Personal tools

UBERON:0000965: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0000965 |name=lens |namespace= |def="Transparent part of eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)] |xre...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000965
|name=lens
|namespace=
|def="Transparent part of eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
|xref=AAO:0010348;;BTO:0000723;;EHDAA:9057;;EMAPA:17838;;EV:0100343;;FMA:58241;;MA:0000275;;MAT:0000141;;MESH:A.09.371.509;;MIAA:0000141;;ncithesaurus:Crystalline_Lens;;OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA;;RETIRED_EHDAA2:0000975;;SCTID:181169005;;TAO:0000035;;VHOG:0000169;;XAO:0000008;;ZFA:0000035
|is_a=UBERON:0004121;;UBERON:0005389
|synonym="camera-type eye lens" EXACT [GO:0002088];;"crystalline lens" RELATED [BTO:0000723];;"eye lens" EXACT [];;"lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29];;"ocular lens" RELATED [BTO:0000723]
|comment=This class excludes compound eye corneal lenses. The naming may be too vertebrate-centric, in which case it could be renamed to camera-eye lens
|alt_id=UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035
|alt_id=UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035
|disjoint_from=
|comment=Taxon notes: This class excludes compound eye corneal lenses.
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Transparent part of camera-type eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003073;;UBERON:0005426
|develops_from=UBERON:0003073;;UBERON:0005426
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000965
|is_a=UBERON:0004121 ;;UBERON:0005389
|is_obsolete=
|located_in=
|located_in=
|name=lens of camera-type eye
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001801
|part_of=UBERON:0001801
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim;;vertebrate_core
|synonym="camera-type eye lens" EXACT [GO:0002088];;"crystalline lens" RELATED [BTO:0000723];;"eye lens" EXACT SENSU [];;"lens" EXACT SENSU [];;"lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29];;"ocular lens" RELATED [BTO:0000723]
|union_of=
|xref=AAO:0010348;;BTO:0000723;;EHDAA:9057;;EMAPA:17838;;EV:0100343;;FMA:58241;;MA:0000275;;MAT:0000141;;MESH:A.09.371.509;;MIAA:0000141;;ncithesaurus:Crystalline_Lens;;OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA;;RETIRED_EHDAA2:0000975;;SCTID:181169005;;TAO:0000035;;VHOG:0000169;;XAO:0000008;;ZFA:0000035
}}
}}

Latest revision as of 17:12, 12 September 2014

Name:lens of camera-type eye
Namespace:FANTOM
Definition:"Transparent part of camera-type eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
Xrefs:
links:

AAO:0010348
BTO:0000723
EHDAA:9057
EMAPA:17838
EV:0100343
FMA:58241
MA:0000275
MAT:0000141
MESH:A.09.371.509
MIAA:0000141
ncithesaurus:Crystalline_Lens
OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA
RETIRED_EHDAA2:0000975
SCTID:181169005
TAO:0000035
VHOG:0000169
XAO:0000008

ZFA:0000035
Synonyms: "camera-type eye lens" EXACT [GO:0002088]
"crystalline lens" RELATED [BTO:0000723]
"eye lens" EXACT SENSU []
"lens" EXACT SENSU []
"lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29]
"ocular lens" RELATED [BTO:0000723]
Comments:Taxon notes: This class excludes compound eye corneal lenses.
Alt_id: UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005389(transparent eye structure)
develops_from:UBERON:0003073(lens placode),UBERON:0005426(lens vesicle)
part_of:UBERON:0001801(anterior segment of eyeball)



