Personal tools

UBERON:0000058: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000058
|alt_id=
|name=duct
|namespace=
|def="A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
|xref=AAO:0011123;;FMA:30320;;galen:Duct;;ncithesaurus:Duct;;TAO:0005171;;XAO:0004000;;ZFA:0005171
|is_a=UBERON:0004111
|synonym="anatomical duct" EXACT [];;"exocrine duct" RELATED [];;"exocrine gland duct" RELATED []
|comment=TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways
|comment=TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000058
|is_a=UBERON:0000025
|is_obsolete=
|located_in=
|located_in=
|name=duct
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="anatomical duct" EXACT [];;"exocrine duct" RELATED [];;"exocrine gland duct" RELATED []
|union_of=
|xref=AAO:0011123;;FMA:30320;;galen:Duct;;ncithesaurus:Duct;;TAO:0005171;;XAO:0004000;;ZFA:0005171
}}
}}

Revision as of 10:50, 12 September 2014

Name:duct
Definition:"A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
Xrefs:
links:

AAO:0011123
FMA:30320
galen:Duct
ncithesaurus:Duct
TAO:0005171
XAO:0004000

ZFA:0005171
Synonyms: "anatomical duct" EXACT []
"exocrine duct" RELATED []
"exocrine gland duct" RELATED []
Comments:TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000025(tube)



