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{{UBERON
{{UBERON
|id=UBERON:0005181
|alt_id=
|name=thoracic segment organ
|namespace=
|def=
|xref=MA:0000563
|is_a=UBERON:0005177
|synonym="upper body organ" RELATED [MA:0000563]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005181
|is_a=UBERON:0005177
|is_obsolete=
|located_in=
|located_in=
|name=thoracic segment organ
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000915
|part_of=UBERON:0000915
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="upper body organ" RELATED [MA:0000563]
|union_of=
|xref=MA:0000563
}}
}}

Latest revision as of 17:51, 12 September 2014

Name:thoracic segment organ
Namespace:FANTOM
Xrefs:
links:
MA:0000563
Synonyms: "upper body organ" RELATED [MA:0000563]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005177(trunk region element)
part_of:UBERON:0000915(thoracic segment of trunk)



Children

is a:UBERON:0000948 (heart),UBERON:0001103 (diaphragm),UBERON:0003830 (thoracic segment muscle),UBERON:0005175 (chest organ),UBERON:0005178 (thoracic cavity element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005181 (thoracic segment organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.21e-66FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_4e1bef4ae1b2f454560a0ca25b16ba83p4@Tbx4
1.21e-66FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_4e1bef4ae1b2f454560a0ca25b16ba83p4@Tbx4
4.71e-66FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_0bfc5fab404c9c5caa5fe20943753f04p@chr9:20829911..20829920, +
4.71e-66FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_0bfc5fab404c9c5caa5fe20943753f04p@chr9:20829911..20829920, +
1.06e-62FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_2b82c9add331232314c0ae9c1c1b15c8p1@ENSMUST00000134305
1.06e-62FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_2b82c9add331232314c0ae9c1c1b15c8p1@ENSMUST00000134305
1.52e-61FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_9d83db7942f101c424606d38ddf4541bp1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.52e-61FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_9d83db7942f101c424606d38ddf4541bp1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.91e-61FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_54e8413390cb91864a299d7441b96a24p6@Tbx4
1.91e-61FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_54e8413390cb91864a299d7441b96a24p6@Tbx4
5.56e-61FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_35cf7f8751b03a64e912e4d455b8682ep@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_35cf7f8751b03a64e912e4d455b8682ep@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_35cf7f8751b03a64e912e4d455b8682ep@chr4:138812977..138812992, +
5.56e-61FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_35cf7f8751b03a64e912e4d455b8682ep@chr8:94878479..94878503, -
5.56e-61FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_35cf7f8751b03a64e912e4d455b8682ep@chr4:138812977..138812992, +
5.56e-61FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_35cf7f8751b03a64e912e4d455b8682ep@chr8:94878479..94878503, -
5.56e-61FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_35cf7f8751b03a64e912e4d455b8682ep@chr12:57636003..57636017, -
5.56e-61FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_35cf7f8751b03a64e912e4d455b8682ep@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_35cf7f8751b03a64e912e4d455b8682ep@chr12:57598716..57598720, -
5.56e-61FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_35cf7f8751b03a64e912e4d455b8682ep@chr11:59457994..59457997, -
1.35e-60FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_f4769f39a5ad703f940815e72743468ap9@Nav2
1.35e-60FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_f4769f39a5ad703f940815e72743468ap9@Nav2
2.87e-58FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_771c9473274abb7d8eaac98b57efdd96p@chr12:57633887..57633899, -
2.87e-58FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_771c9473274abb7d8eaac98b57efdd96p@chr12:57633887..57633899, -
1.23e-57FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_2362df89548a3d6f46b77e8aac4361b9p8@Nkx2-1
1.23e-57FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_2362df89548a3d6f46b77e8aac4361b9p8@Nkx2-1
1.37e-57FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_17273352d12a1bdf75235acd77fa05a0p2@E030019B13Rik
1.37e-57FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_17273352d12a1bdf75235acd77fa05a0p2@E030019B13Rik
1.53e-57FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_88a18127a11a6c2fcbe6d046248675a3p10@Nebl
1.53e-57FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_88a18127a11a6c2fcbe6d046248675a3p10@Nebl
1.7e-57FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_fdf767189e63912a45c46a3c7fe4f969p9@Nkx2-1
1.7e-57FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_fdf767189e63912a45c46a3c7fe4f969p9@Nkx2-1
1.79e-56FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_7b4164ab870591aa36788954b560b073p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_7b4164ab870591aa36788954b560b073p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_7b4164ab870591aa36788954b560b073p3@E030019B13Rik
1.79e-56FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_7b4164ab870591aa36788954b560b073p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_7b4164ab870591aa36788954b560b073p3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_7b4164ab870591aa36788954b560b073p@chr12:57598537..57598547, -
2.01e-56FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_021933f4d07ee6194439749d66105c8cp@chr12:57636278..57636289, +
2.01e-56FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_021933f4d07ee6194439749d66105c8cp@chr14:115241755..115241762, -
2.01e-56FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_021933f4d07ee6194439749d66105c8cp@chr12:57636278..57636289, +
