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|xref=ncithesaurus:Spinal_Cord_Part;;NIF_GrossAnatomy:birnlex_1496;;SCTID:244437008
|xref=ncithesaurus:Spinal_Cord_Part;;NIF_GrossAnatomy:birnlex_1496;;SCTID:244437008
|is_a=UBERON:0000073
|is_a=UBERON:0000073
|synonym="spinal cord part" RELATED [];;"spinal neuromere" RELATED [];;"spinal neuromeres" RELATED []
|synonym="spinal cord part" RELATED []
|comment=
|comment=
|alt_id=UBERON:FMA_62420-ZFA_0001332
|alt_id=UBERON:FMA_62420-ZFA_0001332
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|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002240
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:00, 26 June 2012

Name:regional part of spinal cord
Xrefs:
links:

ncithesaurus:Spinal_Cord_Part
NIF_GrossAnatomy:birnlex_1496

SCTID:244437008
Synonyms: "spinal cord part" RELATED []
Alt_id: UBERON:FMA_62420-ZFA_0001332
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000073(regional part of nervous system)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001948 (regional part of spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.4e-86FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_466e9453442503bf5e7ea64773733216p@chr11:96608388..96608420, +
1.4e-86FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_466e9453442503bf5e7ea64773733216p@chr11:96608388..96608420, +
1.4e-86FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_466e9453442503bf5e7ea64773733216p3@Prrxl1
1.4e-86FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_466e9453442503bf5e7ea64773733216p@chr18:84268738..84268777, -
1.4e-86FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_466e9453442503bf5e7ea64773733216p@chr18:84268738..84268777, -
1.4e-86FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_466e9453442503bf5e7ea64773733216p3@Prrxl1
2.95e-72FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_0d05651f495b354626150f2bacce439ep6@Hoxb8
2.95e-72FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_0d05651f495b354626150f2bacce439ep6@Hoxb8
1.65e-69FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_339f1640951bea8055044a11a6321142p13@Grm5
1.65e-69FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_339f1640951bea8055044a11a6321142p@chr11:96148092..96148105, +
1.65e-69FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_339f1640951bea8055044a11a6321142p13@Grm5
1.65e-69FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_339f1640951bea8055044a11a6321142p@chr11:96148092..96148105, +
8.93e-63FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_ce07a7774dbeb6cd12427b74da512803p8@Hoxb6
8.93e-63FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_ce07a7774dbeb6cd12427b74da512803p@chr2:74530108..74530131, +
8.93e-63FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_ce07a7774dbeb6cd12427b74da512803p8@Hoxb6
8.93e-63FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_ce07a7774dbeb6cd12427b74da512803p@chr2:74530108..74530131, +
