UBERON:0005910: Difference between revisions
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|located_in= | |located_in= | ||
|name=transitional epithelium | |name=transitional epithelium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:55, 12 September 2014
| Name: | transitional epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium] | ||
| Xrefs: |
| ||
| Synonyms: |
"epithelium transitionale" EXACT [FMA:63914] "urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium] | ||
| Comments: | see comments for urothelium |
Harnblase_Urothel.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000486(multilaminar epithelium),UBERON:0005911(endo-epithelium) |
|---|
Children
| is a: | UBERON:0000365 (urothelium) |
|---|---|
| derives from: | FF:0102869 (transitional cell carcinoma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10492-107B6 (transitional-cell carcinoma cell line:JMSU1)
- 10565-108A7
- 10587-108D2
- 10707-109H5 (transitional cell carcinoma cell line:Hs 769.T)
- 10751-110D4
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005910 (transitional epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-66 | FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_01ad9ec0a8eec2ec226dbdfe7e0955a3 | p@chr21:39627877..39627884, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_01ad9ec0a8eec2ec226dbdfe7e0955a3 | p@chr21:39627877..39627884, + |
| 3.67e-66 | FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_2763b8b41bc87f11248e7b553bcbd816 | p9@BTBD16 |
| 3.67e-66 | FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_2763b8b41bc87f11248e7b553bcbd816 | p9@BTBD16 |
| 7.47e-59 | FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_3d9dd84f2537054f03afbd5b94600b71 | p6@BTBD16 |
| 7.47e-59 | FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_3d9dd84f2537054f03afbd5b94600b71 | p6@BTBD16 |
| 1.58e-53 | FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_59edf439d4301f8892d16514bde0eb99 | p16@PTHLH |
| 1.58e-53 | FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_59edf439d4301f8892d16514bde0eb99 | p16@PTHLH |
| 2.36e-53 | FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_380f96b132224e9774047783ea8500f2 | p@chr5:61213179..61213189, - |
| 2.36e-53 | FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_380f96b132224e9774047783ea8500f2 | p@chr5:61213179..61213189, - |
| 7.51e-50 | FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_0da0bf1df99cfe391a2fa4fb3a6f2a73 | p@chrX:102977640..102977644, - |
| 7.51e-50 | FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_0da0bf1df99cfe391a2fa4fb3a6f2a73 | p@chrX:102977640..102977644, - |
| 8.88e-50 | FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_54e2a6dd0ca490a86cc2f243dd9c8067 | p4@IFNK |
| 8.88e-50 | FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_54e2a6dd0ca490a86cc2f243dd9c8067 | p4@IFNK |
| 1.77e-48 | FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_42c3e9ef45ae9dbf5158c29d68e34732 | p@chr1:40492754..40492762, + |
| 1.77e-48 | FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_42c3e9ef45ae9dbf5158c29d68e34732 | p@chr1:40492754..40492762, + |
| 1.99e-48 | FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_0cceaadcd152156757984ed70c0f9027 | p@chr10:3954276..3954287, + |
| 1.99e-48 | FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_0cceaadcd152156757984ed70c0f9027 | p@chr10:3954276..3954287, + |
| 5.31e-45 | FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_2ca69fbf0e628be76ce7053ea92239ce | p17@PTHLH |
| 5.31e-45 | FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_2ca69fbf0e628be76ce7053ea92239ce | p17@PTHLH |
| 9.76e-45 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_eeabb5ee59e516e43dfb19b396a3c16d | p38@PTK2 |
| 9.76e-45 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_eeabb5ee59e516e43dfb19b396a3c16d | p38@PTK2 |
| 3.16e-43 | FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_cc69465382fa13123aa14452b8331689 | p@chr5:61213127..61213133, - |
| 3.16e-43 | FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_cc69465382fa13123aa14452b8331689 | p@chr5:61213127..61213133, - |
| 6.48e-43 | FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_7aa9a0c967e8e291d4deef2631f669fd | p@chr21:44168074..44168079, + |
| 6.48e-43 | FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_7aa9a0c967e8e291d4deef2631f669fd | p@chr21:44168074..44168079, + |
| 8.63e-43 | FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_75012e214b7229c0b2d09aa8ed576d4f | p@chr4:125341514..125341526, - |
| 8.63e-43 | FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_75012e214b7229c0b2d09aa8ed576d4f | p@chr4:125341514..125341526, - |
