Personal tools

UBERON:0005358: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|def=
|def=
|xref=FMA:242770
|xref=FMA:242770
|is_a=UBERON:0000073;;UBERON:0002300
|is_a=UBERON:0004121
|synonym="Region of wall of ventricular system of neuraxis" EXACT [FMA:242770]
|synonym="Region of wall of ventricular system of neuraxis" EXACT [FMA:242770]
|comment=
|comment=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001016
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:06, 26 June 2012

Name:ventricle of nervous system
Xrefs:
links:
FMA:242770
Synonyms: "Region of wall of ventricular system of neuraxis" EXACT [FMA:242770]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004121(ectoderm-derived structure)



Children

is a:UBERON:0004086 (brain ventricle)
part of:UBERON:0005283 (tela choroidea)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005358 (ventricle of nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_4fe15be917483f7ec02a6d30cbd2fa07p58@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_4fe15be917483f7ec02a6d30cbd2fa07p58@NAV1
3.29e-195FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_4fe15be917483f7ec02a6d30cbd2fa07p55@NAV1
3.29e-195FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_4fe15be917483f7ec02a6d30cbd2fa07p55@NAV1
8.99e-131FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_57329450699578ea6dec1fca6713422fp@chr8:24997361..24997368, -
8.99e-131FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_57329450699578ea6dec1fca6713422fp@chr8:24997361..24997368, -
3.96e-66FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_cb38fde2cdab92a49157aa2dc7cc0109p73@SEPT9
3.96e-66FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_cb38fde2cdab92a49157aa2dc7cc0109p73@SEPT9
3.96e-66FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_cb38fde2cdab92a49157aa2dc7cc0109p@chr3:146517344..146517356, +
3.96e-66FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_cb38fde2cdab92a49157aa2dc7cc0109p@chr3:146517344..146517356, +
4.77e-57FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_3167fbf8662cad8875ee4c4b7e75b303p@chr12:15941738..15941768, +
4.77e-57FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_3167fbf8662cad8875ee4c4b7e75b303p@chr12:15941738..15941768, +
6.36e-57FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_b9cde97afcead35d2ec59d1c7113bb3cp@chr5:149537789..149537803, -
6.36e-57FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_b9cde97afcead35d2ec59d1c7113bb3cp@chr5:149537789..149537803, -
8.82e-51FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_abd78c66292632d16235b2093ac5709cp7@FLVCR2
8.82e-51FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_abd78c66292632d16235b2093ac5709cp7@OBFC1
8.82e-51FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_abd78c66292632d16235b2093ac5709cp7@OBFC1
8.82e-51FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_abd78c66292632d16235b2093ac5709cp7@FLVCR2
5.15e-50FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_f2aac2dfda5d348cb8b16f81719d2958p@chr16:65159735..65159744, -
5.15e-50FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_f2aac2dfda5d348cb8b16f81719d2958p@chr16:65159735..65159744, -
1.22e-44FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_e27460301ed181452685dea79f8c6e0dp20@EBF1
1.22e-44FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_e27460301ed181452685dea79f8c6e0dp20@EBF1
1.53e-44FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_acb6a7aeb76710c12c7fc21836c34a0cp@chr11:60680190..60680212, +
1.53e-44FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_acb6a7aeb76710c12c7fc21836c34a0cp@chr11:60680190..60680212, +
5.99e-41FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_4c6bae3bf68623117ad2311eca417e14p7@METTL11A
5.99e-41FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_4c6bae3bf68623117ad2311eca417e14p7@METTL11A
8.98e-41FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_33495049a5098186cb289f28dcf9170ap@chr1:19778678..19778689, -
8.98e-41FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_33495049a5098186cb289f28dcf9170ap@chr1:19778678..19778689, -
