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{{DOID
{{DOID
|id=DOID:3350
|alt_id=DOID:1630
|name=mesenchymal cell neoplasm
|namespace=disease_ontology
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic connective tissue that is capable of developing into connective tissue, such as bone, and cartilage, the lymphatic system, and the circulatory system." [url:http://en.wikipedia.org/wiki/Mesenchymal_cell, url:http://www.ncbi.nlm.nih.gov/books/NBK9549/]
|xref=NCI:C6587;;UMLS_CUI:C1332517;;UMLS_CUI:C1334699
|is_a=DOID:0050687
|synonym="benign miscellaneous mesenchymal tumor" EXACT [];;"mesenchymal tumor" EXACT [NCI2004_11_17:C7059]
|comment=
|comment=
|alt_id=DOID:1630
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic connective tissue that is capable of developing into connective tissue, such as bone, and cartilage, the lymphatic system, and the circulatory system." [url:http://en.wikipedia.org/wiki/Mesenchymal_cell, url:http://www.ncbi.nlm.nih.gov/books/NBK9549/]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3350
|is_a=DOID:0050687
|is_obsolete=
|located_in=
|located_in=
|name=mesenchymal cell neoplasm
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="benign miscellaneous mesenchymal tumor" EXACT [];;"mesenchymal tumor" EXACT [NCI2004_11_17:C7059]
|union_of=
|xref=NCI:C6587;;UMLS_CUI:C1332517;;UMLS_CUI:C1334699
}}
}}

Revision as of 10:34, 12 September 2014

Name:mesenchymal cell neoplasm
Namespace:disease_ontology
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic connective tissue that is capable of developing into connective tissue, such as bone, and cartilage, the lymphatic system, and the circulatory system." [url:http://en.wikipedia.org/wiki/Mesenchymal_cell, url:http://www.ncbi.nlm.nih.gov/books/NBK9549/]
Xrefs:
links:

NCI:C6587
UMLS_CUI:C1332517

UMLS_CUI:C1334699
Synonyms: "benign miscellaneous mesenchymal tumor" EXACT []
"mesenchymal tumor" EXACT [NCI2004_11_17:C7059]
Alt_id: DOID:1630

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050687(cell type cancer)



