CL:0000784: Difference between revisions
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|id=CL:0000784 | |id=CL:0000784 | ||
|name=plasmacytoid dendritic cell | |name=plasmacytoid dendritic cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection." [GOC:add, GOC:dsd, PMCID:PMC2118448, PMCID:PMC538703, PMID:15549123, PMID:17332250, PMID:17850486, PMID:20304825] | |def="A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection." [GOC:add, GOC:dsd, PMCID:PMC2118448, PMCID:PMC538703, PMID:15549123, PMID:17332250, PMID:17850486, PMID:20304825] | ||
|xref=BTO:0004625 | |xref=BTO:0004625 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 17:26, 26 June 2012
Name: | plasmacytoid dendritic cell | |
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Namespace: | cell;;efo | |
Definition: | "A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection." [GOC:add, GOC:dsd, PMCID:PMC2118448, PMCID:PMC538703, PMID:15549123, PMID:17332250, PMID:17850486, PMID:20304825] | |
Xrefs: |
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Synonyms: |
"DC2" EXACT [] "interferon-producing cell" EXACT [] "IPC" EXACT [] "lymphoid dendritic cell" EXACT [] "pDC" EXACT [] "plasmacytoid monocyte" EXACT [] "plasmacytoid T cell" EXACT [] "T-associated plasma cell" EXACT [] "type 2 DC" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000451(dendritic cell) |
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Children
derives from: | FF:0000045 (human plasmacytoid dendritic cell sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
- 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
- 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
Mouse (Mus musculus)
- 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
- 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
- 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000784 (plasmacytoid dendritic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data