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{{UBERON
{{UBERON
|id=UBERON:0001285
|alt_id=UBERON:FMA_17640-MA_0000375-XAO_0000145
|name=nephron
|namespace=
|def="The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron]
|xref=BTO:0000924;;EMAPA:28491;;EV:0100384;;FMA:17640;;GAID:428;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png;;MA:0000375;;MESH:A.05.810.453.736;;ncithesaurus:Nephron;;SCTID:361337001;;ZFA:0005282
|is_a=UBERON:0000064;;UBERON:0004120;;UBERON:0006554
|synonym="mature nephron" NARROW [EMAPA:28491]
|comment=Editor note: kidney terms require review for cross-vertebrate compatibility and developmental relationships. Taxon notes: In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)[GO Kidney]
|comment=Editor note: kidney terms require review for cross-vertebrate compatibility and developmental relationships. Taxon notes: In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)[GO Kidney]
|alt_id=UBERON:FMA_17640-MA_0000375-XAO_0000145
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003220;;UBERON:0004208
|develops_from=UBERON:0004208
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001285
|is_a=UBERON:0000064 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|name=nephron
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0007684
|part_of=UBERON:0007684
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Functional unit of the kidney that filters waste.[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="mature nephron" NARROW [EMAPA:28491];;"nephroneum" RELATED LATIN [Wikipedia:Nephron];;"tubulus renalis" RELATED LATIN [Wikipedia:Nephron]
|union_of=
|xref=BTO:0000924;;EMAPA:28491;;EV:0100384;;FMA:17640;;GAID:428;;http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png;;MA:0000375;;MESH:A.05.810.453.736;;ncithesaurus:Nephron;;SCTID:361337001;;TAO:0002153;;ZFA:0005282
}}
}}

Latest revision as of 17:17, 12 September 2014

Name:nephron
Namespace:FANTOM
Definition:"The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron]
Xrefs:
links:

BTO:0000924
EMAPA:28491
EV:0100384
FMA:17640
GAID:428
[ Gray1128.png Gray1128.png]
[ 200px-Gray1128.png 200px-Gray1128.png]
MA:0000375
MESH:A.05.810.453.736
ncithesaurus:Nephron
SCTID:361337001
TAO:0002153

ZFA:0005282
Synonyms: "mature nephron" NARROW [EMAPA:28491]
"nephroneum" RELATED LATIN [Wikipedia:Nephron]
"tubulus renalis" RELATED LATIN [Wikipedia:Nephron]
Comments:Editor note: kidney terms require review for cross-vertebrate compatibility and developmental relationships. Taxon notes: In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)[GO Kidney]
Alt_id: UBERON:FMA_17640-MA_0000375-XAO_0000145
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0006554(urinary system structure)
develops_from:UBERON:0004208(nephrogenic mesenchyme)
part_of:UBERON:0007684(uriniferous tubule)