Children


is a:FF:10778-110G4 (hepatic mesenchymal tumor cell line:LI90),DOID:6193 (epithelioid sarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3350 (mesenchymal cell neoplasm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr3:40101288..40101291,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:40101288..40101291, -
1.55e-98FFCP PHASE2:Hg19::chr8:69961543..69961549,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr8:69961543..69961549, +
1.55e-98FFCP PHASE1:Hg19::chr8:69961543..69961549,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr8:69961543..69961549, +
1.55e-98FFCP PHASE1:Hg19::chr7:157478953..157478987,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr7:157478953..157478987, -
1.55e-98FFCP PHASE2:Hg19::chr3:36170472..36170478,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170472..36170478, -
1.55e-98FFCP PHASE1:Hg19::chr19:54598154..54598171,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr19:54598154..54598171, +
1.55e-98FFCP PHASE2:Hg19::chr9:26171424..26171462,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr9:26171424..26171462, -
1.55e-98FFCP PHASE1:Hg19::chr9:26171424..26171462,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr9:26171424..26171462, -
1.55e-98FFCP PHASE1:Hg19::chr3:36170751..36170761,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170751..36170761, -
1.55e-98FFCP PHASE2:Hg19::chr3:40101288..40101291,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:40101288..40101291, -
1.55e-98FFCP PHASE2:Hg19::chr7:157478953..157478987,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr7:157478953..157478987, -
1.55e-98FFCP PHASE2:Hg19::chr5:142023729..142023736,-#_df5ec08eec555e21ab61eb08c403e7a0p26@FGF1
1.55e-98FFCP PHASE2:Hg19::chr18:43282521..43282533,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr18:43282521..43282533, -
1.55e-98FFCP PHASE1:Hg19::chr5:142023729..142023736,-#_df5ec08eec555e21ab61eb08c403e7a0p26@FGF1
1.55e-98FFCP PHASE1:Hg19::chr18:43282521..43282533,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr18:43282521..43282533, -
1.55e-98FFCP PHASE2:Hg19::chr19:54598154..54598171,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr19:54598154..54598171, +
1.55e-98FFCP PHASE2:Hg19::chr3:36170751..36170761,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170751..36170761, -
1.55e-98FFCP PHASE1:Hg19::chr13:27202938..27202944,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr13:27202938..27202944, -
1.55e-98FFCP PHASE1:Hg19::chr3:36170775..36170785,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170775..36170785, -
1.55e-98FFCP PHASE2:Hg19::chr3:36170775..36170785,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170775..36170785, -
1.55e-98FFCP PHASE2:Hg19::chr13:27202938..27202944,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr13:27202938..27202944, -
1.55e-98FFCP PHASE1:Hg19::chr21:32526965..32526979,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr21:32526965..32526979, -
1.55e-98FFCP PHASE2:Hg19::chr21:32526965..32526979,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr21:32526965..32526979, -
1.55e-98FFCP PHASE2:Hg19::chr17:8774055..8774068,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr17:8774055..8774068, -
1.55e-98FFCP PHASE1:Hg19::chr17:8774055..8774068,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr17:8774055..8774068, -
1.55e-98FFCP PHASE2:Hg19::chr4:183750430..183750442,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr4:183750430..183750442, +
1.55e-98FFCP PHASE1:Hg19::chr4:183750430..183750442,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr4:183750430..183750442, +
1.55e-98FFCP PHASE2:Hg19::chr10:125605888..125605891,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr10:125605888..125605891, -
1.55e-98FFCP PHASE1:Hg19::chr1:240319887..240319892,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr1:240319887..240319892, +
1.55e-98FFCP PHASE1:Hg19::chr10:125605888..125605891,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr10:125605888..125605891, -
1.55e-98FFCP PHASE1:Hg19::chr19:54545670..54545677,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr19:54545670..54545677, -