Children

is a:UBERON:0002173 (alveolar duct),UBERON:0003928 (digestive system duct),UBERON:0005904 (duct of male reproductive system),UBERON:0006553 (renal duct),UBERON:0014716 (interlobular duct),FF:10489-107B3 (),FF:10515-107E2 ()
part of:CL:0000068 (duct epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000058 (duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.28e-50FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr14:63585020..63585025, -
5.28e-50FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr14:63585020..63585025, -
5.28e-50FFCP PHASE2:Mm9::chr5:145240607..145240622,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr5:145240607..145240622, -
5.28e-50FFCP PHASE1:Mm9::chr5:145240607..145240622,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr5:145240607..145240622, -
5.28e-50FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr14:63585048..63585062, -
5.28e-50FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8p@chr14:63585048..63585062, -
6.59e-38FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_f5c99666d3583946692206a046ceb4bbp4@Defb42
6.59e-38FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_f5c99666d3583946692206a046ceb4bbp4@Spink12
6.59e-38FFCP PHASE1:Mm9::chr6:30620232..30620242,+#_f5c99666d3583946692206a046ceb4bbp@chr6:30620232..30620242, +
6.59e-38FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_f5c99666d3583946692206a046ceb4bbp4@Spink12
6.59e-38FFCP PHASE2:Mm9::chr6:30620140..30620158,+#_f5c99666d3583946692206a046ceb4bbp@chr6:30620140..30620158, +
6.59e-38FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_f5c99666d3583946692206a046ceb4bbp@chr14:63585028..63585037, -
6.59e-38FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_f5c99666d3583946692206a046ceb4bbp@chr10:127470655..127470664, +
6.59e-38FFCP PHASE2:Mm9::chrX:154140764..154140773,+#_f5c99666d3583946692206a046ceb4bbp@chrX:154140764..154140773, +
6.59e-38FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_f5c99666d3583946692206a046ceb4bbp@chr14:63585028..63585037, -
6.59e-38FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_f5c99666d3583946692206a046ceb4bbp4@Defb42
6.59e-38FFCP PHASE1:Mm9::chr6:30620140..30620158,+#_f5c99666d3583946692206a046ceb4bbp@chr6:30620140..30620158, +
6.59e-38FFCP PHASE1:Mm9::chrX:154140764..154140773,+#_f5c99666d3583946692206a046ceb4bbp@chrX:154140764..154140773, +
6.59e-38FFCP PHASE2:Mm9::chr6:30620232..30620242,+#_f5c99666d3583946692206a046ceb4bbp@chr6:30620232..30620242, +
6.59e-38FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_f5c99666d3583946692206a046ceb4bbp@chr10:127470655..127470664, +
9.08e-34FFCP PHASE2:Hg19::chr17:46686583..46686590,-#_5b31fd97b3579057a9c8d5368c443c52p@chr17:46686583..46686590, -
9.08e-34FFCP PHASE1:Hg19::chr17:46686583..46686590,-#_5b31fd97b3579057a9c8d5368c443c52p@chr17:46686583..46686590, -
9.25e-34FFCP PHASE1:Mm9::chr2:9811213..9811223,-#_f28772590192ca5ecb06ddd535dcdc77p1@9230102O04Rik
9.25e-34FFCP PHASE2:Mm9::chr2:9811213..9811223,-#_f28772590192ca5ecb06ddd535dcdc77p1@9230102O04Rik
4.52e-32FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_bb9afff89598642e0be044d9f1eac2f9p@chrX:112044378..112044412, -
4.52e-32FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618495..125618517, +
4.52e-32FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_bb9afff89598642e0be044d9f1eac2f9p2@EDDM3A
4.52e-32FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125617607..125617617, +
4.52e-32FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_bb9afff89598642e0be044d9f1eac2f9p2@EDDM3A
4.52e-32FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_bb9afff89598642e0be044d9f1eac2f9p@chr3:140961228..140961237, +
4.52e-32FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:69951723..69951737, +
4.52e-32FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_bb9afff89598642e0be044d9f1eac2f9p2@PATE2
4.52e-32FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618661..125618677, +
4.52e-32FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125617636..125617646, +
4.52e-32FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_bb9afff89598642e0be044d9f1eac2f9p3@PATE2
4.52e-32FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_bb9afff89598642e0be044d9f1eac2f9p2@PATE1
4.52e-32FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_bb9afff89598642e0be044d9f1eac2f9p@chrX:112044378..112044412, -
4.52e-32FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:69950851..69950887, +
4.52e-32FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618739..125618756, -
4.52e-32FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_bb9afff89598642e0be044d9f1eac2f9p3@EDDM3A
4.52e-32FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:69950851..69950887, +
4.52e-32FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618495..125618517, +
4.52e-32FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_bb9afff89598642e0be044d9f1eac2f9p1@LCN9
4.52e-32FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_bb9afff89598642e0be044d9f1eac2f9p3@EDDM3A
4.52e-32FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125617607..125617617, +
4.52e-32FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_bb9afff89598642e0be044d9f1eac2f9p@chr3:140961228..140961237, +
4.52e-32FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_bb9afff89598642e0be044d9f1eac2f9p2@PATE2
4.52e-32FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618661..125618677, +
4.52e-32FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_bb9afff89598642e0be044d9f1eac2f9p1@LCN9
4.52e-32FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_bb9afff89598642e0be044d9f1eac2f9p@chr15:25165150..25165161, +
