FF:475-3I5: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004691 | ||
|accession_numbers=CAGE;DRX009149;DRR010023;DRZ001448;DRZ002831;DRZ012798;DRZ014181 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
| | |||
| | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000300,FF:0011365 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr6:55631042..55631102,-!p1@Neurod6!1.66!44.72!Neurod6;;chr12:34642510..34642530,+!p1@Twist1!1.54!104.17!Twist1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.48!36.97!Pou3f3;;chr11:98190918..98190951,-!p1@Neurod2!1.48!29.48!Neurod2;;chr1:136186574..136186592,+!p1@Myog!1.47!28.48!Myog;;chr11:94981424..94981439,+!p1@Dlx3!1.44!30.23!Dlx3;;chr16:91270004..91270023,+!p1@Olig1!1.43!29.73!Olig1;;chr17:48015839..48015915,-!p3@Foxp4!1.41!28.98!Foxp4;;chr12:30213247..30213333,+!p1@Myt1l!1.39!23.73!Myt1l;;chr11:121380640..121380655,-!p1@Zfp750!1.38!37.22!Zfp750;;chr3:95032091..95032183,-!p1@Mllt11!1.33!168.12!Mllt11;;chr1:179374784..179374800,+!p2@Zfp238!1.33!23.73!Zfp238;;chr2:79296783..79296801,-!p1@Neurod1!1.31!19.24!Neurod1;;chr9:91260594..91260612,-!p1@Zic1!1.30!18.74!Zic1;;chr5:77543897..77543911,-!p2@Hopx!1.28!33.97!Hopx;;chr3:99057269..99057306,+!p1@Tbx15!1.28!21.73!Tbx15;;chr6:6832076..6832092,-!p1@Dlx5!1.27!20.73!Dlx5;;chr12:74147689..74147711,-!p1@Six1!1.26!37.22!Six1;;chr7:116154364..116154444,+!p1@Tub!1.26!29.48!Tub;;chr2:71384802..71384815,-!p1@Dlx2!1.26!20.98!Dlx2;;chr9:31720843..31720888,-!p1@Barx2!1.25!18.49!Barx2;;chr12:28027561..28027591,-!p1@Sox11!1.24!104.42!Sox11;;chr13:72766250..72766273,+!p1@Irx2!1.24!25.48!Irx2;;chr19:5560600..5560617,-!p1@Ovol1!1.24!19.74!Ovol1;;chr2:61642631..61642684,+!p1@Tbr1!1.24!16.24!Tbr1;;chr2:38206580..38206600,+!p2@Lhx2!1.22!19.49!Lhx2;;chr17:44951553..44951586,-!p2@Runx2!1.21!16.99!Runx2;;chr9:91260616..91260653,-!p2@Zic1!1.20!14.99!Zic1;;chr4:135129538..135129558,-!p1@Grhl3!1.19!21.73!Grhl3;;chr2:120365588..120365602,-!p2@Zfp106!1.18!23.73!Zfp106;;chr11:121380594..121380609,-!p2@Zfp750!1.17!23.98!Zfp750;;chr1:57028125..57028149,-!p2@Satb2!1.17!13.74!Satb2;;chr15:102197405..102197454,-!p1@Sp7!1.17!13.74!Sp7;;chr13:72766279..72766296,+!p2@Irx2!1.16!19.98!Irx2;;chr2:38206744..38206766,+!p1@Lhx2!1.16!16.24!Lhx2;;chr16:25801993..25802014,+!p1@Trp63!1.16!13.49!Trp63;;chr2:65683890..65683907,+!p1@Csrnp3!1.15!25.23!Csrnp3;;chr3:34548909..34548927,+!p1@Sox2!1.15!21.98!Sox2;;chr13:40829137..40829205,-!p1@Tfap2a!1.15!14.74!Tfap2a;;chr13:83643159..83643226,+!p3@Mef2c!1.15!13.24!Mef2c;;chr19:55969923..55969944,+!p6@Tcf7l2!1.15!13.24!Tcf7l2;;chrX:108009761..108009788,+!p1@Pou3f4!1.15!12.99!Pou3f4;;chrX:90531838..90531861,+!p1@Arx!1.14!16.24!Arx;;chr13:55932591..55932622,-!p1@Pitx1!1.14!15.49!Pitx1;;chr14:49287186..49287225,-!p1@Otx2!1.14!12.74!Otx2;;chr16:91225808..91225824,+!p1@Olig2!1.14!12.74!Olig2;;chr7:6649134..6649167,-!p1@Zim1!1.13!67.20!Zim1;;chr11:116196664..116196679,-!p1@Foxj1!1.13!19.24!Foxj1;;chr6:6831950..6831985,-!p2@Dlx5!1.13!13.74!Dlx5;;chr15:76352832..76352900,-!p1@Scrt1!1.12!12.24!Scrt1;;chr1:165243591..165243625,-!p2@Prrx1!1.08!16.74!Prrx1;;chr4:154335024..154335039,+!p1@Hes5!1.08!13.24!Hes5;;chr7:53631837..53631850,+!p1@Myod1!1.08!10.99!Myod1;;chr5:98609885..98609900,+!p1@Prdm8!1.07!10.74!Prdm8;;chr13:99124189..99124205,+!p1@Foxd1!1.06!16.24!Foxd1;;chr7:30088977..30089002,+!p2@Dpf1!1.06!14.74!Dpf1;;chr8:87297280..87297326,-!p2@Nfix!1.05!24.23!Nfix;;chr11:121380611..121380625,-!p3@Zfp750!1.05!12.49!Zfp750;;chr10:12810631..12810649,+!p1@Plagl1!1.03!256.06!Plagl1;;chr12:109242266..109242295,-!p1@Bcl11b!1.03!83.44!Bcl11b;;chr12:57796615..57796687,+!p1@Pax9!1.03!9.74!Pax9;;chr2:146047829..146047847,+!p1@Insm1!1.02!17.24!Insm1;;chr12:30219426..30219506,+!p2@Myt1l!1.02!9.49!Myt1l;;chr17:86087592..86087615,-!p1@Six2!1.02!9.49!Six2;;chr17:44951431..44951445,-!p3@Runx2!1.01!9.24!Runx2;;chr19:19185671..19185693,-!p1@Rorb!1.00!21.73!Rorb;;chr12:54349410..54349461,+!p1@Npas3!0.99!10.74!Npas3;;chr14:122874619..122874634,+!p1@Zic2!0.99!8.74!Zic2;;chr3:127336052..127336058,+!p1@Neurog2!0.98!8.49!Neurog2;;chr3:101814061..101814094,+!p1@Nhlh2!0.98!8.49!Nhlh2;;chr6:6831928..6831949,-!p3@Dlx5!0.98!8.49!Dlx5;;chr1:140739014..140739032,-!p1@Lhx9!0.97!10.74!Lhx9;;chr8:12395603..12395621,+!p1@Sox1!0.97!8.24!Sox1;;chr10:106931775..106931798,-!p1@Myf6!0.97!8.24!Myf6;;chr17:25707623..25707639,-!p1@Sox8!0.96!35.72!Sox8;;chr10:44178521..44178557,-!p1@Prdm1!0.96!14.74!Prdm1;;chr7:17647736..17647772,-!p1@Hif3a!0.95!28.73!Hif3a;;chr13:72101178..72101203,-!p1@Irx1!0.95!12.49!Irx1;;chr4:124334894..124334899,+!p1@Pou3f1!0.95!10.49!Pou3f1;;chr2:172375081..172375105,+!p1@Tfap2c!0.95!7.99!Tfap2c;;chr5:38215819..38215823,-!p1@Msx1!0.94!20.73!Msx1;;chr15:35225845..35225867,+!p1@Osr2!0.94!19.74!Osr2;;chr6:70906450..70906454,+!p1@Foxi3!0.94!7.74!Foxi3;;chr4:46356509..46356527,+!p1@Foxe1!0.94!7.74!Foxe1;;chr2:103143336..103143367,-!p1@Ehf!0.93!12.49!Ehf;;chrX:58146612..58146615,-!p1@Sox3!0.93!7.49!Sox3;;chr10:126778916..126778974,-!p1@Gli1!0.92!16.74!Gli1;;chr10:86956396..86956411,-!p1@Ascl1!0.92!11.49!Ascl1;;chr11:96880072..96880079,+!p1@Sp6!0.92!7.24!Sp6;;chr18:66098702..66098742,-!p1@Rax!0.92!7.24!Rax;;chr9:43013917..43013968,-!p1@Pou2f3!0.92!7.24!Pou2f3;;chr15:102087737..102087801,-!p3@Rarg!0.91!11.99!Rarg;;chr1:57029281..57029326,-!p1@Satb2!0.91!11.24!Satb2;;chr13:53568104..53568156,-!p1@Msx2!0.90!10.49!Msx2;;chr16:18587076..18587106,-!p1@Tbx1!0.90!9.99!Tbx1;;chr14:118636214..118636235,-!p1@Sox21!0.90!8.49!Sox21;;chr1:165243379..165243402,-!p3@Prrx1!0.89!10.24!Prrx1;;chr13:72101161..72101177,-!p2@Irx1!0.89!9.49!Irx1;;chr5:77543935..77543947,-!p4@Hopx!0.89!6.74!Hopx;;chr4:119960301..119960359,-!p1@Foxo6!0.88!22.48!Foxo6;;chr2:9800207..9800234,-!p1@Gata3!0.88!20.98!Gata3;;chr4:13670499..13670526,+!p2@Runx1t1!0.88!15.24!Runx1t1;;chr4:87452200..87452229,-!p2@Mllt3!0.88!14.49!Mllt3;;chr3:17954233..17954249,+!p1@Bhlhe22!0.87!6.50!Bhlhe22;;chr2:61642743..61642758,+!p2@Tbr1!0.87!6.50!Tbr1;;chr4:87452180..87452196,-!p3@Mllt3!0.86!12.74!Mllt3;;chr10:102491405..102491416,-!p1@Alx1!0.86!6.25!Alx1;;chr15:102196745..102196769,-!p2@Sp7!0.86!6.25!Sp7;;chr8:94881733..94881790,+!p1@Irx5!0.85!12.49!Irx5;;chr5:138199361..138199441,+!p2@Tsc22d4!0.85!11.99!Tsc22d4;;chr7:30092993..30093076,+!p1@Dpf1!0.85!10.74!Dpf1;;chr2:91864449..91864492,-!p3@Creb3l1!0.85!10.24!Creb3l1;;chr3:128916868..128916890,+!p1@Pitx2!0.85!8.49!Pitx2;;chr4:150482563..150482655,-!p2@Camta1!0.84!22.23!Camta1;;chr12:34642682..34642753,+!p2@Twist1!0.84!16.49!Twist1;;chr6:128250380..128250442,-!p2@Tead4!0.84!7.74!Tead4;;chr7:144505957..144505972,-!p2@Ebf3!0.84!7.49!Ebf3;;chr1:19199236..19199258,+!p1@Tfap2b!0.84!6.00!Tfap2b;;chr2:71367142..71367167,+!p2@Dlx1!0.84!6.00!Dlx1;;chr17:26978409..26978442,-!p1@Nkx2-5!0.84!6.00!Nkx2-5;;chr11:84339016..84339044,-!p1@Lhx1!0.84!6.00!Lhx1;;chr11:21901608..21901634,-!p1@Otx1!0.84!6.00!Otx1;;chr8:87297878..87297935,-!p3@Nfix!0.83!13.49!Nfix;;chr1:93698030..93698064,+!p1@Twist2!0.83!11.99!Twist2;;chr12:37835120..37835133,+!p2@Meox2!0.83!8.49!Meox2;;chr15:76352677..76352737,-!p3@Scrt1!0.83!5.75!Scrt1;;chr1:169548377..169548430,+!p1@Rxrg!0.83!5.75!Rxrg;;chr10:62562530..62562540,+!p1@Atoh7!0.83!5.75!Atoh7;;chr3:34548946..34548972,+!p2@Sox2!0.82!6.25!Sox2;;chr14:67853425..67853454,+!p1@Ebf2!0.81!7.99!Ebf2;;chr11:106128936..106128955,-!p4@Smarcd2!0.81!6.50!Smarcd2;;chr4:150503457..150503498,-!p3@Camta1!0.81!6.25!Camta1;;chr1:173987720..173987729,-!p1@Nhlh1!0.81!5.50!Nhlh1;;chr8:87297330..87297365,-!p5@Nfix!0.81!5.50!Nfix;;chr14:67853632..67853674,+!p3@Ebf2!0.80!6.50!Ebf2;;chr2:73109983..73109996,+!p1@Sp9!0.80!5.25!Sp9;;chr19:5560570..5560582,-!p2@Ovol1!0.80!5.25!Ovol1;;chr2:151907338..151907360,+!p2@Scrt2!0.80!5.25!Scrt2;;chr19:55969946..55969973,+!p8@Tcf7l2!0.80!5.25!Tcf7l2;;chr12:37835141..37835194,+!p1@Meox2!0.79!16.99!Meox2;;chr2:91864300..91864379,-!p2@Creb3l1!0.79!15.74!Creb3l1;;chr14:56443806..56443848,+!p1@Nfatc4!0.79!10.99!Nfatc4;;chr19:59533221..59533271,+!p1@Emx2!0.79!6.50!Emx2;;chr13:48758276..48758291,+!p1@Barx1!0.78!5.00!Barx1;;chr12:50483639..50483654,+!p1@Foxg1!0.78!5.00!Foxg1;;chr6:30908793..30908815,-!p1@Klf14!0.78!5.00!Klf14;;chr17:86020156..86020183,+!p1@Six3!0.78!5.00!Six3;;chr8:59799772..59799789,+!p1@Hand2!0.77!14.99!Hand2;;chr10:44178493..44178520,-!p3@Prdm1!0.77!6.99!Prdm1;;chr18:80909801..80909819,-!p1@Nfatc1!0.76!30.98!Nfatc1;;chr1:93698068..93698085,+!p2@Twist2!0.76!5.75!Twist2;;chr11:96143666..96143725,+!p1@Hoxb8!0.76!5.50!Hoxb8;;chr9:118387300..118387317,+!p1@Eomes!0.76!4.75!Eomes;;chr13:40826961..40827001,-!p4@Tfap2a!0.76!4.75!Tfap2a;;chr1:57028157..57028173,-!p3@Satb2!0.76!4.75!Satb2;;chr6:6831986..6832007,-!p4@Dlx5!0.76!4.75!Dlx5;;chr2:71384458..71384526,-!p2@Dlx2!0.76!4.75!Dlx2;;chr4:22415443..22415506,-!p1@Pou3f2!0.76!4.75!Pou3f2;;chr4:122673278..122673336,+!p1@Mycl1!0.75!15.99!Mycl1;;chr7:144506077..144506128,-!p1@Ebf3!0.75!11.49!Ebf3;;chr13:117099847..117099907,-!p1@Isl1!0.75!8.99!Isl1;;chr14:104867201