1.55e-98FFCP PHASE2:Hg19::chr8:69961533..69961540,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr8:69961533..69961540, +
1.55e-98FFCP PHASE1:Hg19::chr8:69961533..69961540,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr8:69961533..69961540, +
1.55e-98FFCP PHASE2:Hg19::chr2:178887106..178887129,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr2:178887106..178887129, +
1.55e-98FFCP PHASE2:Hg19::chr1:240319887..240319892,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr1:240319887..240319892, +
1.55e-98FFCP PHASE1:Hg19::chr2:178887106..178887129,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr2:178887106..178887129, +
1.55e-98FFCP PHASE2:Hg19::chr4:183750467..183750481,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr4:183750467..183750481, +
1.55e-98FFCP PHASE1:Hg19::chr4:183750467..183750481,+#_df5ec08eec555e21ab61eb08c403e7a0p@chr4:183750467..183750481, +
1.55e-98FFCP PHASE1:Hg19::chr3:36170472..36170478,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr3:36170472..36170478, -
1.55e-98FFCP PHASE2:Hg19::chr6:142429681..142429688,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr6:142429681..142429688, -
1.55e-98FFCP PHASE2:Hg19::chr19:54545670..54545677,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr19:54545670..54545677, -
1.55e-98FFCP PHASE1:Hg19::chr6:142429681..142429688,-#_df5ec08eec555e21ab61eb08c403e7a0p@chr6:142429681..142429688, -
2.74e-50FFCP PHASE2:Hg19::chr8:100957024..100957046,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:100957024..100957046, +
2.74e-50FFCP PHASE1:Hg19::chr19:54545692..54545704,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545692..54545704, -
2.74e-50FFCP PHASE2:Hg19::chr1:240320047..240320058,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr1:240320047..240320058, +
2.74e-50FFCP PHASE2:Hg19::chr3:153575775..153575789,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr3:153575775..153575789, +
2.74e-50FFCP PHASE1:Hg19::chr1:233860255..233860261,+#_e5c70c09fee4e50b357ccf913ce63fafp2@BC032032
2.74e-50FFCP PHASE2:Hg19::chr19:54545692..54545704,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545692..54545704, -
2.74e-50FFCP PHASE1:Hg19::chr8:69961573..69961578,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:69961573..69961578, +
2.74e-50FFCP PHASE2:Hg19::chr8:69961573..69961578,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:69961573..69961578, +
2.74e-50FFCP PHASE1:Hg19::chr17:40477088..40477101,-#_e5c70c09fee4e50b357ccf913ce63fafp24@STAT3
2.74e-50FFCP PHASE2:Hg19::chr17:40477088..40477101,-#_e5c70c09fee4e50b357ccf913ce63fafp24@STAT3
2.74e-50FFCP PHASE1:Hg19::chr7:80929708..80929725,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr7:80929708..80929725, +
2.74e-50FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54600897..54600899, +
2.74e-50FFCP PHASE2:Hg19::chr1:233860255..233860261,+#_e5c70c09fee4e50b357ccf913ce63fafp2@BC032032
2.74e-50FFCP PHASE2:Hg19::chr18:56495029..56495073,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr18:56495029..56495073, +
2.74e-50FFCP PHASE1:Hg19::chr18:56495029..56495073,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr18:56495029..56495073, +
2.74e-50FFCP PHASE1:Hg19::chr19:54545780..54545792,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545780..54545792, -
2.74e-50FFCP PHASE2:Hg19::chr7:80929708..80929725,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr7:80929708..80929725, +
2.74e-50FFCP PHASE2:Hg19::chr8:41559667..41559679,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:41559667..41559679, -
2.74e-50FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54600897..54600899, +
2.74e-50FFCP PHASE1:Hg19::chr8:41559667..41559679,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:41559667..41559679, -
2.74e-50FFCP PHASE2:Hg19::chr2:172271476..172271479,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr2:172271476..172271479, +
2.74e-50FFCP PHASE1:Hg19::chr2:172271476..172271479,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr2:172271476..172271479, +
2.74e-50FFCP PHASE1:Hg19::chr19:54545613..54545621,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545613..54545621, -
