CL:0000737: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000737
|name=striated muscle cell
|namespace=cell
|def="Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721...") |
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721662544] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000737 | |||
|is_a=CL:0000187 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=striated muscle cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref=BTO:0002916;;FMA:86936 | |||
}} | }} | ||
Latest revision as of 16:36, 12 September 2014
| Name: | striated muscle cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Muscle cell which has as its direct parts myofilaments organized into sarcomeres." [GOC:tfm, ISBN:0721662544] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000187(muscle cell) |
|---|
Children
| is a: | CL:0000746 (cardiac muscle cell),CL:0002372 (myotube) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11525-119I4 (Cardiac Myocyte, donor1)
- 11605-120I3 (Cardiac Myocyte, donor2)
- 11634-122C5 (Mouse Cardiac Myocytes, donor3)
- 11686-122I3 (Cardiac Myocyte, donor3)
- 11711-123C1 (Mouse Cardiac Myocytes, donor1)
- 11729-123E1 (Mouse Cardiac Myocytes, donor2)
- 13469-144I4 (Myoblast differentiation to myotubes)
- 13470-144I5 (Myoblast differentiation to myotubes)
- 13471-144I6 (Myoblast differentiation to myotubes)
- 13472-144I7 (Myoblast differentiation to myotubes)
... further results Mouse (Mus musculus)
- 11525-119I4 (Cardiac Myocyte, donor1)
- 11605-120I3 (Cardiac Myocyte, donor2)
- 11634-122C5 (Mouse Cardiac Myocytes, donor3)
- 11686-122I3 (Cardiac Myocyte, donor3)
- 11711-123C1 (Mouse Cardiac Myocytes, donor1)
- 11729-123E1 (Mouse Cardiac Myocytes, donor2)
- 13469-144I4 (Myoblast differentiation to myotubes)
- 13470-144I5 (Myoblast differentiation to myotubes)
- 13471-144I6 (Myoblast differentiation to myotubes)
- 13472-144I7 (Myoblast differentiation to myotubes)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000737 (striated muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_13e6cd558b39594295809045d3e5f430 | p@chr9:102766842..102766853, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_13e6cd558b39594295809045d3e5f430 | p3@E030003E18Rik |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_13e6cd558b39594295809045d3e5f430 | p@chr9:56096674..56096680, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_13e6cd558b39594295809045d3e5f430 | p@chr9:56096674..56096680, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_13e6cd558b39594295809045d3e5f430 | p3@E030003E18Rik |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_13e6cd558b39594295809045d3e5f430 | p@chr7:106471695..106471701, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_13e6cd558b39594295809045d3e5f430 | p@chr9:102766842..102766853, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_13e6cd558b39594295809045d3e5f430 | p@chr7:106471695..106471701, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:91183204..91183213,+#_577470b1f0a5a4cb1f8e23db3bee78c9 | p@chr6:91183204..91183213, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:91183204..91183213,+#_577470b1f0a5a4cb1f8e23db3bee78c9 | p@chr6:91183204..91183213, + |
| 2.21e-65 | FFCP PHASE1:Mm9::chr19:20567153..20567160,+#_08aec88b030a566710c775a8c1fa1e4e | p7@E030003E18Rik |
| 2.21e-65 | FFCP PHASE2:Mm9::chr19:20567153..20567160,+#_08aec88b030a566710c775a8c1fa1e4e | p7@E030003E18Rik |
| 4.9e-53 | FFCP PHASE1:Mm9::chr19:20567067..20567078,+#_9802d945389901e0f06140ec5ea28106 | p6@E030003E18Rik |