2.01e-56FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_021933f4d07ee6194439749d66105c8cp@chr14:115241755..115241762, -
2.24e-56FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_61405b3fb0127db03ed5b001b405047ap@chr4:138812999..138813015, +
2.24e-56FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_61405b3fb0127db03ed5b001b405047ap@chr4:138812999..138813015, +
3.93e-56FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_7cbaebeb98f070759f26e2473759a6d4p7@Il18r1
3.93e-56FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_7cbaebeb98f070759f26e2473759a6d4p7@Il18r1
6.2e-56FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_6ba98f685d377d510e8d1f5f7deaba70p@chr1:184610062..184610074, +
6.2e-56FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_6ba98f685d377d510e8d1f5f7deaba70p@chr2:164374820..164374835, -
6.2e-56FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_6ba98f685d377d510e8d1f5f7deaba70p@chr14:70922576..70922589, -
6.2e-56FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_6ba98f685d377d510e8d1f5f7deaba70p@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_6ba98f685d377d510e8d1f5f7deaba70p@chr14:70921265..70921285, -
6.2e-56FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_6ba98f685d377d510e8d1f5f7deaba70p@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_6ba98f685d377d510e8d1f5f7deaba70p@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_6ba98f685d377d510e8d1f5f7deaba70p3@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_6ba98f685d377d510e8d1f5f7deaba70p3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_6ba98f685d377d510e8d1f5f7deaba70p@chr2:164374820..164374835, -
6.2e-56FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_6ba98f685d377d510e8d1f5f7deaba70p4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_6ba98f685d377d510e8d1f5f7deaba70p4@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_6ba98f685d377d510e8d1f5f7deaba70p@chr2:66524237..66524246, -
6.2e-56FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_6ba98f685d377d510e8d1f5f7deaba70p@chr14:70921265..70921285, -
9.42e-56FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_19a8ee71a37d1c4526713aebb09b1609p@chr5:120282691..120282701, +
9.42e-56FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_19a8ee71a37d1c4526713aebb09b1609p@chr5:120282691..120282701, +
1.34e-54FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_f09c9d9b97bdd551158b9cdfdf3bb3b5p@chr12:57636911..57636924, -
1.34e-54FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_f09c9d9b97bdd551158b9cdfdf3bb3b5p@chr12:57636911..57636924, -
3.97e-54FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_386b14ec90eda89f9355f7555f99eaabp4@E030019B13Rik
3.97e-54FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_386b14ec90eda89f9355f7555f99eaabp4@E030019B13Rik
1.46e-52FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_3f7a0c0387c0275bcf19f87c90aae015p@chr14:70922007..70922052, +
1.46e-52FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_3f7a0c0387c0275bcf19f87c90aae015p@chr12:57623172..57623185, -
1.46e-52FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_3f7a0c0387c0275bcf19f87c90aae015p@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_3f7a0c0387c0275bcf19f87c90aae015p@chr12:57623172..57623185, -
1.62e-52FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_2c0a399873ad12480828fa0f93395398p@chr5:28785436..28785450, -
1.62e-52FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_2c0a399873ad12480828fa0f93395398p@chr5:28785436..28785450, -
1.8e-52FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_12d2597a5ef215e1f0af2b18a9821296p@chr14:70922459..70922482, -
1.8e-52FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_12d2597a5ef215e1f0af2b18a9821296p@chr14:70922459..70922482, -
5.65e-52FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_64996d9422471b4c57a5ac3dfdd2035bp4@Etv5
5.65e-52FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_64996d9422471b4c57a5ac3dfdd2035bp4@Etv5
1.97e-51FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_14dce0b9ea4a0541952e9d0d8eb614ebp4@Lamp3
1.97e-51FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr14:70922486..70922510, -
1.97e-51FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr12:57376690..57376716, -
1.97e-51FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr6:72263977..72263993, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr6:72264890..72264911, +
1.97e-51FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr6:72264418..72264441, +
1.97e-51FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr14:70923240..70923251, -
1.97e-51FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_14dce0b9ea4a0541952e9d0d8eb614ebp4@Lamp3
1.97e-51FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr14:70922486..70922510, -
1.97e-51FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_14dce0b9ea4a0541952e9d0d8eb614ebp@chr6:72263977..72263993, +
2.21e-51FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_1ac9caa72f38e9ed46902b7273977ecdp@chr6:72264609..72264653, -
2.21e-51FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_1ac9caa72f38e9ed46902b7273977ecdp@chr6:72264609..72264653, -
2.47e-51FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_de294655de0b5b8e75306ea813385cf8p@chr6:129378567..129378573, -
2.47e-51FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_de294655de0b5b8e75306ea813385cf8p@chr6:129378567..129378573, -
3.74e-51FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_4c16150a92cc628817a1372b7f8c8d67p16@Pde5a
3.74e-51FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_4c16150a92cc628817a1372b7f8c8d67p16@Pde5a
5.44e-51FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_a9bff01945f9a715e466ed506cab304cp7@Nkx2-1
5.44e-51FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_a9bff01945f9a715e466ed506cab304cp7@Nkx2-1

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