2.74e-50FFCP PHASE2:Hg19::chr19:54545780..54545792,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545780..54545792, -
2.74e-50FFCP PHASE2:Hg19::chr19:54545613..54545621,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr19:54545613..54545621, -
2.74e-50FFCP PHASE1:Hg19::chr21:32529607..32529639,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr21:32529607..32529639, -
2.74e-50FFCP PHASE2:Hg19::chr2:173955327..173955334,+#_e5c70c09fee4e50b357ccf913ce63fafp26@ZAK
2.74e-50FFCP PHASE1:Hg19::chr2:173955327..173955334,+#_e5c70c09fee4e50b357ccf913ce63fafp26@ZAK
2.74e-50FFCP PHASE2:Hg19::chr21:32529607..32529639,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr21:32529607..32529639, -
2.74e-50FFCP PHASE2:Hg19::chr11:89114727..89114730,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr11:89114727..89114730, +
2.74e-50FFCP PHASE1:Hg19::chr11:89114727..89114730,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr11:89114727..89114730, +
2.74e-50FFCP PHASE1:Hg19::chr8:100957024..100957046,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr8:100957024..100957046, +
2.74e-50FFCP PHASE2:Hg19::chr17:8774126..8774143,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr17:8774126..8774143, -
2.74e-50FFCP PHASE1:Hg19::chr17:8774126..8774143,-#_e5c70c09fee4e50b357ccf913ce63fafp@chr17:8774126..8774143, -
2.74e-50FFCP PHASE1:Hg19::chr1:240320047..240320058,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr1:240320047..240320058, +
2.74e-50FFCP PHASE2:Hg19::chr11:106426627..106426632,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr11:106426627..106426632, +
2.74e-50FFCP PHASE1:Hg19::chr11:106426627..106426632,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr11:106426627..106426632, +
2.74e-50FFCP PHASE1:Hg19::chr3:153575775..153575789,+#_e5c70c09fee4e50b357ccf913ce63fafp@chr3:153575775..153575789, +
4.52e-50FFCP PHASE1:Hg19::chr13:38320384..38320418,-#_7e38c539c176e272e62a0acbaf07d01bp@chr13:38320384..38320418, -
4.52e-50FFCP PHASE2:Hg19::chr18:56494810..56494816,-#_7e38c539c176e272e62a0acbaf07d01bp@chr18:56494810..56494816, -
4.52e-50FFCP PHASE1:Hg19::chr18:56494810..56494816,-#_7e38c539c176e272e62a0acbaf07d01bp@chr18:56494810..56494816, -
4.52e-50FFCP PHASE2:Hg19::chr13:38320384..38320418,-#_7e38c539c176e272e62a0acbaf07d01bp@chr13:38320384..38320418, -
4.52e-50FFCP PHASE1:Hg19::chr6:2938437..2938442,-#_7e38c539c176e272e62a0acbaf07d01bp@chr6:2938437..2938442, -
4.52e-50FFCP PHASE2:Hg19::chr18:61501808..61501812,+#_7e38c539c176e272e62a0acbaf07d01bp@chr18:61501808..61501812, +
4.52e-50FFCP PHASE1:Hg19::chr18:61501808..61501812,+#_7e38c539c176e272e62a0acbaf07d01bp@chr18:61501808..61501812, +
4.52e-50FFCP PHASE2:Hg19::chrX:135342362..135342373,+#_7e38c539c176e272e62a0acbaf07d01bp@chrX:135342362..135342373, +
4.52e-50FFCP PHASE1:Hg19::chrX:135342362..135342373,+#_7e38c539c176e272e62a0acbaf07d01bp@chrX:135342362..135342373, +
4.52e-50FFCP PHASE2:Hg19::chr5:57104911..57104918,-#_7e38c539c176e272e62a0acbaf07d01bp@chr5:57104911..57104918, -
4.52e-50FFCP PHASE1:Hg19::chr5:57104911..57104918,-#_7e38c539c176e272e62a0acbaf07d01bp@chr5:57104911..57104918, -
4.52e-50FFCP PHASE2:Hg19::chr6:2938437..2938442,-#_7e38c539c176e272e62a0acbaf07d01bp@chr6:2938437..2938442, -
4.52e-50FFCP PHASE2:Hg19::chr19:38182936..38182940,-#_7e38c539c176e272e62a0acbaf07d01bp@chr19:38182936..38182940, -
4.52e-50FFCP PHASE1:Hg19::chr19:38182936..38182940,-#_7e38c539c176e272e62a0acbaf07d01bp@chr19:38182936..38182940, -
4.52e-50FFCP PHASE1:Hg19::chr13:38275506..38275512,-#_7e38c539c176e272e62a0acbaf07d01bp@chr13:38275506..38275512, -
4.52e-50FFCP PHASE1:Hg19::chr21:16426559..16426566,-#_7e38c539c176e272e62a0acbaf07d01bp@chr21:16426559..16426566, -
4.52e-50FFCP PHASE2:Hg19::chr21:16426559..16426566,-#_7e38c539c176e272e62a0acbaf07d01bp@chr21:16426559..16426566, -
4.52e-50FFCP PHASE2:Hg19::chr9:21549553..21549570,-#_7e38c539c176e272e62a0acbaf07d01bp@chr9:21549553..21549570, -
4.52e-50FFCP PHASE1:Hg19::chr9:21549553..21549570,-#_7e38c539c176e272e62a0acbaf07d01bp@chr9:21549553..21549570, -
4.52e-50FFCP PHASE2:Hg19::chr13:38275506..38275512,-#_7e38c539c176e272e62a0acbaf07d01bp@chr13:38275506..38275512, -

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