| 4.9e-53 | FFCP PHASE2:Mm9::chr11:43827555..43827566,+#_9802d945389901e0f06140ec5ea28106 | p@chr11:43827555..43827566, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr19:20567067..20567078,+#_9802d945389901e0f06140ec5ea28106 | p6@E030003E18Rik |
| 4.9e-53 | FFCP PHASE2:Mm9::chr3:103596528..103596539,-#_9802d945389901e0f06140ec5ea28106 | p@chr3:103596528..103596539, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:117772048..117772059,+#_9802d945389901e0f06140ec5ea28106 | p@chr7:117772048..117772059, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr8:11239175..11239178,-#_9802d945389901e0f06140ec5ea28106 | p@chr8:11239175..11239178, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:11239175..11239178,-#_9802d945389901e0f06140ec5ea28106 | p@chr8:11239175..11239178, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr6:91222464..91222477,+#_9802d945389901e0f06140ec5ea28106 | p@chr6:91222464..91222477, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr6:91222464..91222477,+#_9802d945389901e0f06140ec5ea28106 | p@chr6:91222464..91222477, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr7:117772048..117772059,+#_9802d945389901e0f06140ec5ea28106 | p@chr7:117772048..117772059, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr3:103596528..103596539,-#_9802d945389901e0f06140ec5ea28106 | p@chr3:103596528..103596539, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr11:43827555..43827566,+#_9802d945389901e0f06140ec5ea28106 | p@chr11:43827555..43827566, + |
| 7.35e-53 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_119c9221b70de566b8ec5ba6ed95fbb6 | p2@Il6 |
| 7.35e-53 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_119c9221b70de566b8ec5ba6ed95fbb6 | p2@Il6 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:35238792..35238801,-#_3f4b95263032e169f589c5bcadc14cf3 | p@chr7:35238792..35238801, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:61929910..61929917,+#_3f4b95263032e169f589c5bcadc14cf3 | p60@PRKCH |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:61929910..61929917,+#_3f4b95263032e169f589c5bcadc14cf3 | p60@PRKCH |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:35238792..35238801,-#_3f4b95263032e169f589c5bcadc14cf3 | p@chr7:35238792..35238801, - |
| 4.0e-50 | FFCP PHASE2:Hg19::chrX:131545245..131545250,-#_66a4bdcfcb59f92c54a20f0541b79289 | p32@MBNL3 |
| 4.0e-50 | FFCP PHASE1:Hg19::chrX:131545245..131545250,-#_66a4bdcfcb59f92c54a20f0541b79289 | p32@MBNL3 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr18:19769123..19769149,+#_b76f6bcb192fdd7c0c87eab1853767e8 | p@chr18:19769123..19769149, + |
| 6.6e-50 | FFCP PHASE1:Hg19::chr18:19769123..19769149,+#_b76f6bcb192fdd7c0c87eab1853767e8 | p@chr18:19769123..19769149, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr19:20567168..20567179,+#_d615ab61e61d1a304e53e77b5af2c7d3 | p5@E030003E18Rik |
| 1.18e-44 | FFCP PHASE1:Mm9::chr8:11449034..11449045,+#_d615ab61e61d1a304e53e77b5af2c7d3 | p@chr8:11449034..11449045, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr19:20567168..20567179,+#_d615ab61e61d1a304e53e77b5af2c7d3 | p5@E030003E18Rik |
| 1.18e-44 | FFCP PHASE2:Mm9::chr8:11449034..11449045,+#_d615ab61e61d1a304e53e77b5af2c7d3 | p@chr8:11449034..11449045, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr11:61392754..61392766,-#_f50714a520e3d30fac3fb9751b552ae7 | p@chr11:61392754..61392766, - |
| 1.66e-44 | FFCP PHASE2:Mm9::chr11:61392754..61392766,-#_f50714a520e3d30fac3fb9751b552ae7 | p@chr11:61392754..61392766, - |
| 3.27e-44 | FFCP PHASE2:Mm9::chr3:103792260..103792309,+#_d5736e9aa5e68a2113e79ea45c4cf89f | p@chr3:103792260..103792309, + |