2.13e-62FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_82a4109a92400f72bf4196866c6b471dp5@Hoxd10
2.13e-62FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_82a4109a92400f72bf4196866c6b471dp5@Hoxd10
5.81e-56FFCP PHASE2:Mm9::chr5:77527885..77527900,+#_3dd0c4180d04159e450fc84c827a1ef7p@chr5:77527885..77527900, +
5.81e-56FFCP PHASE1:Mm9::chr5:77527885..77527900,+#_3dd0c4180d04159e450fc84c827a1ef7p@chr5:77527885..77527900, +
1.11e-55FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_a3ba9d4478032e261c9f81081359f258p@chr2:70053872..70053879, +
1.11e-55FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_a3ba9d4478032e261c9f81081359f258p@chr2:70053872..70053879, +
3.21e-55FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_15a1611867852ccf5a32bacede08de80p4@Hoxb9
3.21e-55FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_15a1611867852ccf5a32bacede08de80p4@Hoxb9
1.11e-53FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_f5ffda1ce8f1dbe5960d4bfbe82eafa7p6@Slc6a5
1.11e-53FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_f5ffda1ce8f1dbe5960d4bfbe82eafa7p6@Slc6a5
1.54e-49FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_1baf3af639f4fda8d1e1016706ef8686p3@Tlx3
1.54e-49FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_1baf3af639f4fda8d1e1016706ef8686p3@Tlx3
1.94e-49FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_8b51807d2c3000fd153b41269eee35fdp@chr11:96146541..96146544, +
1.94e-49FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_8b51807d2c3000fd153b41269eee35fdp@chr11:96146541..96146544, +
6.02e-49FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_34e9f5d6512f64f85db39fd95dc47310p1@Uts2
6.02e-49FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_34e9f5d6512f64f85db39fd95dc47310p1@Uts2
6.67e-45FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_fd6e9aea1a83f47bb675afd9c8162985p@chr2:70399563..70399583, +
6.67e-45FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_fd6e9aea1a83f47bb675afd9c8162985p1@Gbx1
6.67e-45FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_fd6e9aea1a83f47bb675afd9c8162985p1@Gbx1
6.67e-45FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_fd6e9aea1a83f47bb675afd9c8162985p@chr2:70399563..70399583, +
1.42e-43FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_f04145fff659a358575569e31525c294p3@Slc6a5
1.42e-43FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_f04145fff659a358575569e31525c294p3@Slc6a5
8.78e-41FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_623291f7edd16719cd16fd838a9ff44cp12@6330527O06Rik
8.78e-41FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_623291f7edd16719cd16fd838a9ff44cp12@6330527O06Rik
1.06e-40FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_08533f46f0263997ef94c824b1d8cb42p1@Npff
1.06e-40FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_08533f46f0263997ef94c824b1d8cb42p1@Npff
2.23e-40FFCP PHASE1:Mm9::chr2:135885511..135885540,+#_1aac4ba83426e5a31a5a264f2f35e13ap@chr2:135885511..135885540, +
