FFCP PHASE1:Mm9::chr18:66663824..66663841,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:66663824..66663841,+
|short_description=p1@Gm9926
|description=CAGE_peak_1_at_Gm9926_5end
|association_with_transcript=0bp_to_NR_040528,uc008ffu.1_5end
|...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=100503565 | |EntrezGene=100503565 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_NR_040528,uc008ffu.1_5end | |||
|cluster_id=chr18:66663824..66663841,+ | |||
|description=CAGE_peak_1_at_Gm9926_5end | |||
|id=chr18:66663824..66663841,+ | |||
|ontology_enrichment_celltype=CL:0002563!6.61e-09!9;CL:0002251!6.61e-09!9;CL:0000239!5.97e-07!6;CL:0000677!5.97e-07!6;CL:0000212!5.97e-07!6;CL:0000584!5.97e-07!6;CL:0002076!9.62e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.42e-11,9;CL:0002251,6.42e-11,9;CL:0002076,1.22e-08,15;CL:0000239,1.96e-08,6;CL:0000677,1.96e-08,6;CL:0000584,1.96e-08,6;CL:0000066,3.61e-07,25;CL:0000075,5.28e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!2.59e-23!59;UBERON:0000160!8.04e-22!43;UBERON:0000344!3.05e-14!15;UBERON:0001242!1.97e-12!13;UBERON:0000060!1.97e-12!13;UBERON:0001262!1.97e-12!13;UBERON:0004786!1.97e-12!13;UBERON:0004119!5.03e-12!130;UBERON:0000925!5.03e-12!130;UBERON:0006595!5.03e-12!130;UBERON:0001007!1.72e-11!128;UBERON:0001555!1.72e-11!128;UBERON:0007026!1.72e-11!128;UBERON:0004921!2.33e-10!126;UBERON:0004185!2.33e-10!126;UBERON:0004923!2.10e-09!24;UBERON:0003350!6.61e-09!9;UBERON:0004808!6.61e-09!9;UBERON:0001277!6.61e-09!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.19e-30,31;UBERON:0005409,3.38e-30,47;UBERON:0000344,1.03e-17,15;UBERON:0001242,2.08e-15,13;UBERON:0001262,2.08e-15,13;UBERON:0004786,2.08e-15,13;UBERON:0004923,1.44e-11,24;UBERON:0003350,6.42e-11,9;UBERON:0004808,6.42e-11,9;UBERON:0001277,6.42e-11,9;UBERON:0000485,2.01e-08,11;UBERON:0004119,5.74e-08,118;UBERON:0000925,5.74e-08,118;UBERON:0006595,5.74e-08,118;UBERON:0001007,7.71e-08,116;UBERON:0001555,7.71e-08,116;UBERON:0007026,7.71e-08,116;UBERON:0004921,8.68e-07,114 | |||
|phase1_expression=0,303.608604646244,338.064434866425,274.335039655295,270.483694171027,139.843433502604,147.409576215777,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8064285749853,0,0,247.828262906987,248.679660676812,260.701311708219,280.856821495717,239.819481979394,201.614848043213,140.632812406041,147.007328564467,0,0,0,34.662194370153,21.610503896604,30.8295727956177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,9.40977614882737,0,0,0,0,0,0,0,1.08245520505607,1.26679932737549,2.02209778005913,26.2622923353838,0,0,0,0,0.230615497256059,0,0,0.376999773989026,35.8432703214842,0,0,0,0,0,20.5030937339934,0,0,124.918499997001,0,0,0,0,0,0,0,0,0,0,0,0.373220911830279,0.758168275301024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,309.602399655819,125.614019165184,0.426576501070468,1.16118335930219,8.24751752461397,36.9080850060717,52.9259744350791,54.4045290681919,94.4312832473578,51.3860738738914,50.2670417600539,38.199642631901,50.1057703896139,93.477218500039,96.1814321942389,100.964625539964,0.379335801906163,0.342745537829186,2.25415471346161,0.814605311381257,1.35766741017338,0.49095073923223,1.13825766823663,6.05201606716369,8.16393384775149,6.91024117962083,0,0.166845105716094,0,0,0.202860121388503,0.241177159752417,0,0.287696137450811,0,0.274561413188081,0,0.372140947668503,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21390318077491,1.209294227859,0.377210159511796,0.295301892880773,0.307435147943927,11.8877014857382,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,1.27099242518292,0,0,0,0,0,0.164140899745061,90.0675785186239,0,0,0,0,0,0,0,0,0,0,46.7788602827406,0.316335993581135,2.23651413839534,11.1245501046455,15.2634456090562,18.7791804821713,24.6801753884222,24.5480763504248,30.6254452121315,11.5357326229696,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0,0,0,0,0.316011120628178,0,0,0.129920822977795,0.358053391334963,0.39736270956253,0.240390899039938,0.590758108698309,0.201932899896295,0.228620419965,0,0.682205165178267,0.481059208201647,1.05189211963412,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,1.65459157605013,4.22268782823069,3.5025959730612,5.13470735346904,3.28506375292937,4.56262739802432,4.14977951049368,5.43120743325318,3.90553429669703,3.27382173046996,4.28664322154766,3.59241410429052,3.27945674788299,4.53294490883637,4.41596760403192,5.14303878578123,5.14679837862079,2.38436189947321,4.0696996657052,3.57615645578256,3.80765735512544,4.75612729469209,3.6829759601298,3.53090695999241,3.36685362994643,3.44041552560105,3.44765688314472,6.54769669071503,2.94379998253335,2.3148793317737,0,4.44470056046276,2.36358159453128,0,0.220591419119515,0.231867835620421 | |phase1_expression=0,303.608604646244,338.064434866425,274.335039655295,270.483694171027,139.843433502604,147.409576215777,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8064285749853,0,0,247.828262906987,248.679660676812,260.701311708219,280.856821495717,239.819481979394,201.614848043213,140.632812406041,147.007328564467,0,0,0,34.662194370153,21.610503896604,30.8295727956177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,9.40977614882737,0,0,0,0,0,0,0,1.08245520505607,1.26679932737549,2.02209778005913,26.2622923353838,0,0,0,0,0.230615497256059,0,0,0.376999773989026,35.8432703214842,0,0,0,0,0,20.5030937339934,0,0,124.918499997001,0,0,0,0,0,0,0,0,0,0,0,0.373220911830279,0.758168275301024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,309.602399655819,125.614019165184,0.426576501070468,1.16118335930219,8.24751752461397,36.9080850060717,52.9259744350791,54.4045290681919,94.4312832473578,51.3860738738914,50.2670417600539,38.199642631901,50.1057703896139,93.477218500039,96.1814321942389,100.964625539964,0.379335801906163,0.342745537829186,2.25415471346161,0.814605311381257,1.35766741017338,0.49095073923223,1.13825766823663,6.05201606716369,8.16393384775149,6.91024117962083,0,0.166845105716094,0,0,0.202860121388503,0.241177159752417,0,0.287696137450811,0,0.274561413188081,0,0.372140947668503,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21390318077491,1.209294227859,0.377210159511796,0.295301892880773,0.307435147943927,11.8877014857382,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,1.27099242518292,0,0,0,0,0,0.164140899745061,90.0675785186239,0,0,0,0,0,0,0,0,0,0,46.7788602827406,0.316335993581135,2.23651413839534,11.1245501046455,15.2634456090562,18.7791804821713,24.6801753884222,24.5480763504248,30.6254452121315,11.5357326229696,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0,0,0,0,0.316011120628178,0,0,0.129920822977795,0.358053391334963,0.39736270956253,0.240390899039938,0.590758108698309,0.201932899896295,0.228620419965,0,0.682205165178267,0.481059208201647,1.05189211963412,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,1.65459157605013,4.22268782823069,3.5025959730612,5.13470735346904,3.28506375292937,4.56262739802432,4.14977951049368,5.43120743325318,3.90553429669703,3.27382173046996,4.28664322154766,3.59241410429052,3.27945674788299,4.53294490883637,4.41596760403192,5.14303878578123,5.14679837862079,2.38436189947321,4.0696996657052,3.57615645578256,3.80765735512544,4.75612729469209,3.6829759601298,3.53090695999241,3.36685362994643,3.44041552560105,3.44765688314472,6.54769669071503,2.94379998253335,2.3148793317737,0,4.44470056046276,2.36358159453128,0,0.220591419119515,0.231867835620421 | ||
|short_description=p1@Gm9926 | |||
}} | }} |
Latest revision as of 15:57, 1 October 2015
Short description: | p1@Gm9926 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm9926_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 0bp_to_NR_040528, uc008ffu.1_5end |
EntrezGene: | Gm9926 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.42e-11 | 9 |
epithelial cell of alimentary canal | 6.42e-11 | 9 |
endo-epithelial cell | 1.22e-08 | 15 |
brush border epithelial cell | 1.96e-08 | 6 |
gut absorptive cell | 1.96e-08 | 6 |
enterocyte | 1.96e-08 | 6 |
epithelial cell | 3.61e-07 | 25 |
columnar/cuboidal epithelial cell | 5.28e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.19e-30 | 31 |
gastrointestinal system | 3.38e-30 | 47 |
mucosa | 1.03e-17 | 15 |
intestinal mucosa | 2.08e-15 | 13 |
wall of intestine | 2.08e-15 | 13 |
gastrointestinal system mucosa | 2.08e-15 | 13 |
organ component layer | 1.44e-11 | 24 |
epithelium of mucosa | 6.42e-11 | 9 |
gastrointestinal system epithelium | 6.42e-11 | 9 |
intestinal epithelium | 6.42e-11 | 9 |
simple columnar epithelium | 2.01e-08 | 11 |
endoderm-derived structure | 5.74e-08 | 118 |
endoderm | 5.74e-08 | 118 |
presumptive endoderm | 5.74e-08 | 118 |
digestive system | 7.71e-08 | 116 |
digestive tract | 7.71e-08 | 116 |
primitive gut | 7.71e-08 | 116 |
subdivision of digestive tract | 8.68e-07 | 114 |