..104867258,-!p1@Pou4f1!0.75!6.74!Pou4f1;;chr13:29045321..29045337,-!p2@Sox4!0.75!6.50!Sox4;;chr8:90328310..90328362,-!p3@Zfp423!0.75!5.50!Zfp423;;chr2:167363692..167363710,+!p1@Snai1!0.74!60.70!Snai1;;chr7:25292331..25292421,+!p1@Zfp428!0.74!35.22!Zfp428;;chr15:76352740..76352781,-!p5@Scrt1!0.74!4.50!Scrt1;;chr17:86020510..86020589,+!p3@Six3!0.74!4.50!Six3;;chrX:55283799..55283813,+!p1@Zic3!0.74!4.50!Zic3;;chr2:105509045..105509071,+!p1@Pax6!0.74!4.50!Pax6;;chr1:19199095..19199114,+!p5@Tfap2b!0.74!4.50!Tfap2b;;chr2:28771056..28771092,-!p1@Barhl1!0.74!4.50!Barhl1;;chr3:128902837..128902861,+!p3@Pitx2!0.74!4.50!Pitx2;;chr7:119885539..119885574,+!p3@Tead1!0.74!4.50!Tead1;;chr13:31717548..31717596,+!p1@Foxf2!0.72!8.99!Foxf2;;chr7:91558472..91558512,-!p2@Arnt2!0.72!6.25!Arnt2;;chr13:55932624..55932641,-!p2@Pitx1!0.72!4.25!Pitx1;;chr5:24104540..24104584,-!p7@Smarcd3!0.72!4.25!Smarcd3;;chr2:73110004..73110016,+!p2@Sp9!0.72!4.25!Sp9;;chr19:55968967..55968991,+!p7@Tcf7l2!0.72!4.25!Tcf7l2;;chr1:57028556..57028583,-!p5@Satb2!0.72!4.25!Satb2;;chr2:151907546..151907561,+!p1@Scrt2!0.72!4.25!Scrt2;;chr2:103264213..103264233,+!p1@Elf5!0.72!4.25!Elf5;;chr14:99697871..99697934,+!p1@Klf5!0.71!92.93!Klf5;;chr9:71743854..71743909,-!p1@Tcf12!0.71!37.22!Tcf12;;chr7:25372631..25372684,-!p1@Zfp575!0.71!13.74!Zfp575;;chr9:87626083..87626108,-!p1@Tbx18!0.71!9.74!Tbx18;;chr2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Zfp740;;chr6:92041399..92041417,+!p2@Nr2c2!0.31!5.50!Nr2c2;;chr7:4947697..4947718,-!p2@Zfp579!0.31!4.75!Zfp579;;chr3:30500978..30501018,+!p1@Mynn!0.31!4.25!Mynn;;chr2:77357622..77357704,-!p1@Zfp385b!0.31!4.25!Zfp385b;;chr18:80348151..80348181,-!p2@Adnp2!0.31!4.00!Adnp2;;chr4:58956447..58956510,+!p1@Zkscan16!0.31!3.25!Zkscan16;;chr4:97444120..97444141,+!p13@Nfia!0.31!2.75!Nfia;;chr10:67375368..67375433,-!p1@Zfp365!0.31!2.50!Zfp365;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.31!2.00!Ppp1r13l;;chr9:106355684..106355744,+!p5@Pcbp4!0.31!2.00!Pcbp4;;chr2:115890294..115890334,-!p9@Meis2!0.31!1.75!Meis2;;chr2:115888250..115888298,-!p10@Meis2!0.31!1.50!Meis2;;chr8:94325273..94325288,-!p5@Irx3!0.31!1.50!Irx3;;chr10:44178575..44178590,-!p5@Prdm1!0.31!1.50!Prdm1;;chr10:80889867..80889924,-!p1@Nfic!0.30!50.21!Nfic;;chr1:64167972..64168026,-!p1@Klf7!0.30!42.22!Klf7;;chr6:117791192..117791269,+!p1@Zfp637!0.30!28.73!Zfp637;;chr10:67599319..67599360,-!p2@Arid5b!0.30!19.24!Arid5b;;chr9:121669118..121669179,+!p1@Zfp651!0.30!18.74!Zfp651;;chr19:26679654..26679675,+!p1@Smarca2!0.30!16.49!Smarca2;;chr4:128483534..128483613,-!p1@Zfp362!0.30!11.99!Zfp362;;chr2:130120884..130120972,+!p1@Ebf4!0.30!9.99!Ebf4;;chr18:69504195..69504213,+!p4@Tcf4!0.30!7.49!Tcf4;;chr7:30836380..30836430,-!p1@Zfp14!0.30!6.25!Zfp14;;chr9:48644037..48644067,-!p2@Zbtb16!0.30!3.75!Zbtb16;;chr14:52935788..52935817,-!p2@Sall2!0.30!3.25!Sall2;;chr11:85646341..85646352,+!p3@Tbx2!0.30!2.75!Tbx2;;chr1:120949925..120949947,-!p4@Gli2!0.30!2.75!Gli2;;chr7:4946900..4946921,-!p5@Zfp579!0.30!2.25!Zfp579;;chr15:37162796..37162828,+!p1@Grhl2!0.30!2.25!Grhl2;;chr1:179372625..179372654,+!p4@Zfp238!0.30!2.00!Zfp238;;chr8:79423672..79423727,+!p2@Nr3c2!0.30!1.50!Nr3c2;;chr15:102865131..102865151,+!p2@Hoxc4!0.30!1.25!Hoxc4;;chr3:130813557..130813582,+!p5@Lef1!0.30!1.25!Lef1;;chr2:74543397..74543435,+!p2@Hoxd8!0.30!1.00!Hoxd8;;chr3:128902878..128902893,+!p6@Pitx2!0.30!1.00!Pitx2;;chr4:13678514..13678539,+!p14@Runx1t1!0.30!1.00!Runx1t1;;chr4:115612528..115612533,-!p1@Dmbx1!0.30!1.00!Dmbx1;;chr4:84321317..84321332,-!p4@Bnc2!0.30!1.00!Bnc2;;chr4:148178459..148178482,+!p4@Casz1!0.30!1.00!Casz1;;chr4:87452167..87452178,-!p8@Mllt3!0.30!1.00!Mllt3;;chr3:34548845..34548856,+!p4@Sox2!0.30!1.00!Sox2;;chr4:107107224..107107259,+!p2@Glis1!0.30!1.00!Glis1;;chr3:66785181..66785199,-!p2@Shox2!0.30!1.00!Shox2;;chr4:13678684..13678704,+!p17@Runx1t1!0.30!1.00!Runx1t1;;chr13:95645555..95645566,+!p3@Otp!0.30!1.00!Otp;;chr13:95645580..95645598,+!p1@Otp!0.30!1.00!Otp;;chr15:37163065..37163092,+!p4@Grhl2!0.30!1.00!Grhl2;;chr14:13178241..13178254,-!p4@Fezf2!0.30!1.00!Fezf2;;chr12:85910771..85910785,+!p1@Vsx2!0.30!1.00!Vsx2;;chr15:102196702..102196713,-!p6@Sp7!0.30!1.00!Sp7;;chr15:35225873..35225889,+!p2@Osr2!0.30!1.00!Osr2;;chr13:83643136..83643158,+!p7@Mef2c!0.30!1.00!Mef2c;;chr13:53568081..53568094,-!p3@Msx2!0.30!1.00!Msx2;;chr12:57636220..57636236,-!p3@Nkx2-1!0.30!1.00!Nkx2-1;;chr13:44936077..44936096,+!p9@Jarid2!0.30!1.00!Jarid2;;chr13:73398004..73398017,+!p2@Irx4!0.30!1.00!Irx4;;chr13:55937432..55937460,-!p4@Pitx1!0.30!1.00!Pitx1;;chr8:12395874..12395885,+!p2@Sox1!0.30!1.00!Sox1;;chr9:96632719..96632745,-!p7@Zbtb38!0.30!1.00!Zbtb38;;chr9:87626109..87626120,-!p3@Tbx18!0.30!1.00!Tbx18;;chr9:91273412..91273420,+!p7@Zic4!0.30!1.00!Zic4;;chr5:24104452..24104472,-!p11@Smarcd3!0.30!1.00!Smarcd3;;chr5:67490284..67490302,-!p1@Phox2b!0.30!1.00!Phox2b;;chr6:97941770..97941784,+!p4@Mitf!0.30!1.00!Mitf;;chr6:97879817..97879857,+!p2@Mitf!0.30!1.00!Mitf;;chr5:122345353..122345358,-!p5@Cux2!0.30!1.00!Cux2;;chr5:140019843..140019858,+!p2@Uncx!0.30!1.00!Uncx;;chr7:116093986..116093999,+!p4@Tub!0.30!1.00!Tub;;chr6:83020355..83020371,-!p1@Tlx2!0.30!1.00!Tlx2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.30!1.00!Nkx3-2;;chr1:191994700..191994711,-!p4@Prox1!0.30!1.00!Prox1;;chr1:57028111..57028122,-!p9@Satb2!0.30!1.00!Satb2;;chr1:136186545..136186554,+!p2@Myog!0.30!1.00!Myog;;chr2:30700830..30700843,+!p4@Prrx2!0.30!1.00!Prrx2;;chr19:59533595..59533628,+!p6@Emx2!0.30!1.00!Emx2;;chr19:59244875..59244895,-!p2@Vax1!0.30!1.00!Vax1;;chr1:122499088..122499099,+!p2@En1!0.30!1.00!En1;;chr1:169619683..169619694,+!p1@Lmx1a!0.30!1.00!Lmx1a;;chr2:168427120..168427138,-!p4@Nfatc2!0.30!1.00!Nfatc2;;chr19:55972753..55972764,+!p33@Tcf7l2!0.30!1.00!Tcf7l2;;chr19:55967842..55967878,+!p13@Tcf7l2!0.30!1.00!Tcf7l2;;chr19:55969438..55969450,+!p53@Tcf7l2!0.30!1.00!Tcf7l2;;chr1:169528491..169528505,+!p4@Rxrg!0.30!1.00!Rxrg;;chr1:6720216..6720232,+!p1@St18!0.30!1.00!St18;;chr18:81183755..81183761,-!p1@Sall3!0.30!1.00!Sall3;;chr17:26978521..26978536,-!p2@Nkx2-5!0.30!1.00!Nkx2-5;;chr15:95485240..95485257,-!p1@Dbx2!0.30!1.00!Dbx2;;chr17:86020137..86020149,+!p5@Six3!0.30!1.00!Six3;;chr18:14130594..14130600,-!p7@Zfp521!0.30!1.00!Zfp521;;chr19:46222739..46222745,-!p2@Pitx3!0.30!1.00!Pitx3;;chr17:48015995..48016037,-!p12@Foxp4!0.30!1.00!Foxp4;;chr11:98826178..98826197,+!p7@Rara!0.30!1.00!Rara;;chr10:12844757..12844771,+!p2@Plagl1!0.30!1.00!Plagl1;;chr11:94981134..94981147,+!p2@Dlx3!0.30!1.00!Dlx3;;chr11:96213183..96213188,+!p@chr11:96213183..96213188,+!0.30!1.00!Hoxb2;;chr11:23978206..23978219,+!p12@Bcl11a!0.30!1.00!Bcl11a;;chr4:82151178..82151262,-!p1@Nfib!0.29!70.95!Nfib;;chr7:52071956..52071978,-!p1@Atf5!0.29!57.46!Atf5;;chr9:56266612..56266654,+!p1@Hmg20a!0.29!48.71!Hmg20a;;chr17:28487692..28487765,-!p1@Tead3!0.29!34.47!Tead3;;chr8:3493135..3493212,+!p1@Zfp358!0.29!28.98!Zfp358;;chr7:148513456..148513506,-!p1@Deaf1!0.29!26.98!Deaf1;;chr5:138187341..138187406,+!p3@Tsc22d4!0.29!18.24!Tsc22d4;;chr14:55711198..55711258,-!p1@Zfhx2!0.29!9.49!Zfhx2;;chr4:128483680..128483715,-!p3@Zfp362!0.29!5.75!Zfp362;;chr4:54960870..54960926,+!p1@Zfp462!0.29!5.75!Zfp462;;chrX:70587926..70587945,+!p2@Zfp275!0.29!5.25!Zfp275;;chr4:133276698..133276743,-!p6@Arid1a!0.29!4.25!Arid1a;;chr9:55785981..55786009,-!p2@Scaper!0.29!4.00!Scaper;;chr13:15555670..15555771,+!p2@Gli3!0.29!3.75!Gli3;;chr5:34530277..34530292,-!p3@Mxd4!0.29!3.75!Mxd4;;chr5:122500142..122500167,-!p2@Cux2!0.29!3.00!Cux2;;chr14:76814883..76814898,+!p9@Tsc22d1!0.29!2.75!Tsc22d1;;chr2:90936947..90936977,+!p2@Sfpi1!0.29!2.75!Sfpi1;;chr4:6917971..6918000,-!p3@Tox!0.29!2.75!Tox;;chr5:138187583..138187602,+!p6@Tsc22d4!0.29!2.50!Tsc22d4;;chr18:64499674..64499696,+!p1@Onecut2!0.29!2.25!Onecut2;;chr8:87237732..87237745,-!p7@Nfix!0.29!2.00!Nfix;;chr14:56443781..56443800,+!p3@Nfatc4!0.29!1.50!Nfatc4;;chr15:40486427..40486437,+!p5@Zfpm2!0.29!1.50!Zfpm2;;chr7:38558544..38558566,-!p4@Zfp536!0.29!1.25!Zfp536;;chr1:136456791..136456810,+!p1@Kdm5b!0.28!61.95!Kdm5b;;chr1:170362273..170362317,-!p1@Pbx1!0.28!48.71!Pbx1;;chr6:98978245..98978289,-!p1@Foxp1!0.28!25.23!Foxp1;;chr7:134758740..134758783,-!p1@Zfp629!0.28!24.23!Zfp629;;chr4:97444012..97444045,+!p4@Nfia!0.28!12.49!Nfia;;chr3:8666963..8666978,-!p1@Hey1!0.28!10.49!Hey1;;chr2:44968737..44968758,-!p2@Zeb2!0.28!9.24!Zeb2;;chr6:131338363..131338383,-!p4@Csda!0.28!6.99!Csda;;chr2:152223441..152223465,-!p2@Sox12!0.28!6.50!Sox12;;chr11:62545367..62545412,-!p1@Zfp287!0.28!6.25!Zfp287;;chr17:46693078..46693097,-!p3@Srf!0.28!6.25!Srf;;chr10:13685585..13685645,+!p2@Hivep2!0.28!5.25!Hivep2;;chr2:25562315..25562344,+!p3@Bmyc!0.28!5.00!Bmyc;;chr15:102301130..102301147,+!p3@Pcbp2!0.28!4.50!Pcbp2;;chr2:44966659..44966675,-!p7@Zeb2!0.28!4.25!Zeb2;;chr8:118230894..118230918,-!p5@Maf!0.28!4.25!Maf;;chr15:102034510..102034549,+!p4@Zfp740!0.28!3.50!Zfp740;;chr4:154010409..154010466,-!p2@Prdm16!0.28!3.25!Prdm16;;chr6:47780508..47780583,-!p1@Zfp786!0