2.23e-40FFCP PHASE2:Mm9::chr2:135885511..135885540,+#_1aac4ba83426e5a31a5a264f2f35e13ap@chr2:135885511..135885540, +
2.32e-40FFCP PHASE2:Mm9::chr11:32036107..32036145,-#_df5221000b59c106272d978ba0b2a736p@chr11:32036107..32036145, -
2.32e-40FFCP PHASE1:Mm9::chr11:32036107..32036145,-#_df5221000b59c106272d978ba0b2a736p@chr11:32036107..32036145, -
5.63e-40FFCP PHASE1:Mm9::chr7:57165576..57165593,+#_b4a105577c7451f6f2c75d7f322b73ebp5@Slc6a5
5.63e-40FFCP PHASE2:Mm9::chr7:57165576..57165593,+#_b4a105577c7451f6f2c75d7f322b73ebp5@Slc6a5
8.14e-40FFCP PHASE1:Mm9::chr7:57165629..57165651,+#_67cfe5c66fd5835d4e9ab027b839dc23p4@Slc6a5
8.14e-40FFCP PHASE2:Mm9::chr7:57165629..57165651,+#_67cfe5c66fd5835d4e9ab027b839dc23p4@Slc6a5
9.85e-40FFCP PHASE2:Mm9::chr1:173090774..173090783,+#_54fa7b1ae1b4c6b71688665a495d8b51p@chr1:173090774..173090783, +
9.85e-40FFCP PHASE1:Mm9::chr1:173090774..173090783,+#_54fa7b1ae1b4c6b71688665a495d8b51p@chr1:173090774..173090783, +
3.99e-37FFCP PHASE2:Mm9::chr14:14286451..14286466,+#_78772f19eb40266ce13aa8ed4af193c2p8@Synpr
3.99e-37FFCP PHASE1:Mm9::chr14:14286451..14286466,+#_78772f19eb40266ce13aa8ed4af193c2p8@Synpr
7.88e-37FFCP PHASE2:Mm9::chr7:57167425..57167443,+#_aab84c2b399b906aa3dad4adc0a5fc20p@chr7:57167425..57167443, +
7.88e-37FFCP PHASE2:Mm9::chr7:133967338..133967349,+#_aab84c2b399b906aa3dad4adc0a5fc20p@chr7:133967338..133967349, +
7.88e-37FFCP PHASE1:Mm9::chr7:133967338..133967349,+#_aab84c2b399b906aa3dad4adc0a5fc20p@chr7:133967338..133967349, +
7.88e-37FFCP PHASE1:Mm9::chr7:57167425..57167443,+#_aab84c2b399b906aa3dad4adc0a5fc20p@chr7:57167425..57167443, +
1.3e-35FFCP PHASE1:Mm9::chr19:46407266..46407281,-#_7ae03b15b80f63471c5f94e905d71e9fp@chr19:46407266..46407281, -
1.3e-35FFCP PHASE2:Mm9::chr19:46407266..46407281,-#_7ae03b15b80f63471c5f94e905d71e9fp@chr19:46407266..46407281, -
1.42e-35FFCP PHASE2:Mm9::chr5:23665663..23665666,+#_5705b7f282c3f8e0a2db545fb94ef5bdp@chr5:23665663..23665666, +
1.42e-35FFCP PHASE1:Mm9::chr5:23665663..23665666,+#_5705b7f282c3f8e0a2db545fb94ef5bdp@chr5:23665663..23665666, +
8.04e-35FFCP PHASE2:Mm9::chr13:33175964..33175973,+#_8bc262c664a670358e7ffe6b19406ca9p2@Serpinb1b
8.04e-35FFCP PHASE1:Mm9::chr13:33175964..33175973,+#_8bc262c664a670358e7ffe6b19406ca9p2@Serpinb1b
1.65e-34FFCP PHASE2:Mm9::chr7:144505876..144505884,-#_5fe79acc7121a5bf2f9ae76240e126a3p9@Ebf3
1.65e-34FFCP PHASE1:Mm9::chr7:144505876..144505884,-#_5fe79acc7121a5bf2f9ae76240e126a3p9@Ebf3
3.63e-34FFCP PHASE1:Mm9::chr11:89638991..89639011,-#_e8c83b4da12fecea7c7504d60b33b323p1@uc007kwk.1
3.63e-34FFCP PHASE2:Mm9::chr11:89638991..89639011,-#_e8c83b4da12fecea7c7504d60b33b323p1@uc007kwk.1
7.66e-33FFCP PHASE2:Mm9::chr11:96160119..96160135,+#_d88a2d85397d8153bea68dc8ef3147d4p7@Hoxb6
7.66e-33FFCP PHASE1:Mm9::chr11:96160119..96160135,+#_d88a2d85397d8153bea68dc8ef3147d4p7@Hoxb6
1.2e-32FFCP PHASE1:Mm9::chr11:33103600..33103611,-#_c4594ce049ce1e29997c919d0113fae3p2@Tlx3
1.2e-32FFCP PHASE2:Mm9::chr11:33103600..33103611,-#_c4594ce049ce1e29997c919d0113fae3p2@Tlx3