1.34e-40FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_0cf78a4ea60b3c8d6db419e8d8f7d6c5p8@ENPEP
1.34e-40FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_0cf78a4ea60b3c8d6db419e8d8f7d6c5p8@ENPEP
9.84e-37FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_8bcb00e21b8305b5f952151f259bb357p3@ALX4
9.84e-37FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_8bcb00e21b8305b5f952151f259bb357p3@ALX4
1.18e-36FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_a92625bcf7dc2bc94b985efc0ed79588p@chr1:236203048..236203055, -
1.18e-36FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_a92625bcf7dc2bc94b985efc0ed79588p@chr1:236203048..236203055, -
1.42e-36FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_1c2febe9d4d8918757501f76a060d304p20@RIMS1
1.42e-36FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_1c2febe9d4d8918757501f76a060d304p20@RIMS1
1.7e-36FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_fc1bf1a20ff636186c8a277a194139dbp@chr14:87636652..87636657, -
1.7e-36FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_fc1bf1a20ff636186c8a277a194139dbp@chr14:87636652..87636657, -
2.04e-36FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_ee2aa802aaeca06638d7d40a383fc810p30@PRKCH
2.04e-36FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_ee2aa802aaeca06638d7d40a383fc810p30@PRKCH
1.11e-34FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_ea0b940d45bd93df6c14886dac4bba8bp5@CMKLR1
1.11e-34FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_ea0b940d45bd93df6c14886dac4bba8bp5@CMKLR1
5.04e-34FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_e89b76514498bb29c55fb597c26cc39ap11@SLC25A25
5.04e-34FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_e89b76514498bb29c55fb597c26cc39ap11@SLC25A25
7.05e-34FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_69632efdc3b5b0652412ed2dcbf2bec4p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_69632efdc3b5b0652412ed2dcbf2bec4p11@HTR2B
7.05e-34FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_69632efdc3b5b0652412ed2dcbf2bec4p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_69632efdc3b5b0652412ed2dcbf2bec4p@chr6:36906253..36906260, -
7.05e-34FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_69632efdc3b5b0652412ed2dcbf2bec4p11@HTR2B
7.05e-34FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_69632efdc3b5b0652412ed2dcbf2bec4p17@PVT1
7.05e-34FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_69632efdc3b5b0652412ed2dcbf2bec4p@chr15:95869480..95869493, +
7.05e-34FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_69632efdc3b5b0652412ed2dcbf2bec4p@chr15:95869480..95869493, +
1.37e-31FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_e60478ffaae893c09b51cdd280e6f905p3@MOGAT1
1.37e-31FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_e60478ffaae893c09b51cdd280e6f905p3@MOGAT1
4.71e-31FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_910ffd3942c05bbd74f5f3554fdc9669p@chr5:134260455..134260471, -
4.71e-31FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_910ffd3942c05bbd74f5f3554fdc9669p3@AB464362
4.71e-31FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_910ffd3942c05bbd74f5f3554fdc9669p3@AB464362
4.71e-31FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_910ffd3942c05bbd74f5f3554fdc9669p@chr5:134260455..134260471, -
6.96e-30FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_aa90c102d841f57db9aa3404a89bae60p@chr16:65159902..65159909, -
6.96e-30FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_aa90c102d841f57db9aa3404a89bae60p@chr16:65159902..65159909, -
1.08e-29FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_32cbd7685f63ff6b90f31f99a41b7f27p@chr5:149537807..149537827, -
1.08e-29FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_32cbd7685f63ff6b90f31f99a41b7f27p@chr5:149537807..149537827, -
9.09e-27FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_cf161d4ac0a88395572323d321217211p6@ZIC4
9.09e-27FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_cf161d4ac0a88395572323d321217211p6@ZIC4
1.67e-26FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_230a99866e7ac7b76578c1399f067164p@chr2:238066183..238066194, -
