FFCP PHASE1:Mm9::chr4:6421389..6421416,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=58 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:6421389..6421416,- | |||
|description=CAGE_peak_at_chr4:6421389..6421416,- | |description=CAGE_peak_at_chr4:6421389..6421416,- | ||
|id=chr4:6421389..6421416,- | |id=chr4:6421389..6421416,- | ||
|ontology_enrichment_celltype=CL:0000473!2.71e-12!3;CL:0000627!2.71e-12!3;CL:0000682!2.71e-12!3;CL:0000239!2.11e-10!6;CL:0000677!2.11e-10!6;CL:0000212!2.11e-10!6;CL:0000584!2.11e-10!6;CL:0000075!6.35e-09!7;CL:0002563!6.02e-07!9;CL:0002251!6.02e-07!9 | |ontology_enrichment_celltype=CL:0000473!2.71e-12!3;CL:0000627!2.71e-12!3;CL:0000682!2.71e-12!3;CL:0000239!2.11e-10!6;CL:0000677!2.11e-10!6;CL:0000212!2.11e-10!6;CL:0000584!2.11e-10!6;CL:0000075!6.35e-09!7;CL:0002563!6.02e-07!9;CL:0002251!6.02e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000682,5.70e-27,3;CL:0000239,2.44e-23,6;CL:0000677,2.44e-23,6;CL:0000584,2.44e-23,6;CL:0000075,4.48e-20,7;CL:0000066,8.13e-17,25;CL:0002563,1.03e-15,9;CL:0002251,1.03e-15,9;CL:0000473,5.73e-12,7;CL:0002076,1.41e-09,15;CL:0000223,2.96e-07,20 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!4.18e-23!23;UBERON:0000974!4.18e-23!23;UBERON:0004807!4.18e-23!23;UBERON:0005058!4.18e-23!23;UBERON:0003351!4.18e-23!23;UBERON:0009113!4.18e-23!23;UBERON:0003295!4.18e-23!23;UBERON:0009722!4.18e-23!23;UBERON:0005562!4.18e-23!23;UBERON:0007690!4.18e-23!23;UBERON:0006562!4.80e-22!24;UBERON:0003408!4.80e-22!24;UBERON:0001557!4.80e-22!24;UBERON:0001042!4.80e-22!24;UBERON:0008814!4.80e-22!24;UBERON:0009145!4.80e-22!24;UBERON:0000072!2.46e-19!27;UBERON:0004177!7.71e-18!29;UBERON:0003929!1.70e-15!55;UBERON:0000063!2.24e-14!35;UBERON:0002193!8.71e-14!48;UBERON:0000490!2.23e-12!66;UBERON:0000065!6.30e-12!41;UBERON:0000344!7.29e-12!15;UBERON:0005911!1.06e-11!69;UBERON:0001004!1.38e-11!42;UBERON:0000064!5.53e-11!99;UBERON:0002390!1.17e-10!45;UBERON:0003061!1.17e-10!45;UBERON:0005057!3.98e-09!51;UBERON:0001962!5.38e-09!2;UBERON:0001961!5.38e-09!2;UBERON:0001744!5.38e-09!2;UBERON:0002405!1.44e-08!70;UBERON:0001007!1.22e-07!128;UBERON:0001555!1.22e-07!128;UBERON:0007026!1.22e-07!128;UBERON:0004119!1.83e-07!130;UBERON:0000925!1.83e-07!130;UBERON:0006595!1.83e-07!130;UBERON:0002368!2.09e-07!60;UBERON:0001242!3.61e-07!13;UBERON:0000060!3.61e-07!13;UBERON:0001262!3.61e-07!13;UBERON:0004786!3.61e-07!13;UBERON:0004923!4.62e-07!24;UBERON:0003350!6.02e-07!9;UBERON:0004808!6.02e-07!9;UBERON:0001277!6.02e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.34e-28,15;UBERON:0001962,3.79e-19,2;UBERON:0001961,3.79e-19,2;UBERON:0001744,3.79e-19,2;UBERON:0004923,1.12e-17,24;UBERON:0001242,9.19e-17,13;UBERON:0001262,9.19e-17,13;UBERON:0004786,9.19e-17,13;UBERON:0003350,1.03e-15,9;UBERON:0004808,1.03e-15,9;UBERON:0001277,1.03e-15,9;UBERON:0002465,4.20e-13,3;UBERON:0000485,6.25e-13,11;UBERON:0003199,1.63e-10,1;UBERON:0000160,4.40e-07,31 | |||
|phase1_expression=0,2.79180326111489,2.72999543633722,0,0,6.04365378882803,3.03696432774183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,5.27974995218242,6.19405058881359,4.01962374880514,4.30761996159075,3.878482188346,0,0,3.99114919179548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.102710957164827,0.51968329191118,0.358053391334963,0.198681354781265,0.480781798079875,0.443068581523732,0.100966449948148,0.457240839929999,0.504130925684203,0.194915761479505,0.384847366561318,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,2.79180326111489,2.72999543633722,0,0,6.04365378882803,3.03696432774183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,5.27974995218242,6.19405058881359,4.01962374880514,4.30761996159075,3.878482188346,0,0,3.99114919179548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.102710957164827,0.51968329191118,0.358053391334963,0.198681354781265,0.480781798079875,0.443068581523732,0.100966449948148,0.457240839929999,0.504130925684203,0.194915761479505,0.384847366561318,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:6421389..6421416,- | |short_description=p@chr4:6421389..6421416,- | ||
}} | }} |
Latest revision as of 16:58, 5 August 2015
Short description: | p@chr4:6421389..6421416, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:6421389..6421416, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 5.70e-27 | 3 |
brush border epithelial cell | 2.44e-23 | 6 |
gut absorptive cell | 2.44e-23 | 6 |
enterocyte | 2.44e-23 | 6 |
columnar/cuboidal epithelial cell | 4.48e-20 | 7 |
epithelial cell | 8.13e-17 | 25 |
intestinal epithelial cell | 1.03e-15 | 9 |
epithelial cell of alimentary canal | 1.03e-15 | 9 |
defensive cell | 5.73e-12 | 7 |
endo-epithelial cell | 1.41e-09 | 15 |
endodermal cell | 2.96e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.34e-28 | 15 |
gut-associated lymphoid tissue | 3.79e-19 | 2 |
mucosa-associated lymphoid tissue | 3.79e-19 | 2 |
lymphoid tissue | 3.79e-19 | 2 |
organ component layer | 1.12e-17 | 24 |
intestinal mucosa | 9.19e-17 | 13 |
wall of intestine | 9.19e-17 | 13 |
gastrointestinal system mucosa | 9.19e-17 | 13 |
epithelium of mucosa | 1.03e-15 | 9 |
gastrointestinal system epithelium | 1.03e-15 | 9 |
intestinal epithelium | 1.03e-15 | 9 |
lymphoid system | 4.20e-13 | 3 |
simple columnar epithelium | 6.25e-13 | 11 |
egg chamber | 1.63e-10 | 1 |
intestine | 4.40e-07 | 31 |