| 3.27e-44 | FFCP PHASE1:Mm9::chr3:103792260..103792309,+#_d5736e9aa5e68a2113e79ea45c4cf89f | p@chr3:103792260..103792309, + |
| 8.97e-44 | FFCP PHASE2:Mm9::chr5:93362343..93362363,+#_fe6f16fe8c481a3a25e08361b2e91c91 | p@chr5:93362343..93362363, + |
| 8.97e-44 | FFCP PHASE1:Mm9::chr5:93362343..93362363,+#_fe6f16fe8c481a3a25e08361b2e91c91 | p@chr5:93362343..93362363, + |
| 2.45e-43 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_c6ba2330f118a1fe7330de19c64800e9 | p@chrX:160838683..160838694, + |
| 2.45e-43 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_c6ba2330f118a1fe7330de19c64800e9 | p@chrX:160838683..160838694, + |
| 2.22e-40 | FFCP PHASE2:Hg19::chrX:131545301..131545315,-#_cda8b2eb36402e56fd649cf8e3d0d3a6 | p22@MBNL3 |
| 2.22e-40 | FFCP PHASE1:Hg19::chrX:131545301..131545315,-#_cda8b2eb36402e56fd649cf8e3d0d3a6 | p22@MBNL3 |
| 2.71e-40 | FFCP PHASE2:Hg19::chr4:2869695..2869706,+#_4581d3eae2ab2f9da72e6720154caf10 | p30@ADD1 |
| 2.71e-40 | FFCP PHASE1:Hg19::chr4:2869695..2869706,+#_4581d3eae2ab2f9da72e6720154caf10 | p30@ADD1 |
| 1.7e-39 | FFCP PHASE2:Mm9::chr8:125956526..125956533,-#_88575cd14e6aadba9ee30b9f3ea204ab | p@chr8:125956526..125956533, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr8:125956526..125956533,-#_88575cd14e6aadba9ee30b9f3ea204ab | p@chr8:125956526..125956533, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr8:125952865..125952872,-#_b2d8ce2b4f7b8eca1bc279b822e78a99 | p@chr8:125952865..125952872, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr8:125952865..125952872,-#_b2d8ce2b4f7b8eca1bc279b822e78a99 | p@chr8:125952865..125952872, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr15:76984103..76984104,-#_b2d8ce2b4f7b8eca1bc279b822e78a99 | p18@Rbfox2 |
| 2.66e-39 | FFCP PHASE2:Mm9::chr15:76984103..76984104,-#_b2d8ce2b4f7b8eca1bc279b822e78a99 | p18@Rbfox2 |
| 4.15e-39 | FFCP PHASE1:Mm9::chr7:117927007..117927010,+#_2c76e7a1a2b6e40d3346c63222f68c91 | p@chr7:117927007..117927010, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr7:117927007..117927010,+#_2c76e7a1a2b6e40d3346c63222f68c91 | p@chr7:117927007..117927010, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr6:91202567..91202570,+#_2c76e7a1a2b6e40d3346c63222f68c91 | p@chr6:91202567..91202570, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr6:91202567..91202570,+#_2c76e7a1a2b6e40d3346c63222f68c91 | p@chr6:91202567..91202570, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr6:91184012..91184021,+#_5c27ca52091a0890f0387d3d0fa1e904 | p@chr6:91184012..91184021, + |
| 1.17e-38 | FFCP PHASE2:Mm9::chr6:91184012..91184021,+#_5c27ca52091a0890f0387d3d0fa1e904 | p@chr6:91184012..91184021, + |
| 1.56e-38 | FFCP PHASE2:Mm9::chr16:58465599..58465600,+#_0f4671e0826e42a72964171089bdba9b | p@chr16:58465599..58465600, + |
| 1.56e-38 | FFCP PHASE1:Mm9::chr16:58465599..58465600,+#_0f4671e0826e42a72964171089bdba9b | p@chr16:58465599..58465600, + |
| 2.79e-38 | FFCP PHASE1:Mm9::chr4:141154145..141154160,-#_c174867efc52e6b91660ef08a07f4b73 | p6@Fblim1 |
| 2.79e-38 | FFCP PHASE2:Mm9::chr4:141154145..141154160,-#_c174867efc52e6b91660ef08a07f4b73 | p6@Fblim1 |
| 3.73e-38 | FFCP PHASE2:Mm9::chr3:54920096..54920117,+#_315e9f89ff873f738e1a39ff66b8bf89 | p7@Spg20 |
| 3.73e-38 | FFCP PHASE1:Mm9::chr3:54920096..54920117,+#_315e9f89ff873f738e1a39ff66b8bf89 | p7@Spg20 |
| 6.64e-38 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_374d199820558ddfc8bbce11aab88ee3 | p@chr12:105433069..105433075, - |
| 6.64e-38 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_374d199820558ddfc8bbce11aab88ee3 | p@chr12:105433069..105433075, - |