.28!2.50!Zfp786;;chr11:85646427..85646451,+!p4@Tbx2!0.28!2.25!Tbx2;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.28!2.25!Zfhx3;;chr8:87324311..87324316,-!p8@Nfix!0.28!2.00!Nfix;;chr4:114581524..114581551,-!p1@Foxd2!0.28!1.75!Foxd2;;chr8:111227354..111227401,+!p@chr8:111227354..111227401,+!0.28!1.50!Zfhx3;;chr8:87237711..87237727,-!p11@Nfix!0.28!1.50!Nfix;;chr8:90483433..90483457,-!p2@Zfp423!0.28!1.50!Zfp423;;chr17:51971960..51971979,-!p1@Satb1!0.28!1.50!Satb1;;chr7:25292118..25292129,+!p8@Zfp428!0.28!1.25!Zfp428;;chr5:125538703..125538715,-!p5@Ncor2!0.28!1.25!Ncor2;;chr4:107107175..107107204,+!p1@Glis1!0.28!1.25!Glis1;;chr2:156666435..156666476,+!p4@Tgif2!0.28!1.25!Tgif2;;chr15:37162834..37162849,+!p2@Grhl2!0.28!1.25!Grhl2;;chr4:82151653..82151706,-!p2@Nfib!0.27!47.46!Nfib;;chr16:22439681..22439698,-!p1@Etv5!0.27!28.98!Etv5;;chr11:44430812..44430838,+!p1@Ebf1!0.27!15.74!Ebf1;;chr7:71083876..71083932,-!p2@Klf13!0.27!12.99!Klf13;;chr8:72356532..72356611,+!p1@Pbx4!0.27!6.25!Pbx4;;chr7:134592623..134592680,-!p1@Zfp689!0.27!6.00!Zfp689;;chr8:81923412..81923431,-!p2@Smad1!0.27!5.50!Smad1;;chr7:134489096..134489123,-!p2@Zfp768!0.27!4.50!Zfp768;;chr10:127896315..127896333,+!p2@Smarcc2!0.27!3.75!Smarcc2;;chr4:135842030..135842065,+!p3@Zfp46!0.27!3.75!Zfp46;;chr14:17407970..17408015,-!p2@Rarb!0.27!3.75!Rarb;;chr12:86940300..86940312,+!p2@Jdp2!0.27!3.25!Jdp2;;chr4:84320893..84320910,-!p1@Bnc2!0.27!3.00!Bnc2;;chr16:8672256..8672279,-!p1@Carhsp1,p1@Gm9791!0.27!3.00!Carhsp1;;chr17:47874123..47874156,+!p2@Tfeb!0.27!3.00!Tfeb;;chr7:74517732..74517743,-!p4@Mef2a!0.27!2.50!Mef2a;;chr9:106356265..106356276,+!p4@Pcbp4!0.27!2.00!Pcbp4;;chr18:69752912..69752928,+!p9@Tcf4!0.27!1.75!Tcf4;;chr14:65977415..65977426,+!p6@Zfp395!0.27!1.75!Zfp395;;chr11:69393784..69393805,+!p3@Trp53!0.27!1.50!Trp53;;chr15:85566014..85566045,+!p3@Ppara!0.27!1.50!Ppara;;chr4:154010228..154010244,-!p4@Prdm16!0.27!1.50!Prdm16;;chr3:8667033..8667046,-!p3@Hey1!0.27!1.50!Hey1;;chr12:86939657..86939685,+!p6@Jdp2!0.27!1.25!Jdp2;;chr13:29045274..29045293,-!p6@Sox4!0.27!1.25!Sox4;;chr13:29045252..29045271,-!p5@Sox4!0.27!1.25!Sox4;;chr7:123177120..123177138,-!p10@Sox6!0.27!1.25!Sox6;;chr7:123174485..123174514,-!p6@Sox6!0.27!1.25!Sox6;;chr2:17976799..17976829,+!p5@Mllt10!0.27!1.25!Mllt10;;chr4:154597177..154597195,-!p1@Ski!0.26!61.95!Ski;;chr5:134790507..134790546,-!p1@Gtf2i!0.26!39.97!Gtf2i;;chr8:13869673..13869740,+!p1@Zfp828!0.26!39.47!Zfp828;;chr2:84877369..84877459,+!p1@Ssrp1!0.26!33.72!Ssrp1;;chr1:9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| |||
|ffid_belonging_in_development=FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|id=FF:475-3I5 | |||
|is_a=EFO:0002091;;FF:0011365 | |||
|is_obsolete= | |||
|library_id=CNhs10517 | |||
|library_id_phase_based=2:CNhs10517 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;475 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;475 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E17.CNhs10517.475-3I5.mm9.nobarcode.rdna.fa.gz | |||
|name=whole body, embryo E17 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs10517,LSID649,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|repeat_enrich_byfamily=0.0582042379648785,0,0,0,0,0,0.178980039515686,0,0,0,0,0.354784001227427,0,0,0,0,0,0,-0.0159117922890027,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.257557357746121,0,0,0,0,0.0815539114734762,-0.0729098481710317,0.165500922519348,-0.0770239133494823,0.400184771464118,0.740558169382928,0.0968441960560167,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,0.044850941273255,-0.00978522276147542,0.540615633888594,-0.0042748059424986,0,0,0.153697966714669,0.0290874864006108,0,0,0.11191788761518,0.0993432899150266,0.233108491368589,-0.0788315948399074,0,0,0,0,0,0,0.110572067490695,0.327471294113814,0.272919688110632,0,0,0.175981558593572,0,0 | |||
|rna_box=3 | |||
|rna_catalog_number= | |||
|rna_concentration= | |||
|rna_extraction_protocol= | |||
|rna_lot_number= | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=I5 | |||
|rna_rin= | |||
|rna_sample_type= | |||
|rna_tube_id=3I5 | |||
|rna_weight_ug= | |||
|sample_age= | |||
|sample_category=developmental | |||
|sample_cell_catalog= | |||
|sample_cell_line= | |||
|sample_cell_lot= | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage=17 days embryo | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_id=475 | |||
|sample_note= | |||
|sample_sex=mixture | |||
|sample_species=Mouse (Mus musculus) | |||