Children

part of:UBERON:0001803 (epithelium of lens),CL:0002222 (vertebrate lens cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000965 (lens of camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_bf7628fdbb77c7c9c868880a0ad37790p1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_bf7628fdbb77c7c9c868880a0ad37790p1@CRYBB3
3.32e-74FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_3501be66381186fb3e195617408f3ce4p1@CRYBB2
3.32e-74FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_3501be66381186fb3e195617408f3ce4p1@CRYBB2
5.48e-74FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_b8f0f55557df01aa5642e9a0d4d2497ep1@LIM2
5.48e-74FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_b8f0f55557df01aa5642e9a0d4d2497ep1@LIM2
3.8e-56FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_c2e50d6bb75fbf6a15f08eabbd28854bp1@CRYBA4
3.8e-56FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_c2e50d6bb75fbf6a15f08eabbd28854bp1@CRYBA4
3.1e-50FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5p@chr13:104778247..104778293, +
5.14e-50FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38p7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38p2@CU686889
5.14e-50FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38p2@CU686889
5.14e-50FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38p7@SLC25A21
6.6e-50FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_f21dd70918184d5d51b8304d91aed573p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_f21dd70918184d5d51b8304d91aed573p1@CU686889
6.6e-50FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_f21dd70918184d5d51b8304d91aed573p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_f21dd70918184d5d51b8304d91aed573p@chr21:44589339..44589372, -
6.6e-50FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_f21dd70918184d5d51b8304d91aed573p@chr12:132475501..132475504, +
6.6e-50FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_f21dd70918184d5d51b8304d91aed573p1@CU686889
6.27e-44FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_e8c218d7a11798d28d4e7e47b24acbb2p11@PAX6
6.27e-44FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_e8c218d7a11798d28d4e7e47b24acbb2p11@PAX6
1.92e-41FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_eb39978568cba818d6e32e02f0035198p1@CRYGS
1.92e-41FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_eb39978568cba818d6e32e02f0035198p1@CRYGS
4.94e-40FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_73bf020a98b5a1f6d05a4eb11c02af4fp@chr5:112173525..112173532, +
4.94e-40FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_73bf020a98b5a1f6d05a4eb11c02af4fp@chr5:112173525..112173532, +
1.62e-37FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_0e84c0a9e92db5ba165f7c8b201df4ddp7@PTPRU
1.62e-37FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_0e84c0a9e92db5ba165f7c8b201df4ddp7@PTPRU
2.1e-35FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_fa803b69ae0ce2906078d7f7c08d9ff3p3@SIX6
2.1e-35FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_fa803b69ae0ce2906078d7f7c08d9ff3p3@SIX6
6.73e-35FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_ca62458fc3b136fdbccb6798e6cf7486p4@SIX6
6.73e-35FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_ca62458fc3b136fdbccb6798e6cf7486p4@SIX6
5.06e-34FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_c9c138dd5d177440519d5d3550fa7281p@chr11:31667372..31667383, -
5.06e-34FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_c9c138dd5d177440519d5d3550fa7281p@chr11:31667372..31667383, -
8.36e-34FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_4d2594aee41f6b0adef4df16ecb8b9a5p@chr19:1470631..1470648, -
8.36e-34FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_4d2594aee41f6b0adef4df16ecb8b9a5p@chr19:1470631..1470648, -
5.55e-33FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_e6a1edd1e2367b4c1ab623f897ebb3c6p1@CRYAA
5.55e-33FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_e6a1edd1e2367b4c1ab623f897ebb3c6p1@CRYAA
9.55e-33FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_841f0e4562df6ebadbe03070c0cd0808p1@CRYBA1
9.55e-33FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_841f0e4562df6ebadbe03070c0cd0808p1@CRYBA1
2.74e-29FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_6a8ad5ba345672fb60e4aae9b0a62da5p2@ENST00000456467
2.74e-29FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_6a8ad5ba345672fb60e4aae9b0a62da5p2@ENST00000456467
3.65e-29FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_8bac19553cde3b06335c25326de51b0ep13@NRCAM
3.65e-29FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_8bac19553cde3b06335c25326de51b0ep13@NRCAM
7.46e-29FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_5e0973ef2a9a8f1261fe11caddb62f58p@chr13:114202163..114202178, +
7.46e-29FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_5e0973ef2a9a8f1261fe11caddb62f58p@chr13:114202163..114202178, +
1.36e-28FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_72194d1989075d42e04136a3c48eb207p10@NLGN1
1.36e-28FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_72194d1989075d42e04136a3c48eb207p10@NLGN1
2.64e-27FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_7992cd3a08195f1d2aac3a6862052f7fp10@SIX3
