UBERON:0005178: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005178
|name=thoracic cavity organ
|namespace=
|def="An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic]
|xref=MA:0000557
|is_a=UBE...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005178 | |||
|is_a=UBERON:0005181 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON: | |name=thoracic cavity element | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000915 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref=MA:0000557 | |||
}} | }} | ||
Latest revision as of 17:51, 12 September 2014
| Name: | thoracic cavity element | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005181(thoracic segment organ) |
|---|---|
| part_of: | UBERON:0000915(thoracic segment of trunk) |
Children
| is a: | UBERON:0001043 (esophagus),UBERON:0002048 (lung),UBERON:0015410 (heart plus pericardium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005178 (thoracic cavity element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.21e-66 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_585326792238823ce23970dfe208dd45 | p4@Tbx4 |
| 1.21e-66 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_585326792238823ce23970dfe208dd45 | p4@Tbx4 |
| 4.71e-66 | FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_afa496f0dd9d95608deef399664bf279 | p@chr9:20829911..20829920, + |
| 4.71e-66 | FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_afa496f0dd9d95608deef399664bf279 | p@chr9:20829911..20829920, + |
| 1.06e-62 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_466f4911e9218d668842f5baa164d513 | p1@ENSMUST00000134305 |
| 1.06e-62 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_466f4911e9218d668842f5baa164d513 | p1@ENSMUST00000134305 |
| 1.52e-61 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_50e257dd87a7e5f406551b3a17d440c6 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.52e-61 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_50e257dd87a7e5f406551b3a17d440c6 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.91e-61 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_f35bedb92005b3623e8e6cdf3c0ecd0f | p6@Tbx4 |
| 1.91e-61 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_f35bedb92005b3623e8e6cdf3c0ecd0f | p6@Tbx4 |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_89547e94dfeb4d477547901735fb012c | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_89547e94dfeb4d477547901735fb012c | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_89547e94dfeb4d477547901735fb012c | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_89547e94dfeb4d477547901735fb012c | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_89547e94dfeb4d477547901735fb012c | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_89547e94dfeb4d477547901735fb012c | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_89547e94dfeb4d477547901735fb012c | p@chr11:59457994..59457997, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_89547e94dfeb4d477547901735fb012c | p@chr11:59457994..59457997, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_89547e94dfeb4d477547901735fb012c | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_89547e94dfeb4d477547901735fb012c | p@chr4:138812977..138812992, + |
| 1.35e-60 | FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_c8d98e77ddcaab248167698e8c8c5c29 | p9@Nav2 |
| 1.35e-60 | FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_c8d98e77ddcaab248167698e8c8c5c29 | p9@Nav2 |
| 2.87e-58 | FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_b1e29c3dd0402f00bd5386f4fb3ca30d | p@chr12:57633887..57633899, - |
| 2.87e-58 | FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_b1e29c3dd0402f00bd5386f4fb3ca30d | p@chr12:57633887..57633899, - |
| 1.23e-57 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_78caf7f929dde3c04bd793d907190e33 | p8@Nkx2-1 |
| 1.23e-57 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_78caf7f929dde3c04bd793d907190e33 | p8@Nkx2-1 |
| 1.37e-57 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_afd95a109283311bb1f715d4789dac01 | p2@E030019B13Rik |
| 1.37e-57 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_afd95a109283311bb1f715d4789dac01 | p2@E030019B13Rik |
| 1.53e-57 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_73151150899808861728ec3027cb4d6b | p10@Nebl |
| 1.53e-57 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_73151150899808861728ec3027cb4d6b | p10@Nebl |
| 1.7e-57 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_78ebd3d0b3969ac102a894853525ab90 | p9@Nkx2-1 |
| 1.7e-57 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_78ebd3d0b3969ac102a894853525ab90 | p9@Nkx2-1 |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_b14eb74140e3d47c6c65344ec43c8fff | p@chr12:57598537..57598547, - |
