UBERON:0004088: Difference between revisions
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|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001456 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:35, 27 June 2012
| Name: | ocular region | ||
|---|---|---|---|
| Definition: | "." [HP:0000284] | ||
| Xrefs: |
| ||
| Synonyms: |
"content of orbital part of eye" EXACT [FMA:260119] "eye region" EXACT [OBOL:automatic] | ||
| Comments: | TODO: consider the following: eyeball (eye proper) part_of eye (= eyeball+eyelid etc) part_of ocular region (= eye + eyebrow); note the FMA class is more narrow though, and is more like eye + muscles + vasculature // in HP covers eyelid, eyebrow |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|---|
| part_of: | UBERON:0001456(face) |
Children
| part of: | UBERON:0000019 (camera-type eye) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
- 10299-104H2 (eye - muscle medial, donor2)
... further results Mouse (Mus musculus)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
- 10299-104H2 (eye - muscle medial, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004088 (ocular region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_bf123f4ba155748dead7c4110fcc1c2b | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_bf123f4ba155748dead7c4110fcc1c2b | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_bf123f4ba155748dead7c4110fcc1c2b | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_bf123f4ba155748dead7c4110fcc1c2b | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_bf123f4ba155748dead7c4110fcc1c2b | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_bf123f4ba155748dead7c4110fcc1c2b | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_bf123f4ba155748dead7c4110fcc1c2b | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_bf123f4ba155748dead7c4110fcc1c2b | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_bf123f4ba155748dead7c4110fcc1c2b | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_bf123f4ba155748dead7c4110fcc1c2b | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_bf123f4ba155748dead7c4110fcc1c2b | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_bf123f4ba155748dead7c4110fcc1c2b | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_bf123f4ba155748dead7c4110fcc1c2b | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_bf123f4ba155748dead7c4110fcc1c2b | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_bf123f4ba155748dead7c4110fcc1c2b | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_bf123f4ba155748dead7c4110fcc1c2b | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_bf123f4ba155748dead7c4110fcc1c2b | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_bf123f4ba155748dead7c4110fcc1c2b | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_bf123f4ba155748dead7c4110fcc1c2b | p4@Dct |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_bf123f4ba155748dead7c4110fcc1c2b | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_bf123f4ba155748dead7c4110fcc1c2b | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_bf123f4ba155748dead7c4110fcc1c2b | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_bf123f4ba155748dead7c4110fcc1c2b | p@chr3:129525389..129525400, - |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_cc2d23cc6ec70e36de9c4cda376cb444 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_cc2d23cc6ec70e36de9c4cda376cb444 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_cc2d23cc6ec70e36de9c4cda376cb444 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_cc2d23cc6ec70e36de9c4cda376cb444 | p@chr7:64675015..64675028, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_c68ee37678299e02158da29a46af1c7e | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_c68ee37678299e02158da29a46af1c7e | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_c68ee37678299e02158da29a46af1c7e | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_c68ee37678299e02158da29a46af1c7e | p6@Pax6 |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_8bc55d144a787becd1021cfc52510be4 | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_8bc55d144a787becd1021cfc52510be4 | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@Opn4 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr1:65147224..65147236, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690636..112690656,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p2@Cryga |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:113506006..113506025, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@Gm4792 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112690744..112690755, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p2@Hsd17b12 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112690744..112690755, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112675556..112675574, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr1:65147224..65147236, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr1:65146997..65147021, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr17:31818629..31818644, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:113506006..113506025, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p2@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr1:65146997..65147021, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p2@Cryga |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr17:31818215..31818239, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p11@Rnf123 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_7b1a7e9fdf58d31a702781dbb16e7cda | p@chr5:113506190..113506202, - |
