0ef5c471077673d28bbfac349ece0944p16@C2orf29
4.66e-66FFCP PHASE2:Hg19::chr1:1154360..1154365,-#_0ef5c471077673d28bbfac349ece0944p@chr1:1154360..1154365, -
4.66e-66FFCP PHASE2:Hg19::chr10:29812740..29812749,-#_0ef5c471077673d28bbfac349ece0944p@chr10:29812740..29812749, -
4.66e-66FFCP PHASE1:Hg19::chr10:29812740..29812749,-#_0ef5c471077673d28bbfac349ece0944p@chr10:29812740..29812749, -
4.66e-66FFCP PHASE2:Hg19::chr20:20069786..20069797,-#_0ef5c471077673d28bbfac349ece0944p@chr20:20069786..20069797, -
4.66e-66FFCP PHASE2:Hg19::chr2:101878835..101878850,+#_0ef5c471077673d28bbfac349ece0944p16@C2orf29
4.66e-66FFCP PHASE2:Hg19::chr3:46901107..46901114,-#_0ef5c471077673d28bbfac349ece0944p@chr3:46901107..46901114, -
4.66e-66FFCP PHASE1:Hg19::chr3:46901107..46901114,-#_0ef5c471077673d28bbfac349ece0944p@chr3:46901107..46901114, -
4.66e-66FFCP PHASE1:Hg19::chr4:26165179..26165190,+#_0ef5c471077673d28bbfac349ece0944p47@RBPJ
4.66e-66FFCP PHASE2:Hg19::chr20:55732283..55732288,-#_0ef5c471077673d28bbfac349ece0944p@chr20:55732283..55732288, -
4.66e-66FFCP PHASE1:Hg19::chr2:179581909..179581915,-#_0ef5c471077673d28bbfac349ece0944p@chr2:179581909..179581915, -
4.66e-66FFCP PHASE1:Hg19::chr2:170374754..170374760,+#_0ef5c471077673d28bbfac349ece0944p@chr2:170374754..170374760, +
4.66e-66FFCP PHASE2:Hg19::chr4:26165179..26165190,+#_0ef5c471077673d28bbfac349ece0944p47@RBPJ
1.46e-50FFCP PHASE1:Hg19::chr14:23893278..23893279,-#_5f72c0cbc13672da58fab5aeea56573bp41@MYH7
1.46e-50FFCP PHASE1:Hg19::chr5:80555040..80555044,+#_5f72c0cbc13672da58fab5aeea56573bp@chr5:80555040..80555044, +
1.46e-50FFCP PHASE2:Hg19::chr14:23893278..23893279,-#_5f72c0cbc13672da58fab5aeea56573bp41@MYH7
1.46e-50FFCP PHASE2:Hg19::chr5:80555040..80555044,+#_5f72c0cbc13672da58fab5aeea56573bp@chr5:80555040..80555044, +
1.46e-50FFCP PHASE1:Hg19::chr12:56091538..56091540,-#_5f72c0cbc13672da58fab5aeea56573bp@chr12:56091538..56091540, -
1.46e-50FFCP PHASE2:Hg19::chr12:56091538..56091540,-#_5f72c0cbc13672da58fab5aeea56573bp@chr12:56091538..56091540, -
2.42e-50FFCP PHASE2:Hg19::chr6:123760856..123760861,+#_49c17a05c7c04460dc015b7bd250f88dp4@ENST00000427828, p4@ENST00000434768
2.42e-50FFCP PHASE1:Hg19::chr2:220495902..220495903,+#_49c17a05c7c04460dc015b7bd250f88dp25@SLC4A3
2.42e-50FFCP PHASE2:Hg19::chr8:18708993..18709004,-#_49c17a05c7c04460dc015b7bd250f88dp@chr8:18708993..18709004, -
2.42e-50FFCP PHASE1:Hg19::chr8:18708993..18709004,-#_49c17a05c7c04460dc015b7bd250f88dp@chr8:18708993..18709004, -
2.42e-50FFCP PHASE1:Hg19::chr4:182186203..182186217,-#_49c17a05c7c04460dc015b7bd250f88dp1@ENST00000512547
2.42e-50FFCP PHASE1:Hg19::chr1:202431859..202431868,+#_49c17a05c7c04460dc015b7bd250f88dp20@PPP1R12B
2.42e-50FFCP PHASE1:Hg19::chr15:89647309..89647352,+#_49c17a05c7c04460dc015b7bd250f88dp@chr15:89647309..89647352, +
2.42e-50FFCP PHASE2:Hg19::chr4:182186203..182186217,-#_49c17a05c7c04460dc015b7bd250f88dp1@ENST00000512547
2.42e-50FFCP PHASE2:Hg19::chr2:220495902..220495903,+#_49c17a05c7c04460dc015b7bd250f88dp25@SLC4A3
2.42e-50FFCP PHASE2:Hg19::chr15:89647309..89647352,+#_49c17a05c7c04460dc015b7bd250f88dp@chr15:89647309..89647352, +
2.42e-50FFCP PHASE1:Hg19::chr5:79028810..79028818,+#_49c17a05c7c04460dc015b7bd250f88dp50@CMYA5
2.42e-50FFCP PHASE1:Hg19::chr2:109384584..109384612,+#_49c17a05c7c04460dc015b7bd250f88dp10@RANBP2
2.42e-50FFCP PHASE2:Hg19::chr6:164383767..164383779,-#_49c17a05c7c04460dc015b7bd250f88dp@chr6:164383767..164383779, -
2.42e-50FFCP PHASE2:Hg19::chr5:79028810..79028818,+#_49c17a05c7c04460dc015b7bd250f88dp50@CMYA5