| 1.79e-56 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_b14eb74140e3d47c6c65344ec43c8fff | p3@Trpm6 |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_b14eb74140e3d47c6c65344ec43c8fff | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_b14eb74140e3d47c6c65344ec43c8fff | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_b14eb74140e3d47c6c65344ec43c8fff | p3@Trpm6 |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_b14eb74140e3d47c6c65344ec43c8fff | p@chr12:57598537..57598547, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_6b58f7085e2dc83ff883b617958eef67 | p@chr12:57636278..57636289, + |
| 2.01e-56 | FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_6b58f7085e2dc83ff883b617958eef67 | p@chr12:57636278..57636289, + |
| 2.01e-56 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_6b58f7085e2dc83ff883b617958eef67 | p@chr14:115241755..115241762, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_6b58f7085e2dc83ff883b617958eef67 | p@chr14:115241755..115241762, - |
| 2.24e-56 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_80bfff046b644d6e6543116b4e08af81 | p@chr4:138812999..138813015, + |
| 2.24e-56 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_80bfff046b644d6e6543116b4e08af81 | p@chr4:138812999..138813015, + |
| 3.93e-56 | FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_4840e15648580d88b7e93c60b76224a1 | p7@Il18r1 |
| 3.93e-56 | FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_4840e15648580d88b7e93c60b76224a1 | p7@Il18r1 |
| 6.2e-56 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_b17cee66112d2b8d10968e09f8ae8b2e | p3@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr14:70922576..70922589, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_b17cee66112d2b8d10968e09f8ae8b2e | p3@Sftpb |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr14:70921265..70921285, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_b17cee66112d2b8d10968e09f8ae8b2e | p4@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr14:70922576..70922589, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_b17cee66112d2b8d10968e09f8ae8b2e | p4@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_b17cee66112d2b8d10968e09f8ae8b2e | p@chr14:70921265..70921285, - |
| 9.42e-56 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_f0a7173dc23f35a02d811e38d6c04dcc | p@chr5:120282691..120282701, + |
| 9.42e-56 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_f0a7173dc23f35a02d811e38d6c04dcc | p@chr5:120282691..120282701, + |
| 1.34e-54 | FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_075ed7c4fccbc067a3c69b720bc2e35f | p@chr12:57636911..57636924, - |
| 1.34e-54 | FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_075ed7c4fccbc067a3c69b720bc2e35f | p@chr12:57636911..57636924, - |
| 3.97e-54 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_4eb653545d74ae3d83d3ca2bc5f756ee | p4@E030019B13Rik |
| 3.97e-54 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_4eb653545d74ae3d83d3ca2bc5f756ee | p4@E030019B13Rik |
| 1.46e-52 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_ba42fb3e15fb1ccb5c55da0f7f551f81 | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_ba42fb3e15fb1ccb5c55da0f7f551f81 | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_ba42fb3e15fb1ccb5c55da0f7f551f81 | p@chr12:57623172..57623185, - |
| 1.46e-52 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_ba42fb3e15fb1ccb5c55da0f7f551f81 | p@chr12:57623172..57623185, - |
| 1.62e-52 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_5d60c8667e446904a4b51854415a8764 | p@chr5:28785436..28785450, - |
| 1.62e-52 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_5d60c8667e446904a4b51854415a8764 | p@chr5:28785436..28785450, - |
| 1.8e-52 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_5b2089dc69e7d0ac127ac28df1b9aaf7 | p@chr14:70922459..70922482, - |
| 1.8e-52 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_5b2089dc69e7d0ac127ac28df1b9aaf7 | p@chr14:70922459..70922482, - |
| 5.65e-52 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_cbbd677e58fe9fdb34c462fc5d35fd55 | p4@Etv5 |
| 5.65e-52 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_cbbd677e58fe9fdb34c462fc5d35fd55 | p4@Etv5 |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_8dfce4c2a2baf3e7eba0ab4f09a7757b | p@chr6:72264890..72264911, + |
| 2.21e-51 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_6f609332420f5955d079678d87936319 | p@chr6:72264609..72264653, - |
| 2.21e-51 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_6f609332420f5955d079678d87936319 | p@chr6:72264609..72264653, - |
| 2.47e-51 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_6d39546287541895299390c4dd0b6ee7 | p@chr6:129378567..129378573, - |
| 2.47e-51 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_6d39546287541895299390c4dd0b6ee7 | p@chr6:129378567..129378573, - |
| 3.74e-51 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_74ee307755eedf9b0c56e8a42da528a6 | p16@Pde5a |
| 3.74e-51 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_74ee307755eedf9b0c56e8a42da528a6 | p16@Pde5a |
| 5.44e-51 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_bcd6b22f19cd98dc3e3a738d106feb68 | p7@Nkx2-1 |
| 5.44e-51 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_bcd6b22f19cd98dc3e3a738d106feb68 | p7@Nkx2-1 |