Children

part of:UBERON:0001229 (renal corpuscle),UBERON:0001231 (nephron tubule),UBERON:0004198 (comma-shaped body),UBERON:0004211 (nephron epithelium),CL:1000449 (epithelial cell of nephron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001285 (nephron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.05e-87FFCP PHASE2:Hg19::chr2:693380..693398,+#_91104e4ca3c3d7c7102b42bb878e8259p@chr2:693380..693398, +
1.05e-87FFCP PHASE1:Hg19::chr2:693380..693398,+#_91104e4ca3c3d7c7102b42bb878e8259p@chr2:693380..693398, +
1.72e-83FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_b5b2e2d2fb57d3054ba5aced5e02e4bdp4@MEGF11
1.72e-83FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_b5b2e2d2fb57d3054ba5aced5e02e4bdp4@MEGF11
2.2e-74FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_99d8a9510e3c52d550fc3ec3dda3fc74p7@HOXA10
2.2e-74FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_99d8a9510e3c52d550fc3ec3dda3fc74p7@HOXA10
7.63e-66FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_ec75065b9a1434123363139731bf31b1p@chr1:1100457..1100470, +
7.63e-66FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_ec75065b9a1434123363139731bf31b1p@chr1:1100457..1100470, +
6.44e-62FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_624776bde443b07dccdabcf31960a843p4@PAX2
6.44e-62FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_624776bde443b07dccdabcf31960a843p4@PAX2
5.84e-60FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_9c72f02497cbbd6ae26f7d241132bc4ep@chr18:3456189..3456200, +
5.84e-60FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_9c72f02497cbbd6ae26f7d241132bc4ep@chr18:3456189..3456200, +
6.18e-60FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_9a25380f7e1ac6d31f65143f0648766ep3@PAX2
6.18e-60FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_9a25380f7e1ac6d31f65143f0648766ep3@PAX2
4.45e-59FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_45491facab4bf489cb14238358ec4e03p6@LRRN4
4.45e-59FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_45491facab4bf489cb14238358ec4e03p6@LRRN4
3.49e-58FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_6a3691bd9eb6b529ab35c4148982995dp@chr5:74244100..74244117, +
3.49e-58FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_6a3691bd9eb6b529ab35c4148982995dp@chr5:74244100..74244117, +
3.91e-56FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_1758b8e6cb4065fcd05f19814237d389p2@AB527789
3.91e-56FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_1758b8e6cb4065fcd05f19814237d389p2@AB527789
3.83e-55FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_48660965d078edd38a9902276d182ccdp@chr16:86604624..86604648, +
3.83e-55FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_48660965d078edd38a9902276d182ccdp@chr16:86604624..86604648, +
3.51e-54FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_70be711f5fe544aaf2b7f3a7a143ae25p@chr16:86768403..86768437, +
3.51e-54FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_70be711f5fe544aaf2b7f3a7a143ae25p@chr16:86768403..86768437, +
6.09e-53FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_194ce24f9849aff0659bee8bdb323a6fp2@CLDN6
6.09e-53FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_194ce24f9849aff0659bee8bdb323a6fp2@CLDN6
2.79e-52FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_616ee0cf2b83aaa29e9fcf55ae0305fcp1@ENST00000418041, p1@ENST00000443104
2.79e-52FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_616ee0cf2b83aaa29e9fcf55ae0305fcp1@ENST00000418041, p1@ENST00000443104
1.61e-50FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_d408aa45c44538d49e6641054066da8ep@chr7:7606139..7606151, -
1.61e-50FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_d408aa45c44538d49e6641054066da8ep@chr7:7606139..7606151, -
1.96e-50FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_4ba3a7b979c4c14dc438923985afda62p3@HNF1B
1.96e-50FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_4ba3a7b979c4c14dc438923985afda62p3@HNF1B
1.73e-49FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_0fb2a0d97c5d520c64b28446da1e8c90p@chr7:140227349..140227360, -
1.73e-49FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_0fb2a0d97c5d520c64b28446da1e8c90p@chr7:140227349..140227360, -
2.61e-49FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_ebb10eedbd44005f4270b7f00fa1b612p16@HOXA10
2.61e-49FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_ebb10eedbd44005f4270b7f00fa1b612p16@HOXA10
3.13e-49FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_fdfda826e487832658ee53c541205b2ep2@B3GALT5
3.13e-49FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_fdfda826e487832658ee53c541205b2ep2@B3GALT5
4.07e-49FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_e9ed3a58bf3bbe1890b3a8df9d595415p4@AIF1L
4.07e-49FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_e9ed3a58bf3bbe1890b3a8df9d595415p4@AIF1L
1.12e-47FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_fb7b451c69dbbd9d981637b3afd98694p@chr7:140227303..140227330, -
1.12e-47FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_fb7b451c69dbbd9d981637b3afd98694p@chr7:140227303..140227330, -
1.23e-44FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_666bc6014b1f1800ae865b404fea5de4p3@LRRN4
1.23e-44FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_666bc6014b1f1800ae865b404fea5de4p3@LRRN4
3.62e-44FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_0b849ea9dbfa06a4601fdc12a7213061p@chr21:46826248..46826282, -
3.62e-44FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_0b849ea9dbfa06a4601fdc12a7213061p@chr21:46826248..46826282, -
3.06e-43FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_1aaad7fbbe84449be0ad9d5edd34b2b6p2@LRRN4
3.06e-43FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_1aaad7fbbe84449be0ad9d5edd34b2b6p2@LRRN4
1.81e-42FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_f88ad95377422916f6645354940a7ee9p@chr15:85403302..85403304, +