1.86e-32FFCP PHASE1:Mm9::chr11:96144337..96144354,+#_849b5cc2c0f92f5e6316564b954a7110p@chr11:96144337..96144354, +
1.86e-32FFCP PHASE2:Mm9::chr11:96144337..96144354,+#_849b5cc2c0f92f5e6316564b954a7110p@chr11:96144337..96144354, +
2.16e-32FFCP PHASE2:Mm9::chr15:102767273..102767285,+#_a075e4a38ad51fc497dc3e89bdf4a53dp2@Hoxc12
2.16e-32FFCP PHASE1:Mm9::chr15:102767273..102767285,+#_a075e4a38ad51fc497dc3e89bdf4a53dp2@Hoxc12
2.5e-32FFCP PHASE1:Mm9::chr10:57505309..57505327,+#_5ea5a4d648fb4b046f85e52c7bf754b2p@chr10:57505309..57505327, +
2.5e-32FFCP PHASE2:Mm9::chr10:57505309..57505327,+#_5ea5a4d648fb4b046f85e52c7bf754b2p@chr10:57505309..57505327, +
3.68e-32FFCP PHASE1:Mm9::chr12:47797986..47798011,-#_f43786370002728857d0ba47157257f7p@chr12:47797986..47798011, -
3.68e-32FFCP PHASE2:Mm9::chr12:47797986..47798011,-#_f43786370002728857d0ba47157257f7p@chr12:47797986..47798011, -
5.98e-32FFCP PHASE2:Mm9::chr10:101630272..101630276,+#_ebf3927d2ea5cdc7123034417337f02ep@chr10:101630272..101630276, +
5.98e-32FFCP PHASE1:Mm9::chr10:101630272..101630276,+#_ebf3927d2ea5cdc7123034417337f02ep@chr10:101630272..101630276, +
7.61e-32FFCP PHASE2:Mm9::chr11:33103551..33103561,-#_e570fab8427b17a9bcc321084ef53a2ep4@Tlx3
7.61e-32FFCP PHASE1:Mm9::chr11:33103551..33103561,-#_e570fab8427b17a9bcc321084ef53a2ep4@Tlx3
9.32e-32FFCP PHASE1:Mm9::chr19:46407289..46407300,-#_46e66abbd6b079d42fb85278769649c3p@chr19:46407289..46407300, -
9.32e-32FFCP PHASE2:Mm9::chr19:46407289..46407300,-#_46e66abbd6b079d42fb85278769649c3p@chr19:46407289..46407300, -
1.45e-31FFCP PHASE1:Mm9::chr15:99602962..99602973,-#_ff56ed71d4e7ea2dd777cbbfa496605dp4@Lass5
1.45e-31FFCP PHASE2:Mm9::chr15:99602962..99602973,-#_ff56ed71d4e7ea2dd777cbbfa496605dp4@Lass5
1.67e-31FFCP PHASE1:Mm9::chr1:136543278..136543288,+#_7db5f35a7245d2ecc34fb0f37c13fb30p5@Syt2
1.67e-31FFCP PHASE2:Mm9::chr1:136543278..136543288,+#_7db5f35a7245d2ecc34fb0f37c13fb30p5@Syt2
6.4e-31FFCP PHASE1:Mm9::chr15:102802660..102802666,+#_501be3160691e6eb7e1a9c35522d57a9p@chr15:102802660..102802666, +
6.4e-31FFCP PHASE2:Mm9::chr15:102802660..102802666,+#_501be3160691e6eb7e1a9c35522d57a9p@chr15:102802660..102802666, +
8.45e-31FFCP PHASE2:Mm9::chr6:8898608..8898619,+#_867e515b3ca696dfaf497ca86c9d1995p18@Nxph1
8.45e-31FFCP PHASE1:Mm9::chr6:8898608..8898619,+#_867e515b3ca696dfaf497ca86c9d1995p18@Nxph1
1.12e-30FFCP PHASE2:Mm9::chr3:88004192..88004201,+#_fa4d0e8b2b278b87cf5f4d9d4c51583dp8@ENSMUST00000167043
1.12e-30FFCP PHASE1:Mm9::chr3:88004192..88004201,+#_fa4d0e8b2b278b87cf5f4d9d4c51583dp8@ENSMUST00000167043
1.12e-30FFCP PHASE2:Mm9::chr13:6597624..6597628,-#_fa4d0e8b2b278b87cf5f4d9d4c51583dp2@Pfkp
1.12e-30FFCP PHASE1:Mm9::chr13:6597624..6597628,-#_fa4d0e8b2b278b87cf5f4d9d4c51583dp2@Pfkp
1.94e-30FFCP PHASE1:Mm9::chr7:57165482..57165497,+#_601bd6003e378bfc08eb257fe09ec040p2@Slc6a5
1.94e-30FFCP PHASE1:Mm9::chr16:7039662..7039675,+#_601bd6003e378bfc08eb257fe09ec040p@chr16:7039662..7039675, +

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