FFCP PHASE1:Hg19::chr12:57623787..57623800,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z9F1,P34897,Q5BJF5,Q5HYG8 | |UniProt=B7Z9F1,P34897,Q5BJF5,Q5HYG8 | ||
|association_with_transcript=-27bp_to_NM_001166358,NR_029416_5end | |association_with_transcript=-27bp_to_NM_001166358,NR_029416_5end | ||
|cluster_id=chr12:57623787..57623800,+ | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_27_at_SHMT2_5end | |description=CAGE_peak_27_at_SHMT2_5end | ||
|id=chr12:57623787..57623800,+ | |id=chr12:57623787..57623800,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000222;5.97e-34;1!CL:0002554;6.48e-18;2!CL:0000860;3.41e-08;33!CL:0002057;3.41e-08;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002554,6.48e-18,2;CL:0000860,8.52e-08,42;CL:0002057,8.52e-08,42;CL:0000473,6.65e-07,48;CL:0000234,6.65e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p27@SHMT2 | |short_description=p27@SHMT2 | ||
}} | }} |
Latest revision as of 13:35, 19 September 2015
Short description: | p27@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_27_at_SHMT2_5end |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | -27bp_to_NM_001166358, NR_029416_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | B7Z9F1P34897Q5BJF5Q5HYG8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of lymphatic vessel | 6.48e-18 | 2 |
classical monocyte | 8.52e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.52e-08 | 42 |
defensive cell | 6.65e-07 | 48 |
phagocyte | 6.65e-07 | 48 |