FFCP PHASE1:Mm9::chr7:19152540..19152546,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:19152540..19152546,-
|short_description=p2@Psg27
|description=CAGE_peak_2_at_Psg27_5end
|association_with_transcript=107bp_to_ENSMUST00000094794,NM_0010371...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=545925 | |EntrezGene=545925 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=31 | |||
|TSSclassifier=NA | |||
|UniProt=Q497W2 | |UniProt=Q497W2 | ||
|association_with_transcript=107bp_to_ENSMUST00000094794,NM_001037168,uc009fjn.1_5end | |||
|cluster_id=chr7:19152540..19152546,- | |||
|description=CAGE_peak_2_at_Psg27_5end | |||
|id=chr7:19152540..19152546,- | |||
|ontology_enrichment_celltype=CL:0000473!6.51e-17!3;CL:0000627!6.51e-17!3;CL:0000682!6.51e-17!3;CL:0000239!1.63e-14!6;CL:0000677!1.63e-14!6;CL:0000212!1.63e-14!6;CL:0000584!1.63e-14!6;CL:0000075!1.79e-12!7;CL:0000066!6.77e-10!25;CL:0002563!9.63e-10!9;CL:0002251!9.63e-10!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,9.40e-25,3;CL:0000239,1.93e-21,6;CL:0000677,1.93e-21,6;CL:0000584,1.93e-21,6;CL:0000075,1.93e-18,7;CL:0000066,2.60e-15,25;CL:0002563,1.98e-14,9;CL:0002251,1.98e-14,9;CL:0000473,5.38e-11,7;CL:0002076,8.72e-09,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!7.81e-21!24;UBERON:0005631!5.76e-17!3;UBERON:0000478!5.76e-17!3;UBERON:0000158!5.76e-17!3;UBERON:0000344!1.47e-16!15;UBERON:0005795!2.33e-12!4;UBERON:0000995!2.33e-12!4;UBERON:0001987!1.03e-11!2;UBERON:0003124!1.03e-11!2;UBERON:0004340!1.03e-11!2;UBERON:0001962!2.12e-11!2;UBERON:0001961!2.12e-11!2;UBERON:0001744!2.12e-11!2;UBERON:0001242!4.38e-10!13;UBERON:0000060!4.38e-10!13;UBERON:0001262!4.38e-10!13;UBERON:0004786!4.38e-10!13;UBERON:0003975!5.39e-10!5;UBERON:0003350!9.63e-10!9;UBERON:0004808!9.63e-10!9;UBERON:0001277!9.63e-10!9;UBERON:0000485!5.34e-08!11;UBERON:0002465!6.89e-08!3;UBERON:0000305!6.50e-07!1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,8.66e-21,24;UBERON:0000344,1.06e-18,15;UBERON:0001962,2.06e-16,2;UBERON:0001961,2.06e-16,2;UBERON:0001744,2.06e-16,2;UBERON:0003350,1.98e-14,9;UBERON:0004808,1.98e-14,9;UBERON:0001277,1.98e-14,9;UBERON:0005631,3.98e-12,3;UBERON:0000478,3.98e-12,3;UBERON:0000158,3.98e-12,3;UBERON:0000485,7.17e-12,11;UBERON:0002465,2.84e-11,3;UBERON:0001242,4.30e-10,13;UBERON:0001262,4.30e-10,13;UBERON:0004786,4.30e-10,13;UBERON:0000305,1.19e-09,1;UBERON:0003199,4.39e-09,1 | |||
|phase1_expression=0,3.83872948403297,5.0049916332849,0,0,1.6787927191189,5.60670337429262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55987876469451,3.21172993494038,4.01962374880514,4.30761996159075,8.40337807474967,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1013332899218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704015124191131,80.4961869282517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,3.83872948403297,5.0049916332849,0,0,1.6787927191189,5.60670337429262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55987876469451,3.21172993494038,4.01962374880514,4.30761996159075,8.40337807474967,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1013332899218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704015124191131,80.4961869282517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@Psg27 | |||
}} | }} |
Latest revision as of 07:46, 26 September 2015
Short description: | p2@Psg27 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Psg27_5end |
Coexpression cluster: | MCL_coexpression_mm9:31 |
Association with transcript: | 107bp_to_ENSMUST00000094794, NM_001037168, uc009fjn.1_5end |
EntrezGene: | Psg27 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 9.40e-25 | 3 |
brush border epithelial cell | 1.93e-21 | 6 |
gut absorptive cell | 1.93e-21 | 6 |
enterocyte | 1.93e-21 | 6 |
columnar/cuboidal epithelial cell | 1.93e-18 | 7 |
epithelial cell | 2.60e-15 | 25 |
intestinal epithelial cell | 1.98e-14 | 9 |
epithelial cell of alimentary canal | 1.98e-14 | 9 |
defensive cell | 5.38e-11 | 7 |
endo-epithelial cell | 8.72e-09 | 15 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 8.66e-21 | 24 |
mucosa | 1.06e-18 | 15 |
gut-associated lymphoid tissue | 2.06e-16 | 2 |
mucosa-associated lymphoid tissue | 2.06e-16 | 2 |
lymphoid tissue | 2.06e-16 | 2 |
epithelium of mucosa | 1.98e-14 | 9 |
gastrointestinal system epithelium | 1.98e-14 | 9 |
intestinal epithelium | 1.98e-14 | 9 |
extraembryonic membrane | 3.98e-12 | 3 |
extraembryonic structure | 3.98e-12 | 3 |
membranous layer | 3.98e-12 | 3 |
simple columnar epithelium | 7.17e-12 | 11 |
lymphoid system | 2.84e-11 | 3 |
intestinal mucosa | 4.30e-10 | 13 |
wall of intestine | 4.30e-10 | 13 |
gastrointestinal system mucosa | 4.30e-10 | 13 |
amnion | 1.19e-09 | 1 |
egg chamber | 4.39e-09 | 1 |