2.64e-27FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_7992cd3a08195f1d2aac3a6862052f7fp10@SIX3
8.39e-27FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_fa704f3d401b243ec1f60d3cda148b1fp2@SIX6
8.39e-27FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_fa704f3d401b243ec1f60d3cda148b1fp2@SIX6
5.56e-26FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_99b3056610c333f5cc0da1456e00e964p@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_99b3056610c333f5cc0da1456e00e964p@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_99b3056610c333f5cc0da1456e00e964p3@CLRN1
5.56e-26FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_99b3056610c333f5cc0da1456e00e964p@chr9:75848662..75848671, -
5.56e-26FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_99b3056610c333f5cc0da1456e00e964p@chrX:43587410..43587413, +
5.56e-26FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_99b3056610c333f5cc0da1456e00e964p@chr19:40920692..40920700, -
5.56e-26FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_99b3056610c333f5cc0da1456e00e964p1@GJA8
5.56e-26FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_99b3056610c333f5cc0da1456e00e964p3@CLRN1
5.56e-26FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_99b3056610c333f5cc0da1456e00e964p@chr20:35861148..35861151, +
5.56e-26FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_99b3056610c333f5cc0da1456e00e964p@chrX:43587410..43587413, +
5.56e-26FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_99b3056610c333f5cc0da1456e00e964p@chr9:75848662..75848671, -
5.56e-26FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_99b3056610c333f5cc0da1456e00e964p1@GJA8
7.14e-26FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr1:115873480..115873484, +
7.14e-26FFCP PHASE2:Hg19::chr5:124468141..124468176,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr5:124468141..124468176, -
7.14e-26FFCP PHASE2:Hg19::chr5:45038620..45038622,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr5:45038620..45038622, +
7.14e-26FFCP PHASE2:Hg19::chr2:693025..693036,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:693025..693036, +
7.14e-26FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr10:73406056..73406065, +
7.14e-26FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:10538258..10538282, +
7.14e-26FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_d394e44e71c606f8fbe367682d8ee9d4p4@CU686889
7.14e-26FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr4:140656282..140656285, -
7.14e-26FFCP PHASE1:Hg19::chr1:45769711..45769721,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr1:45769711..45769721, -
7.14e-26FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr16:85617064..85617073, -
7.14e-26FFCP PHASE2:Hg19::chr5:464155..464205,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr5:464155..464205, +
7.14e-26FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr21:44592512..44592521, +
7.14e-26FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_d394e44e71c606f8fbe367682d8ee9d4p11@UQCC
7.14e-26FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr21:44592358..44592365, +
7.14e-26FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr1:115873480..115873484, +
7.14e-26FFCP PHASE2:Hg19::chr21:36253916..36253918,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr21:36253916..36253918, -
7.14e-26FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr5:124468141..124468176, -
7.14e-26FFCP PHASE2:Hg19::chr12:56848437..56848442,-#_d394e44e71c606f8fbe367682d8ee9d4p1@MIP
7.14e-26FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_d394e44e71c606f8fbe367682d8ee9d4p30@PDP1
7.14e-26FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr13:44875179..44875188, -
7.14e-26FFCP PHASE2:Hg19::chr11:65361417..65361421,-#_d394e44e71c606f8fbe367682d8ee9d4p2@KCNK7
7.14e-26FFCP PHASE1:Hg19::chr21:44592788..44592807,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr21:44592788..44592807, +
7.14e-26FFCP PHASE1:Hg19::chr2:10538258..10538282,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:10538258..10538282, +
7.14e-26FFCP PHASE1:Hg19::chr1:86064794..86064797,+#_d394e44e71c606f8fbe367682d8ee9d4p1@ENST00000426794
7.14e-26FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_d394e44e71c606f8fbe367682d8ee9d4p1@MIP
7.14e-26FFCP PHASE1:Hg19::chr13:44875179..44875188,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr13:44875179..44875188, -
7.14e-26FFCP PHASE1:Hg19::chr5:45038620..45038622,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr5:45038620..45038622, +
7.14e-26FFCP PHASE2:Hg19::chr3:156322310..156322314,-#_d394e44e71c606f8fbe367682d8ee9d4p@chr3:156322310..156322314, -
7.14e-26FFCP PHASE2:Hg19::chr19:41727698..41727705,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr19:41727698..41727705, +
7.14e-26FFCP PHASE2:Hg19::chr7:123198284..123198329,-#_d394e44e71c606f8fbe367682d8ee9d4p3@NDUFA5
7.14e-26FFCP PHASE2:Hg19::chr21:44592626..44592635,-#_d394e44e71c606f8fbe367682d8ee9d4p5@CU686889
7.14e-26FFCP PHASE2:Hg19::chr16:17563573..17563582,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr16:17563573..17563582, +
7.14e-26FFCP PHASE1:Hg19::chr2:693025..693036,+#_d394e44e71c606f8fbe367682d8ee9d4p@chr2:693025..693036, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000965&oldid=3277151"