| 8.86e-38 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_2eac022bea974c66acb3e56e7a9b26e8 | p@chrX:65748600..65748616, + |
| 8.86e-38 | FFCP PHASE1:Mm9::chr18:61220910..61220912,+#_2eac022bea974c66acb3e56e7a9b26e8 | p@chr18:61220910..61220912, + |
| 8.86e-38 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_2eac022bea974c66acb3e56e7a9b26e8 | p@chrX:65748600..65748616, + |
| 8.86e-38 | FFCP PHASE2:Mm9::chr18:61220910..61220912,+#_2eac022bea974c66acb3e56e7a9b26e8 | p@chr18:61220910..61220912, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr7:19425360..19425369,+#_e657374b0031f42a71985e726f837b52 | p2@Mill2 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_e657374b0031f42a71985e726f837b52 | p@chr6:91222095..91222107, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_e657374b0031f42a71985e726f837b52 | p@chr6:91222095..91222107, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr7:19425360..19425369,+#_e657374b0031f42a71985e726f837b52 | p2@Mill2 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:91183490..91183501,+#_e657374b0031f42a71985e726f837b52 | p@chr6:91183490..91183501, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:91183490..91183501,+#_e657374b0031f42a71985e726f837b52 | p@chr6:91183490..91183501, + |
| 7.89e-34 | FFCP PHASE1:Mm9::chr5:137542830..137542841,-#_54ad5f2536716d96c4f36c701657a308 | p@chr5:137542830..137542841, - |
| 7.89e-34 | FFCP PHASE2:Mm9::chr5:137542830..137542841,-#_54ad5f2536716d96c4f36c701657a308 | p@chr5:137542830..137542841, - |
| 1.17e-33 | FFCP PHASE1:Hg19::chr14:61929802..61929817,+#_02c3b06f3393a388b5abf6c6cb4c6a58 | p35@PRKCH |
| 1.17e-33 | FFCP PHASE2:Hg19::chr14:61929802..61929817,+#_02c3b06f3393a388b5abf6c6cb4c6a58 | p35@PRKCH |
| 1.17e-33 | FFCP PHASE2:Hg19::chrX:47895575..47895589,+#_02c3b06f3393a388b5abf6c6cb4c6a58 | p@chrX:47895575..47895589, + |
| 1.17e-33 | FFCP PHASE1:Hg19::chrX:47895575..47895589,+#_02c3b06f3393a388b5abf6c6cb4c6a58 | p@chrX:47895575..47895589, + |
| 3.6e-33 | FFCP PHASE1:Hg19::chr7:30792938..30792970,+#_f9a48a379df1a65e04254686c8677f6a | p@chr7:30792938..30792970, + |
| 3.6e-33 | FFCP PHASE2:Hg19::chr7:30792938..30792970,+#_f9a48a379df1a65e04254686c8677f6a | p@chr7:30792938..30792970, + |
| 3.61e-33 | FFCP PHASE1:Mm9::chr5:77778263..77778301,+#_27d77a879f9d13e0cae63262dccb9bfd | p@chr5:77778263..77778301, + |
| 3.61e-33 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_27d77a879f9d13e0cae63262dccb9bfd | p@chr11:81849982..81850000, + |
| 3.61e-33 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_27d77a879f9d13e0cae63262dccb9bfd | p@chr11:81849982..81850000, + |
| 3.61e-33 | FFCP PHASE2:Mm9::chr5:77778263..77778301,+#_27d77a879f9d13e0cae63262dccb9bfd | p@chr5:77778263..77778301, + |
| 5.97e-33 | FFCP PHASE2:Mm9::chr16:37834682..37834693,+#_43e36a3ec563ca87c2585d79bd49d1c8 | p@chr16:37834682..37834693, + |
| 5.97e-33 | FFCP PHASE1:Mm9::chr16:37834682..37834693,+#_43e36a3ec563ca87c2585d79bd49d1c8 | p@chr16:37834682..37834693, + |
| 7.68e-33 | FFCP PHASE2:Mm9::chr13:5863732..5863743,+#_40ea2dcfeded0169c2d84d3bd0c2f9a6 | p@chr13:5863732..5863743, + |
| 7.68e-33 | FFCP PHASE1:Mm9::chr3:88420206..88420215,+#_40ea2dcfeded0169c2d84d3bd0c2f9a6 | p18@Arhgef2 |
| 7.68e-33 | FFCP PHASE1:Mm9::chr13:5863732..5863743,+#_40ea2dcfeded0169c2d84d3bd0c2f9a6 | p@chr13:5863732..5863743, + |
| 7.68e-33 | FFCP PHASE2:Mm9::chr3:88420206..88420215,+#_40ea2dcfeded0169c2d84d3bd0c2f9a6 | p18@Arhgef2 |
| 2.03e-32 | FFCP PHASE2:Hg19::chr11:117152313..117152356,+#_3b6eed4fef49f3a6946792b7e9d86f39 | p4@RNF214 |
| 2.03e-32 | FFCP PHASE1:Hg19::chr11:117152313..117152356,+#_3b6eed4fef49f3a6946792b7e9d86f39 | p4@RNF214 |