|sample_strain=C57BL/6J | |||
|sample_tissue=whole body | |||
|top_motifs=HOX{A4,D4}:2.68569107211;NKX2-3_NKX2-5:2.55736200275;TBP:2.32951102147;MYOD1:2.30375529371;ZNF148:2.23144087114;TFAP4:2.16868216543;LHX3,4:2.16643522216;SMAD1..7,9:2.08138674102;EP300:2.04394080423;VSX1,2:1.93282657623;HMX1:1.91462650712;LEF1_TCF7_TCF7L1,2:1.85323421896;TFCP2:1.80488591949;NKX3-2:1.78212765743;GLI1..3:1.77729332567;ESR1:1.73803220282;MAZ:1.73773887965;PATZ1:1.70869986244;TGIF1:1.69573676233;GTF2I:1.69092665135;TFAP2{A,C}:1.67708137463;RREB1:1.63545460541;MYFfamily:1.61174194701;HOX{A5,B5}:1.58406998915;NANOG:1.56547922005;MAFB:1.54679858982;MZF1:1.52212700371;XCPE1{core}:1.51977862057;SOX{8,9,10}:1.5159654057;TBX4,5:1.4846203676;KLF4:1.43798453665;NHLH1,2:1.43055545245;T:1.41018349147;SP1:1.30023624957;PAX5:1.28388265298;MTF1:1.27341348513;PRDM1:1.26568770542;PRRX1,2:1.25352938978;HIC1:1.24871630303;ZNF238:1.24159751596;ZNF423:1.23568411323;PPARG:1.21430524939;EN1,2:1.19549819391;GTF2A1,2:1.18837826061;TOPORS:1.18509984788;MED-1{core}:1.14943540208;HAND1,2:1.14892217482;POU5F1:1.13170143425;REST:1.12906505493;FOXL1:1.11542136744;TAL1_TCF{3,4,12}:1.11469384426;ZIC1..3:1.10665695993;FOS_FOS{B,L1}_JUN{B,D}:1.078195146;ATF2:1.07798293529;ZBTB6:1.07737777143;GFI1B:1.07162478685;MTE{core}:1.04390083216;TFAP2B:1.03674304599;EGR1..3:1.03609204182;GCM1,2:1.01408569945;SOX2:1.01154909249;NKX2-1,4:1.00868261943;MEF2{A,B,C,D}:1.00128238137;ALX1:0.997125735133;LMO2:0.976492872008;RFX2..5_RFXANK_RFXAP:0.971025072725;BREu{core}:0.951249773624;EBF1:0.868217456185;POU6F1:0.849924091578;ADNP_IRX_SIX_ZHX:0.839405087081;ATF6:0.829794325232;TLX1..3_NFIC{dimer}:0.815340469772;TEAD1:0.790667648071;ZFP161:0.787775321524;HIF1A:0.781853251546;SOX5:0.761245714818;HOXA9_MEIS1:0.754892898835;IKZF1:0.736648821572;RFX1:0.736567579381;HES1:0.724704941662;PAX1,9:0.720572858967;TFDP1:0.715685035853;FOSL2:0.712462996483;TLX2:0.705409400647;PAX2:0.671631217492;TP53:0.668382436487;OCT4_SOX2{dimer}:0.661010208808;UFEwm:0.632327870657;SNAI1..3:0.628764451978;GFI1:0.625231921669;POU2F1..3:0.594510463046;AHR_ARNT_ARNT2:0.589856958085;FOXP3:0.562546389054;CRX:0.537999967687;CDC5L:0.520609837959;CUX2:0.517118415739;RXRA_VDR{dimer}:0.500421929583;NFATC1..3:0.487573473824;PAX6:0.463799301415;FOXM1:0.446051829919;SPZ1:0.433853532928;HSF1,2:0.431450692837;NR3C1:0.419192414055;SRF:0.413359280494;ZEB1:0.403884221948;HMGA1,2:0.378799896481;ZNF384:0.373987041466;NFE2L2:0.372929776738;GATA4:0.313918890353;DBP:0.300811685671;MYBL2:0.286808872327;NFE2L1:0.253322040887;POU3F1..4:0.225161117918;JUN:0.195012153572;FOXQ1:0.183995593076;SOX17:0.166211920348;PAX4:0.152062031825;RBPJ:0.112849138372;IKZF2:0.0987136402802;FOXA2:0.0418340446791;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0331973210569;NKX6-1,2:0.0314137494615;FOX{F1,F2,J1}:0.021143416032;PITX1..3:0.0209400051872;RORA:0.00600310770537;ZNF143:-0.0126391636251;BACH2:-0.0400508329885;NANOG{mouse}:-0.0426439883084;NFE2:-0.0467209596886;FOXN1:-0.0763305035385;bHLH_family:-0.0934174599822;HLF:-0.130276631385;NR5A1,2:-0.137712024458;NRF1:-0.195176484059;RXR{A,B,G}:-0.210654342965;POU1F1:-0.219678866509;PAX8:-0.224760791666;HBP1_HMGB_SSRP1_UBTF:-0.266083329327;NFIX:-0.280872870914;GZF1:-0.310496966396;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.323209981856;NKX2-2,8:-0.338612128001;RUNX1..3:-0.346608785582;NFKB1_REL_RELA:-0.359799999423;NFY{A,B,C}:-0.411425648207;PBX1:-0.428339641763;SPIB:-0.434825630321;NR1H4:-0.459290173593;EVI1:-0.473645816773;ONECUT1,2:-0.484201264973;ATF5_CREB3:-0.502365199483;FOX{I1,J2}:-0.52526014969;E2F1..5:-0.547903127463;SPI1:-0.56298482944;STAT2,4,6:-0.586921628762;CEBPA,B_DDIT3:-0.608628305221;MYB:-0.612894052749;STAT5{A,B}:-0.640098285708;ALX4:-0.647716429468;FOX{D1,D2}:-0.686138955155;BPTF:-0.734758009289;NKX3-1:-0.736319367236;ETS1,2:-0.75975990109;TEF:-0.763716425727;HNF4A_NR2F1,2:-0.77456273727;AIRE:-0.832969666159;FOXD3:-0.834088590866;FOXP1:-0.858480837273;HNF1A:-0.862245966836;CREB1:-0.867769540971;SREBF1,2:-0.869641948776;ATF4:-0.873359394194;NFIL3:-0.873909663536;IRF7:-0.888315671246;DMAP1_NCOR{1,2}_SMARC:-0.913054470374;AR:-0.918501340411;GATA6:-0.951601437774;ESRRA:-0.968095613284;FOXO1,3,4:-0.998486495493;IRF1,2:-1.08746881907;ELF1,2,4:-1.16426446057;YY1:-1.17503639464;ELK1,4_GABP{A,B1}:-1.1751415719;ARID5B:-1.29606726052;STAT1,3:-1.35339722579;CDX1,2,4:-1.44183473779;NR6A1:-1.53816732902;PDX1:-1.61374068992;ZBTB16:-1.71748275825 | |top_motifs=HOX{A4,D4}:2.68569107211;NKX2-3_NKX2-5:2.55736200275;TBP:2.32951102147;MYOD1:2.30375529371;ZNF148:2.23144087114;TFAP4:2.16868216543;LHX3,4:2.16643522216;SMAD1..7,9:2.08138674102;EP300:2.04394080423;VSX1,2:1.93282657623;HMX1:1.91462650712;LEF1_TCF7_TCF7L1,2:1.85323421896;TFCP2:1.80488591949;NKX3-2:1.78212765743;GLI1..3:1.77729332567;ESR1:1.73803220282;MAZ:1.73773887965;PATZ1:1.70869986244;TGIF1:1.69573676233;GTF2I:1.69092665135;TFAP2{A,C}:1.67708137463;RREB1:1.63545460541;MYFfamily:1.61174194701;HOX{A5,B5}:1.58406998915;NANOG:1.56547922005;MAFB:1.54679858982;MZF1:1.52212700371;XCPE1{core}:1.51977862057;SOX{8,9,10}:1.5159654057;TBX4,5:1.4846203676;KLF4:1.43798453665;NHLH1,2:1.43055545245;T:1.41018349147;SP1:1.30023624957;PAX5:1.28388265298;MTF1:1.27341348513;PRDM1:1.26568770542;PRRX1,2:1.25352938978;HIC1:1.24871630303;ZNF238:1.24159751596;ZNF423:1.23568411323;PPARG:1.21430524939;EN1,2:1.19549819391;GTF2A1,2:1.18837826061;TOPORS:1.18509984788;MED-1{core}:1.14943540208;HAND1,2:1.14892217482;POU5F1:1.13170143425;REST:1.12906505493;FOXL1:1.11542136744;TAL1_TCF{3,4,12}:1.11469384426;ZIC1..3:1.10665695993;FOS_FOS{B,L1}_JUN{B,D}:1.078195146;ATF2:1.07798293529;ZBTB6:1.07737777143;GFI1B:1.07162478685;MTE{core}:1.04390083216;TFAP2B:1.03674304599;EGR1..3:1.03609204182;GCM1,2:1.01408569945;SOX2:1.01154909249;NKX2-1,4:1.00868261943;MEF2{A,B,C,D}:1.00128238137;ALX1:0.997125735133;LMO2:0.976492872008;RFX2..5_RFXANK_RFXAP:0.971025072725;BREu{core}:0.951249773624;EBF1:0.868217456185;POU6F1:0.849924091578;ADNP_IRX_SIX_ZHX:0.839405087081;ATF6:0.829794325232;TLX1..3_NFIC{dimer}:0.815340469772;TEAD1:0.790667648071;ZFP161:0.787775321524;HIF1A:0.781853251546;SOX5:0.761245714818;HOXA9_MEIS1:0.754892898835;IKZF1:0.736648821572;RFX1:0.736567579381;HES1:0.724704941662;PAX1,9:0.720572858967;TFDP1:0.715685035853;FOSL2:0.712462996483;TLX2:0.705409400647;PAX2:0.671631217492;TP53:0.668382436487;OCT4_SOX2{dimer}:0.661010208808;UFEwm:0.632327870657;SNAI1..3:0.628764451978;GFI1:0.625231921669;POU2F1..3:0.594510463046;AHR_ARNT_ARNT2:0.589856958085;FOXP3:0.562546389054;CRX:0.537999967687;CDC5L:0.520609837959;CUX2:0.517118415739;RXRA_VDR{dimer}:0.500421929583;NFATC1..3:0.487573473824;PAX6:0.463799301415;FOXM1:0.446051829919;SPZ1:0.433853532928;HSF1,2:0.431450692837;NR3C1:0.419192414055;SRF:0.413359280494;ZEB1:0.403884221948;HMGA1,2:0.378799896481;ZNF384:0.373987041466;NFE2L2:0.372929776738;GATA4:0.313918890353;DBP:0.300811685671;MYBL2:0.286808872327;NFE2L1:0.253322040887;POU3F1..4:0.225161117918;JUN:0.195012153572;FOXQ1:0.183995593076;SOX17:0.166211920348;PAX4:0.152062031825;RBPJ:0.112849138372;IKZF2:0.0987136402802;FOXA2:0.0418340446791;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0331973210569;NKX6-1,2:0.0314137494615;FOX{F1,F2,J1}:0.021143416032;PITX1..3:0.0209400051872;RORA:0.00600310770537;ZNF143:-0.0126391636251;BACH2:-0.0400508329885;NANOG{mouse}:-0.0426439883084;NFE2:-0.0467209596886;FOXN1:-0.0763305035385;bHLH_family:-0.0934174599822;HLF:-0.130276631385;NR5A1,2:-0.137712024458;NRF1:-0.195176484059;RXR{A,B,G}:-0.210654342965;POU1F1:-0.219678866509;PAX8:-0.224760791666;HBP1_HMGB_SSRP1_UBTF:-0.266083329327;NFIX:-0.280872870914;GZF1:-0.310496966396;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.323209981856;NKX2-2,8:-0.338612128001;RUNX1..3:-0.346608785582;NFKB1_REL_RELA:-0.359799999423;NFY{A,B,C}:-0.411425648207;PBX1:-0.428339641763;SPIB:-0.434825630321;NR1H4:-0.459290173593;EVI1:-0.473645816773;ONECUT1,2:-0.484201264973;ATF5_CREB3:-0.502365199483;FOX{I1,J2}:-0.52526014969;E2F1..5:-0.547903127463;SPI1:-0.56298482944;STAT2,4,6:-0.586921628762;CEBPA,B_DDIT3:-0.608628305221;MYB:-0.612894052749;STAT5{A,B}:-0.640098285708;ALX4:-0.647716429468;FOX{D1,D2}:-0.686138955155;BPTF:-0.734758009289;NKX3-1:-0.736319367236;ETS1,2:-0.75975990109;TEF:-0.763716425727;HNF4A_NR2F1,2:-0.77456273727;AIRE:-0.832969666159;FOXD3:-0.834088590866;FOXP1:-0.858480837273;HNF1A:-0.862245966836;CREB1:-0.867769540971;SREBF1,2:-0.869641948776;ATF4:-0.873359394194;NFIL3:-0.873909663536;IRF7:-0.888315671246;DMAP1_NCOR{1,2}_SMARC:-0.913054470374;AR:-0.918501340411;GATA6:-0.951601437774;ESRRA:-0.968095613284;FOXO1,3,4:-0.998486495493;IRF1,2:-1.08746881907;ELF1,2,4:-1.16426446057;YY1:-1.17503639464;ELK1,4_GABP{A,B1}:-1.1751415719;ARID5B:-1.29606726052;STAT1,3:-1.35339722579;CDX1,2,4:-1.44183473779;NR6A1:-1.53816732902;PDX1:-1.61374068992;ZBTB16:-1.71748275825 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:475-3I5;search_select_hide=table117:475-3I5 | |||