| 3.35e-41 | FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_8fe53dbd37ca33c32d1adcb212566e9e | p@chr10:127763979..127763984, + |
| 3.35e-41 | FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_8fe53dbd37ca33c32d1adcb212566e9e | p@chr10:127763979..127763984, + |
| 5.48e-38 | FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_f9abf6040821467b6ed5f90406a06382 | p@chr11:127965855..127965866, + |
| 5.48e-38 | FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_f9abf6040821467b6ed5f90406a06382 | p@chr11:127965855..127965866, + |
| 7.3e-38 | FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_fa0fb38e1f5f683932915b8d0060f5a4 | p@chr19:15065111..15065171, - |
| 7.3e-38 | FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_fa0fb38e1f5f683932915b8d0060f5a4 | p@chr19:15065111..15065171, - |
| 2.99e-36 | FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_7010605380b2aad8d0cdfb13b12bd729 | p3@BTBD16 |
| 2.99e-36 | FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_7010605380b2aad8d0cdfb13b12bd729 | p3@BTBD16 |
| 8.03e-36 | FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_c8889e736d843a715b4c0f062a275f88 | p13@MTHFD1L |
| 8.03e-36 | FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_c8889e736d843a715b4c0f062a275f88 | p13@MTHFD1L |
| 2.14e-35 | FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_c4d7c1d142308803fab3040160968170 | p@chr7:2019948..2019961, - |
| 2.14e-35 | FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_c4d7c1d142308803fab3040160968170 | p@chr7:2019948..2019961, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_d4e6e2239bd229570b4cb5c7f42bb9bc | p@chr15:101282110..101282113, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:6246612..6246613,+#_d4e6e2239bd229570b4cb5c7f42bb9bc | p@chr19:6246612..6246613, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_d4e6e2239bd229570b4cb5c7f42bb9bc | p2@ENST00000427341 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:6246612..6246613,+#_d4e6e2239bd229570b4cb5c7f42bb9bc | p@chr19:6246612..6246613, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_d4e6e2239bd229570b4cb5c7f42bb9bc | p2@ENST00000427341 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_d4e6e2239bd229570b4cb5c7f42bb9bc | p@chr15:101282110..101282113, + |
| 5.8e-34 | FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_64b07ba9a04d27435c94fd771a6bde2d | p30@AGAP3 |
| 5.8e-34 | FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_64b07ba9a04d27435c94fd771a6bde2d | p30@AGAP3 |
| 6.31e-34 | FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_087a746d89085ea0f0e8df8af69c34de | p@chr2:31560793..31560814, - |
| 6.31e-34 | FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_087a746d89085ea0f0e8df8af69c34de | p@chr2:31560793..31560814, - |
| 6.72e-34 | FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_2c1349644b5d9419e9048bbd81ba846d | p@chr13:20934450..20934456, + |
| 6.72e-34 | FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_2c1349644b5d9419e9048bbd81ba846d | p@chr13:20934450..20934456, + |
| 8.35e-34 | FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_1e487aa7d994a605b81a358e83779637 | p@chr14:85935018..85935023, - |
| 8.35e-34 | FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_1e487aa7d994a605b81a358e83779637 | p@chr14:85935018..85935023, - |
| 9.87e-34 | FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_47c8243cce891059ec2be54d101de20b | p@chr9:21564382..21564387, - |
| 9.87e-34 | FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_47c8243cce891059ec2be54d101de20b | p@chr9:113802868..113802878, - |
| 9.87e-34 | FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_47c8243cce891059ec2be54d101de20b | p@chr9:21564382..21564387, - |
| 9.87e-34 | FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_47c8243cce891059ec2be54d101de20b | p@chr9:113802868..113802878, - |
| 1.17e-33 | FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_80e26c9c8b2635fabe5d57fd84d5043f | p@chr19:43965689..43965700, - |
| 1.17e-33 | FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_80e26c9c8b2635fabe5d57fd84d5043f | p@chr19:43965689..43965700, - |
| 2.29e-33 | FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_22de4483056ddaaf7b5f7207eb1d0cb5 | p32@FRMD6 |
| 2.29e-33 | FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_22de4483056ddaaf7b5f7207eb1d0cb5 | p32@FRMD6 |
| 6.02e-33 | FFCP PHASE2:Hg19::chr12:47472684..47472703,-#_b9ffca5c03ed64dc84071ef4781a0823 | p12@AMIGO2 |
| 6.02e-33 | FFCP PHASE1:Hg19::chr12:47472684..47472703,-#_b9ffca5c03ed64dc84071ef4781a0823 | p12@AMIGO2 |
