UBERON:0006554
From FANTOM5_SSTAR
Name: | urinary system structure | |
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Namespace: | FANTOM | |
Xrefs: |
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Comments: | editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000061(anatomical structure) |
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part_of: | UBERON:0001008(renal system) |
Children
is a: | UBERON:0000057 (urethra),UBERON:0000074 (renal glomerulus),UBERON:0000163 (embryonic cloaca),UBERON:0000365 (urothelium),UBERON:0001225 (cortex of kidney),UBERON:0001229 (renal corpuscle),UBERON:0001230 (glomerular capsule),UBERON:0001255 (urinary bladder),UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),UBERON:0001285 (nephron),UBERON:0001556 (lower urinary tract),UBERON:0002113 (kidney),UBERON:0002303 (juxtaglomerular apparatus),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0005749 (glomerular tuft),UBERON:0006555 (excretory tube),UBERON:0008987 (renal parenchyma),UBERON:0009846 (embryonic cloacal epithelium),UBERON:0011143 (upper urinary tract) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10290-104G2
- 10291-104G3
- 10318-105A3
- 10319-105A4 (Urethra, donor2)
- 10346-105D4
- 10347-105D5
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10290-104G2
- 10291-104G3
- 10318-105A3
- 10319-105A4 (Urethra, donor2)
- 10346-105D4
- 10347-105D5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006554 (urinary system structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data