}} | }} |
Latest revision as of 19:17, 4 June 2020
Name: | whole body, embryo E17 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10517 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10517
0 | 0 |
1 | 0.243 |
10 | 0 |
100 | 0.176 |
1000 | 0.176 |
1001 | -0.0633 |
1002 | 0.0447 |
1003 | 0.335 |
1004 | 0.136 |
1005 | 0 |
1006 | 0.269 |
1007 | -0.0202 |
1008 | 0 |
1009 | 0.111 |
101 | -0.0674 |
1010 | 0 |
1011 | 0.246 |
1012 | 0 |
1013 | -0.0375 |
1014 | 0.481 |
1015 | 0.232 |
1016 | 0.274 |
1017 | 0.0968 |
1018 | 0.243 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.0265 |
1023 | 0 |
1024 | 0.161 |
1025 | 0.176 |
1026 | 0.118 |
1027 | 0.0968 |
1028 | 0 |
1029 | -0.0179 |
103 | 0.721 |
1030 | 0 |
1031 | 0.421 |
1032 | 0.0374 |
1033 | 0.0303 |
1034 | 0 |
1035 | 0 |
1036 | -0.0723 |
1037 | 0 |
1038 | -0.018 |
1039 | -0.00831 |
104 | 0 |
1040 | 0.135 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10517
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10517
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.196 |
10 | 10 | 0.0344 |
100 | 100 | 0.531 |
101 | 101 | 0.364 |
102 | 102 | 0.843 |
103 | 103 | 0.0144 |
104 | 104 | 0.65 |
105 | 105 | 0.971 |
106 | 106 | 0.424 |
107 | 107 | 0.928 |
108 | 108 | 0.464 |
109 | 109 | 0.0502 |
11 | 11 | 0.0611 |
110 | 110 | 0.0492 |
111 | 111 | 0.00339 |
112 | 112 | 0.00498 |
113 | 113 | 0.974 |
114 | 114 | 0.134 |
115 | 115 | 0.915 |
116 | 116 | 0.646 |
117 | 117 | 0.00129 |
118 | 118 | 0.137 |
119 | 119 | 0.286 |
12 | 12 | 0.839 |
120 | 120 | 0.825 |
121 | 121 | 0.434 |
122 | 122 | 0.549 |
123 | 123 | 0.124 |
124 | 124 | 0.58 |
125 | 125 | 0.118 |
126 | 126 | 0.0157 |
127 | 127 | 0.35 |
128 | 128 | 0.536 |
129 | 129 | 0.144 |
13 | 13 | 1.6065e-5 |
130 | 130 | 0.976 |
131 | 131 | 0.882 |
132 | 132 | 0.805 |
133 | 133 | 0.38 |
134 | 134 | 0.412 |
135 | 135 | 0.785 |
136 | 136 | 0.122 |
137 | 137 | 0.363 |
138 | 138 | 0.713 |
139 | 139 | 0.0499 |
14 | 14 | 0.703 |
140 | 140 | 0.376 |
141 | 141 | 0.599 |
142 | 142 | 0.0358 |
143 | 143 | 0.264 |
144 | 144 | 0.755 |
145 | 145 | 0.0195 |
146 | 146 | 0.953 |
147 | 147 | 0.653 |
148 | 148 | 0.292 |
149 | 149 | 0.63 |
15 | 15 | 0.0141 |
150 | 150 | 0.282 |
151 | 151 | 0.54 |
152 | 152 | 0.495 |
153 | 153 | 0.681 |
154 | 154 | 0.313 |
155 | 155 | 0.128 |
156 | 156 | 2.73725e-6 |
157 | 157 | 0.691 |
158 | 158 | 0.0108 |
159 | 159 | 0.681 |
160 | 160 | 0.852 |
161 | 161 | 0.0746 |
162 | 162 | 0.742 |
163 | 163 | 0.35 |
164 | 164 | 0.0012 |
165 | 165 | 0.0372 |
166 | 166 | 0.779 |
167 | 167 | 0.00963 |
168 | 168 | 0.263 |
169 | 169 | 0.0387 |
17 | 17 | 0.232 |
18 | 18 | 0.695 |
19 | 19 | 0.436 |
2 | 2 | 0.0836 |
20 | 20 | 0.0167 |
21 | 21 | 0.719 |
22 | 22 | 0.413 |
23 | 23 | 0.556 |
24 | 24 | 0.231 |
25 | 25 | 0.357 |
26 | 26 | 0.0024 |
27 | 27 | 0.654 |
28 | 28 | 0.235 |
29 | 29 | 0.00573 |
3 | 3 | 0.0423 |
30 | 30 | 0.126 |
31 | 31 | 0.958 |
32 | 32 | 0.4 |
33 | 33 | 0.116 |
34 | 34 | 0.581 |
35 | 35 | 0.23 |
36 | 36 | 0.0846 |
37 | 37 | 0.0167 |
38 | 38 | 0.679 |
39 | 39 | 0.508 |
4 | 4 | 0.846 |
40 | 40 | 0.225 |
41 | 41 | 0.483 |
42 | 42 | 0.268 |
43 | 43 | 0.171 |
44 | 44 | 0.21 |
45 | 45 | 0.6 |
46 | 46 | 0.279 |
47 | 47 | 0.305 |
48 | 48 | 0.117 |
49 | 49 | 0.0723 |
5 | 5 | 0.0464 |
50 | 50 | 0.902 |
51 | 51 | 0.695 |
52 | 52 | 0.706 |
53 | 53 | 0.421 |
54 | 54 | 0.85 |
55 | 55 | 0.815 |
56 | 56 | 0.915 |
57 | 57 | 0.506 |
58 | 58 | 0.41 |
59 | 59 | 0.703 |
6 | 6 | 0.891 |
60 | 60 | 0.325 |
61 | 61 | 0.0767 |
62 | 62 | 0.268 |
63 | 63 | 0.587 |
64 | 64 | 0.772 |
65 | 65 | 0.79 |
66 | 66 | 0.779 |
67 | 67 | 0.957 |
68 | 68 | 0.807 |
69 | 69 | 0.979 |
7 | 7 | 0.0733 |
70 | 70 | 0.0524 |
71 | 71 | 0.0206 |
72 | 72 | 0.373 |
73 | 73 | 0.0242 |
74 | 74 | 0.498 |
75 | 75 | 0.0203 |
76 | 76 | 0.015 |
77 | 77 | 0.806 |
78 | 78 | 0.0231 |
79 | 79 | 0.698 |
8 | 8 | 0.0777 |
80 | 80 | 0.515 |
81 | 81 | 0.939 |
82 | 82 | 0.264 |
83 | 83 | 0.237 |
84 | 84 | 0.751 |
85 | 85 | 0.433 |
86 | 86 | 0.327 |
87 | 87 | 0.605 |
88 | 88 | 0.361 |
89 | 89 | 0.677 |
9 | 9 | 0.944 |
90 | 90 | 0.0192 |
91 | 91 | 0.606 |
92 | 92 | 0.321 |
93 | 93 | 0.0459 |
94 | 94 | 0.567 |
95 | 95 | 0.0251 |
96 | 96 | 0.592 |
97 | 97 | 0.863 |
98 | 98 | 0.817 |
99 | 99 | 0.741 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10517
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011365 (mouse whole body- embryo E17 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
FF:0000294 (mouse embryonic day 11 sample)