1.67e-26FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_230a99866e7ac7b76578c1399f067164p@chr2:238066183..238066194, -
4.08e-26FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_4619b8003bc46f94330843c5f1ed240cp@chr5:40910094..40910097, +
4.08e-26FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_4619b8003bc46f94330843c5f1ed240cp@chr5:40910094..40910097, +
5.56e-26FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_b7e5462fb57fe742c506336778b8b353p@chr11:61634768..61634777, +
5.56e-26FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_b7e5462fb57fe742c506336778b8b353p@chr11:61634768..61634777, +
7.14e-26FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_21e0c5949f0dc9a76ea01328c8fd7fc8p2@ENST00000518934, p2@uc003xti.1
7.14e-26FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_21e0c5949f0dc9a76ea01328c8fd7fc8p2@ENST00000518934, p2@uc003xti.1
9.18e-26FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_d95e88278fe155f57e2a48f3a6d698afp@chr6:129504885..129504896, -
9.18e-26FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_d95e88278fe155f57e2a48f3a6d698afp@chr6:129504885..129504896, -
1.44e-25FFCP PHASE1:Hg19::chr12:279773..279812,+#_1bbb27f26d8d9990d5f51ce42170a4edp@chr12:279773..279812, +
1.44e-25FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_1bbb27f26d8d9990d5f51ce42170a4edp16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_1bbb27f26d8d9990d5f51ce42170a4edp16@ZIC1
1.44e-25FFCP PHASE2:Hg19::chr12:279773..279812,+#_1bbb27f26d8d9990d5f51ce42170a4edp@chr12:279773..279812, +
2.37e-25FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_94d12e7c1e39eee652839951c5dca6aap@chr3:147112699..147112713, -
2.37e-25FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_94d12e7c1e39eee652839951c5dca6aap@chr3:147112699..147112713, -
1.15e-24FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_5be985cdbd6f603caf4242d0ceae2c77p5@FOXD2
1.15e-24FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_5be985cdbd6f603caf4242d0ceae2c77p5@FOXD2
1.45e-24FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_9404f42acef47c4faabd189e9e10613bp@chr9:16138889..16138902, -
1.45e-24FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_9404f42acef47c4faabd189e9e10613bp@chr9:16138889..16138902, -
2.97e-24FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_3348c9fd81d9095ed4fd82a2b00d9006p6@MYO1B
2.97e-24FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_3348c9fd81d9095ed4fd82a2b00d9006p6@MYO1B
3.34e-24FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_fa1a37dfe2f182fc1e309f1d96146381p@chr3:147088197..147088208, -
3.34e-24FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_fa1a37dfe2f182fc1e309f1d96146381p@chr3:147088197..147088208, -
5.35e-24FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_6424b52905895e5cb2ac020fa395da17p@chr17:1013251..1013277, -
5.35e-24FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_6424b52905895e5cb2ac020fa395da17p@chr17:1013251..1013277, -
1.01e-23FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_3baa9efb6ebf8905c93d71f8909f6f85p@chr11:60640905..60640919, +
1.01e-23FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_3baa9efb6ebf8905c93d71f8909f6f85p@chr11:60640905..60640919, +
1.42e-23FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_38be61c37076d4d8da497f6cb1eda057p49@SEPT9
1.42e-23FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_38be61c37076d4d8da497f6cb1eda057p49@SEPT9
3.49e-23FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_0cab0dc15c65ca7f2e8a5f6846566e7dp30@ST5
3.49e-23FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_0cab0dc15c65ca7f2e8a5f6846566e7dp30@ST5
6.84e-23FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_5cbb36fec0a3103cf3ed5c9ea99046edp2@AB527577, p2@CU693346
6.84e-23FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_5cbb36fec0a3103cf3ed5c9ea99046edp2@AB527577, p2@CU693346
2.06e-22FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_db3f64a4d74c451cbaf430db438dc6efp6@CCDC86
2.06e-22FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_db3f64a4d74c451cbaf430db438dc6efp6@CCDC86

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005358&oldid=1836116"