4.52e-32FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_bb9afff89598642e0be044d9f1eac2f9p@chr15:25165150..25165161, +
4.52e-32FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125617636..125617646, +
4.52e-32FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_bb9afff89598642e0be044d9f1eac2f9p@chr14:105935020..105935028, -
4.52e-32FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_bb9afff89598642e0be044d9f1eac2f9p@chr11:69951723..69951737, +
4.52e-32FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_bb9afff89598642e0be044d9f1eac2f9p@chr14:105935020..105935028, -
4.52e-32FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_bb9afff89598642e0be044d9f1eac2f9p3@PATE2
4.52e-32FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_bb9afff89598642e0be044d9f1eac2f9p2@PATE1
4.52e-32FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_bb9afff89598642e0be044d9f1eac2f9p@chr11:125618739..125618756, -
8.6e-32FFCP PHASE1:Mm9::chrX:156828404..156828426,+#_b095e5966b8ce23072f8e1d2475d5b1bp3@Gpr64
8.6e-32FFCP PHASE2:Mm9::chrX:156828404..156828426,+#_b095e5966b8ce23072f8e1d2475d5b1bp3@Gpr64
5.74e-29FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_ffa528b688cce2c48f8946992ee53a31p@chr2:152388713..152388729, +
5.74e-29FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_ffa528b688cce2c48f8946992ee53a31p@chr2:152388713..152388729, +
8.27e-29FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_19638a4c2fb752ba910b786007fab5a4p@chr11:76361451..76361499, +
8.27e-29FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_19638a4c2fb752ba910b786007fab5a4p2@D730048I06Rik, p2@Gm17727
8.27e-29FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_19638a4c2fb752ba910b786007fab5a4p2@D730048I06Rik, p2@Gm17727
8.27e-29FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_19638a4c2fb752ba910b786007fab5a4p4@Cyb561
8.27e-29FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_19638a4c2fb752ba910b786007fab5a4p@chr11:76361451..76361499, +
8.27e-29FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_19638a4c2fb752ba910b786007fab5a4p4@Cyb561
1.03e-28FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr14:63627556..63627564, -
1.03e-28FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr9:26732045..26732085, +
1.03e-28FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr9:26732045..26732085, +
1.03e-28FFCP PHASE1:Mm9::chr5:145240547..145240560,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr5:145240547..145240560, -
1.03e-28FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr9:26611246..26611253, -
1.03e-28FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_da7cccfd61b5668e92bd70b5f5d16bd8p2@Eddm3b
1.03e-28FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr9:26611246..26611253, -
1.03e-28FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_da7cccfd61b5668e92bd70b5f5d16bd8p2@Eddm3b
1.03e-28FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr14:63627556..63627564, -
1.03e-28FFCP PHASE2:Mm9::chr5:145240547..145240560,-#_da7cccfd61b5668e92bd70b5f5d16bd8p@chr5:145240547..145240560, -
1.28e-28FFCP PHASE1:Mm9::chr15:27418016..27418056,+#_4c50a4f9807601d9e96ae5eac100e264p@chr15:27418016..27418056, +
1.28e-28FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_4c50a4f9807601d9e96ae5eac100e264p@chr2:69981027..69981032, +
1.28e-28FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_4c50a4f9807601d9e96ae5eac100e264p@chr2:69981027..69981032, +
1.28e-28FFCP PHASE2:Mm9::chr15:27418016..27418056,+#_4c50a4f9807601d9e96ae5eac100e264p@chr15:27418016..27418056, +
1.58e-28FFCP PHASE2:Mm9::chr12:86818215..86818223,-#_22f9d17fe2fff49f06f4837517be5929p@chr12:86818215..86818223, -
1.58e-28FFCP PHASE1:Mm9::chr12:86818215..86818223,-#_22f9d17fe2fff49f06f4837517be5929p@chr12:86818215..86818223, -
2.49e-28FFCP PHASE2:Hg19::chr17:46679202..46679220,+#_ed26049e635601cbf671b4ea3b65ae99p2@ENST00000491264
2.49e-28FFCP PHASE1:Hg19::chr17:46679202..46679220,+#_ed26049e635601cbf671b4ea3b65ae99p2@ENST00000491264
8.13e-27FFCP PHASE2:Hg19::chr17:171147..171161,+#_d14d6ad61e256f24cc48a3919c127dbdp@chr17:171147..171161, +
8.13e-27FFCP PHASE1:Hg19::chr17:171147..171161,+#_d14d6ad61e256f24cc48a3919c127dbdp@chr17:171147..171161, +
7.57e-26FFCP PHASE1:Mm9::chr10:116399500..116399516,+#_b77a92ef88490d7e37654a5e57bc0927p@chr10:116399500..116399516, +
7.57e-26FFCP PHASE1:Mm9::chr9:35585507..35585517,-#_b77a92ef88490d7e37654a5e57bc0927p4@Gm17727
7.57e-26FFCP PHASE2:Mm9::chr10:85390145..85390153,+#_b77a92ef88490d7e37654a5e57bc0927p@chr10:85390145..85390153, +
7.57e-26FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_b77a92ef88490d7e37654a5e57bc0927p@chr6:86746562..86746579, -
7.57e-26FFCP PHASE2:Mm9::chr14:52542661..52542668,-#_b77a92ef88490d7e37654a5e57bc0927p3@Rnase13
7.57e-26FFCP PHASE1:Mm9::chr18:46301295..46301302,-#_b77a92ef88490d7e37654a5e57bc0927p@chr18:46301295..46301302, -
7.57e-26FFCP PHASE1:Mm9::chr15:75347689..75347703,+#_b77a92ef88490d7e37654a5e57bc0927p@chr15:75347689..75347703, +
7.57e-26FFCP PHASE1:Mm9::chr14:63630486..63630493,+#_b77a92ef88490d7e37654a5e57bc0927p5@Defb43
7.57e-26FFCP PHASE1:Mm9::chr12:104945515..104945524,-#_b77a92ef88490d7e37654a5e57bc0927p@chr12:104945515..104945524, -
7.57e-26FFCP PHASE1:Mm9::chr11:34107586..34107593,-#_b77a92ef88490d7e37654a5e57bc0927p@chr11:34107586..34107593, -
7.57e-26FFCP PHASE1:Mm9::chrX:75798097..75798101,-#_b77a92ef88490d7e37654a5e57bc0927p@chrX:75798097..75798101, -
7.57e-26FFCP PHASE1:Mm9::chr8:19141482..19141496,+#_b77a92ef88490d7e37654a5e57bc0927p@chr8:19141482..19141496, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000058&oldid=3273725"