1.81e-42FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_f88ad95377422916f6645354940a7ee9p@chr15:85403302..85403304, +
1.82e-42FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_425e0ce939b3123aed923eae0543b164p@chr7:98453821..98453843, -
1.82e-42FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_425e0ce939b3123aed923eae0543b164p@chr7:98453821..98453843, -
2.77e-42FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_ae3bf0415ac0ebb2205545db74a148ecp7@LRRN4
2.77e-42FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_ae3bf0415ac0ebb2205545db74a148ecp7@LRRN4
7.5e-42FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_030f440f61bf2409587e4858f869b3e5p2@PAX2
7.5e-42FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_030f440f61bf2409587e4858f869b3e5p2@PAX2
3.59e-41FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_84f22180c856e003aa3ebb0f69a79b9dp16@TJP2
3.59e-41FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_84f22180c856e003aa3ebb0f69a79b9dp16@TJP2
9.39e-41FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_2b21f5cda511ef37bf676dc67fba6bdep1@ENST00000413103
9.39e-41FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_2b21f5cda511ef37bf676dc67fba6bdep1@ENST00000413103
1.7e-40FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_ad22dbc1b161a6eaaee07b070f8bc1dbp5@LRRN4
1.7e-40FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_ad22dbc1b161a6eaaee07b070f8bc1dbp5@LRRN4
2.9e-40FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_b5dabb8f1e78852f0ae4659568a975b1p2@PLA2G2F
2.9e-40FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_b5dabb8f1e78852f0ae4659568a975b1p2@PLA2G2F
8.58e-40FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_5bea74bba07f8d3313a4e58c7176b667p3@AIF1L
8.58e-40FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_5bea74bba07f8d3313a4e58c7176b667p3@AIF1L
1.21e-39FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_6c4c1ae95bb76c00a74561c622527606p6@GALNT14
1.21e-39FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_6c4c1ae95bb76c00a74561c622527606p6@GALNT14
3.08e-39FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_74baf68b82f5fbb44ba981f1902f76f5p4@AB527789
3.08e-39FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_74baf68b82f5fbb44ba981f1902f76f5p4@AB527789
7.42e-37FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_55911a188929b8f82843f5918a0647c8p4@DCDC2
7.42e-37FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_55911a188929b8f82843f5918a0647c8p4@DCDC2
1.29e-36FFCP PHASE2:Hg19::chr2:693362..693373,+#_cb113613717e4a87079ce2ce830c8bb9p@chr2:693362..693373, +
1.29e-36FFCP PHASE1:Hg19::chr2:693362..693373,+#_cb113613717e4a87079ce2ce830c8bb9p@chr2:693362..693373, +
1.36e-36FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_191e41fade9304f8be80092ae9e5ab1cp1@HOXD4
1.36e-36FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_191e41fade9304f8be80092ae9e5ab1cp1@HOXD4
6.21e-36FFCP PHASE2:Hg19::chr2:176982078..176982095,+#_f46120476a9c3386d5abd854f4370a39p@chr2:176982078..176982095, +
6.21e-36FFCP PHASE1:Hg19::chr2:176982078..176982095,+#_f46120476a9c3386d5abd854f4370a39p@chr2:176982078..176982095, +
2.64e-35FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_8065f0e90b4dbf0e25e4965554ba3f4ep1@AB527789
2.64e-35FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_8065f0e90b4dbf0e25e4965554ba3f4ep1@AB527789
3.85e-35FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_32ffc6addc91f50be904ed482fd3e750p3@SULT1C4
3.85e-35FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_32ffc6addc91f50be904ed482fd3e750p3@SULT1C4
8.14e-35FFCP PHASE2:Hg19::chr18:43405633..43405645,+#_92c54e20fa936d6063019d6f002f6d38p4@SIGLEC15
8.14e-35FFCP PHASE1:Hg19::chr18:43405633..43405645,+#_92c54e20fa936d6063019d6f002f6d38p4@SIGLEC15
1.65e-34FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_4bf2837b8e2dec77bd2d0e39f5edd13bp1@ENST00000444849
1.65e-34FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_4bf2837b8e2dec77bd2d0e39f5edd13bp1@ENST00000444849
1.14e-33FFCP PHASE2:Hg19::chr17:171147..171161,+#_230e2f36ce9ced67c18cc1ee7cce272dp@chr17:171147..171161, +
1.14e-33FFCP PHASE1:Hg19::chr17:171147..171161,+#_230e2f36ce9ced67c18cc1ee7cce272dp@chr17:171147..171161, +
1.52e-33FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_7c5d85da28bec35a4b698f368a8920c0p2@C14orf105
1.52e-33FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_7c5d85da28bec35a4b698f368a8920c0p2@C14orf105
1.8e-33FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_85222359e6f791afd7571f9f7d5a0098p5@GALNT14
1.8e-33FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_85222359e6f791afd7571f9f7d5a0098p5@GALNT14
2.35e-33FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_c1686d335efd237ddc23983cbe7e3484p1@CLDN16
2.35e-33FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_c1686d335efd237ddc23983cbe7e3484p1@CLDN16
4.12e-33FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_494d6a8330b9b205293381207d162a49p@chr17:36065029..36065045, -
4.12e-33FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_494d6a8330b9b205293381207d162a49p@chr17:36065029..36065045, -
8.12e-33FFCP PHASE2:Hg19::chr17:35293950..35293973,-#_7b02b5fedfb37b3da37f1061180822a5p1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
8.12e-33FFCP PHASE1:Hg19::chr17:35293950..35293973,-#_7b02b5fedfb37b3da37f1061180822a5p1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
1.25e-32FFCP PHASE1:Hg19::chr22:30653574..30653606,-#_ce4bbb0660fc3579ee75a41e739a08ebp@chr22:30653574..30653606, -
1.25e-32FFCP PHASE2:Hg19::chr22:30653574..30653606,-#_ce4bbb0660fc3579ee75a41e739a08ebp@chr22:30653574..30653606, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Functional unit of the kidney that filters waste.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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