2.42e-50FFCP PHASE1:Hg19::chr6:164383767..164383779,-#_49c17a05c7c04460dc015b7bd250f88dp@chr6:164383767..164383779, -
2.42e-50FFCP PHASE2:Hg19::chr1:202431859..202431868,+#_49c17a05c7c04460dc015b7bd250f88dp20@PPP1R12B
2.42e-50FFCP PHASE2:Hg19::chr6:144329347..144329355,+#_49c17a05c7c04460dc015b7bd250f88dp@chr6:144329347..144329355, +
2.42e-50FFCP PHASE1:Hg19::chr6:144329347..144329355,+#_49c17a05c7c04460dc015b7bd250f88dp@chr6:144329347..144329355, +
2.42e-50FFCP PHASE1:Hg19::chr6:123760856..123760861,+#_49c17a05c7c04460dc015b7bd250f88dp4@ENST00000427828, p4@ENST00000434768
2.42e-50FFCP PHASE2:Hg19::chr2:109384584..109384612,+#_49c17a05c7c04460dc015b7bd250f88dp10@RANBP2
3.99e-50FFCP PHASE2:Hg19::chr2:15679051..15679071,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr2:15679051..15679071, -
3.99e-50FFCP PHASE2:Hg19::chr15:44172060..44172067,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr15:44172060..44172067, -
3.99e-50FFCP PHASE2:Hg19::chr18:19769123..19769149,+#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr18:19769123..19769149, +
3.99e-50FFCP PHASE1:Hg19::chr2:179414945..179414955,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr2:179414945..179414955, -
3.99e-50FFCP PHASE2:Hg19::chr12:57112800..57112809,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr12:57112800..57112809, -
3.99e-50FFCP PHASE1:Hg19::chr14:23854188..23854193,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr14:23854188..23854193, -
3.99e-50FFCP PHASE2:Hg19::chr4:119953362..119953372,+#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr4:119953362..119953372, +
3.99e-50FFCP PHASE1:Hg19::chr4:119953362..119953372,+#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr4:119953362..119953372, +
3.99e-50FFCP PHASE2:Hg19::chr2:179414945..179414955,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr2:179414945..179414955, -
3.99e-50FFCP PHASE1:Hg19::chr18:19769123..19769149,+#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr18:19769123..19769149, +
3.99e-50FFCP PHASE2:Hg19::chr3:69168395..69168418,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr3:69168395..69168418, -
3.99e-50FFCP PHASE1:Hg19::chr2:15679051..15679071,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr2:15679051..15679071, -
3.99e-50FFCP PHASE1:Hg19::chr3:69168395..69168418,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr3:69168395..69168418, -
3.99e-50FFCP PHASE2:Hg19::chr14:23854188..23854193,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr14:23854188..23854193, -
3.99e-50FFCP PHASE1:Hg19::chr12:57112800..57112809,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr12:57112800..57112809, -
3.99e-50FFCP PHASE1:Hg19::chr15:44172060..44172067,-#_3d6f65e3f3539cd0ebe4f93f0fd3756ap@chr15:44172060..44172067, -
6.58e-50FFCP PHASE2:Hg19::chr22:31489401..31489412,+#_856b268f60e47fde15c7bfd7e5356b42p38@SMTN
6.58e-50FFCP PHASE2:Hg19::chr1:11906020..11906041,+#_856b268f60e47fde15c7bfd7e5356b42p@chr1:11906020..11906041, +
6.58e-50FFCP PHASE1:Hg19::chr11:20070858..20070863,-#_856b268f60e47fde15c7bfd7e5356b42p5@NAV2-AS2
6.58e-50FFCP PHASE2:Hg19::chr2:179417310..179417315,-#_856b268f60e47fde15c7bfd7e5356b42p@chr2:179417310..179417315, -
6.58e-50FFCP PHASE2:Hg19::chr16:8736179..8736193,+#_856b268f60e47fde15c7bfd7e5356b42p@chr16:8736179..8736193, +
6.58e-50FFCP PHASE2:Hg19::chr11:20070858..20070863,-#_856b268f60e47fde15c7bfd7e5356b42p5@NAV2-AS2

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002084&oldid=3277365"