| 3.76e-32 | FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_e3f8c60baa109a4e2d5a2d49bfe6e64e | p@chr21:45020721..45020728, - |
| 3.76e-32 | FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_e3f8c60baa109a4e2d5a2d49bfe6e64e | p@chr21:45020721..45020728, - |
| 5.17e-32 | FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_5c7ef8103e7fb58391e185e9dfe1c06f | p@chr8:143814087..143814102, - |
| 5.17e-32 | FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_5c7ef8103e7fb58391e185e9dfe1c06f | p@chr8:143814087..143814102, - |
| 1.05e-30 | FFCP PHASE1:Hg19::chr9:21564331..21564360,-#_827caf6465f005dc9a382e555935021a | p@chr9:21564331..21564360, - |
| 1.05e-30 | FFCP PHASE2:Hg19::chr9:21564331..21564360,-#_827caf6465f005dc9a382e555935021a | p@chr9:21564331..21564360, - |
| 1.69e-30 | FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_92c47b7f012813d034b7a50701d26c10 | p@chr1:183192299..183192310, + |
| 1.69e-30 | FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_92c47b7f012813d034b7a50701d26c10 | p@chr1:183192299..183192310, + |
| 1.86e-30 | FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_d7d572eb32009ba8930414e672f7a213 | p@chr2:20402306..20402318, - |
| 1.86e-30 | FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_d7d572eb32009ba8930414e672f7a213 | p@chr4:125341479..125341498, - |
| 1.86e-30 | FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_d7d572eb32009ba8930414e672f7a213 | p@chr2:20402306..20402318, - |
| 1.86e-30 | FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_d7d572eb32009ba8930414e672f7a213 | p@chr4:125341479..125341498, - |
| 2.52e-30 | FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_61d6ec3230db6f5c8d4bde3c386286fa | p1@IFNK |
| 2.52e-30 | FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_61d6ec3230db6f5c8d4bde3c386286fa | p1@IFNK |
| 2.78e-30 | FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_900c804e4016522403f9d5b701ddc5e1 | p6@GJB6 |
| 2.78e-30 | FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_900c804e4016522403f9d5b701ddc5e1 | p@chr1:99387558..99387571, - |
| 2.78e-30 | FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_900c804e4016522403f9d5b701ddc5e1 | p@chr1:99387558..99387571, - |
| 2.78e-30 | FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_900c804e4016522403f9d5b701ddc5e1 | p6@GJB6 |
| 2.37e-29 | FFCP PHASE2:Hg19::chr20:56273255..56273292,-#_dd15e7ecbdb5e7d8dd63ba993cf8367c | p@chr20:56273255..56273292, - |
| 2.37e-29 | FFCP PHASE1:Hg19::chr20:56273255..56273292,-#_dd15e7ecbdb5e7d8dd63ba993cf8367c | p@chr20:56273255..56273292, - |
| 3.69e-29 | FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_a2dce45daf2df3817eff58379aaad884 | p2@BTBD16 |
| 3.69e-29 | FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_a2dce45daf2df3817eff58379aaad884 | p2@BTBD16 |
| 4.92e-28 | FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_38efc53c629716dca201ca80317f209f | p@chr1:183212642..183212654, + |
| 4.92e-28 | FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_38efc53c629716dca201ca80317f209f | p@chr1:183212642..183212654, + |
| 7.78e-28 | FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_ecaf4c5be99d301d9090309bae6ddf44 | p@chr6:44096519..44096530, - |
| 7.78e-28 | FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_ecaf4c5be99d301d9090309bae6ddf44 | p19@NDST1 |
| 7.78e-28 | FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_ecaf4c5be99d301d9090309bae6ddf44 | p19@NDST1 |
| 7.78e-28 | FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_ecaf4c5be99d301d9090309bae6ddf44 | p@chr6:44096519..44096530, - |
| 1.19e-27 | FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_0f3a09a81b679800d55f084156e50466 | p@chr13:20762566..20762577, - |
| 1.19e-27 | FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_0f3a09a81b679800d55f084156e50466 | p@chr13:20762566..20762577, - |
| 1.67e-27 | FFCP PHASE1:Hg19::chr3:13921498..13921503,-#_0773149d976b8bb3ee249861a9c66bec | p6@WNT7A |
| 1.67e-27 | FFCP PHASE2:Hg19::chr3:13921498..13921503,-#_0773149d976b8bb3ee249861a9c66bec | p6@WNT7A |
| 2.08e-27 | FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_9cafdfc6754af5f46254a8ba9ba7f2d9 | p25@KCNJ15 |
| 2.08e-27 | FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_9cafdfc6754af5f46254a8ba9ba7f2d9 | p25@KCNJ15 |
| 2.34e-27 | FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_fa86d221ba53578cab9b86a46af71fbd | p@chr5:146263947..146263959, - |
| 2.34e-27 | FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_fa86d221ba53578cab9b86a46af71fbd | p@chr5:146263947..146263959, - |
