CL:0000187: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [MESH:A.11.620] | ||
|derives_from= | |derives_from= | ||
|develops_from=CL:0000056 | |develops_from=CL:0000056 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000187 | |||
|is_a=CL:0000183 ;;CL:0000393 ;;CL:0000548 ;;CL:0002371 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=muscle cell | |||
|namespace=cell;;efo | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
| | |subset= | ||
| | |synonym="myocyte" EXACT [] | ||
|union_of= | |||
|xref=BTO:0000888;;BTO:0000902;;FBbt:00005074;;FMA:67328;;WBbt:0003675 | |||
}} | }} | ||
Revision as of 10:15, 12 September 2014
| Name: | muscle cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [MESH:A.11.620] | ||
| Xrefs: |
| ||
| Synonyms: | "myocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000183(contractile cell),CL:0000393(electrically responsive cell),CL:0000548(animal cell),CL:0002371(somatic cell) |
|---|---|
| develops_from: | CL:0000056(myoblast) |
Children
| is a: | CL:0000737 (striated muscle cell),CL:0008000 (non-striated muscle cell),CL:0008007 (visceral muscle cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11281-116I3 (Skeletal Muscle Cells, donor1)
- 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11281-116I3 (Skeletal Muscle Cells, donor1)
- 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000187 (muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.36e-86 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_83a5e95decc61c805c03380695bb568e | p@chrX:160838683..160838694, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_83a5e95decc61c805c03380695bb568e | p@chrX:160838683..160838694, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_90b795cb703f6c6fcc8f59dc0117fc66 | p@chr12:105433069..105433075, - |
| 1.01e-74 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_90b795cb703f6c6fcc8f59dc0117fc66 | p@chr12:105433069..105433075, - |
| 1.01e-74 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_90b795cb703f6c6fcc8f59dc0117fc66 | p@chrX:65748600..65748616, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_90b795cb703f6c6fcc8f59dc0117fc66 | p@chrX:65748600..65748616, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_ec249e48484b37efa95e12f2ebe8788d | p@chrX:160838787..160838800, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_ec249e48484b37efa95e12f2ebe8788d | p@chrX:160838787..160838800, + |
| 1.74e-65 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_39c172337a36663e5da8587a0d9630de | p@chr11:81849982..81850000, + |
| 1.74e-65 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_39c172337a36663e5da8587a0d9630de | p@chr11:81849982..81850000, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_df258ecbeb0b6d70250c2a0566d82376 | p@chr17:14813242..14813246, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_df258ecbeb0b6d70250c2a0566d82376 | p@chr17:14813242..14813246, - |
| 1.36e-58 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_5210f5fba6e5b14f395b029d95eff8f2 | p4@Gpr39 |
| 1.36e-58 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_5210f5fba6e5b14f395b029d95eff8f2 | p4@Gpr39 |
| 3.91e-58 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_6d6a98224f16607ee122cc316196f169 | p@chrX:160840025..160840037, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_6d6a98224f16607ee122cc316196f169 | p@chrX:160840048..160840057, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_6d6a98224f16607ee122cc316196f169 | p@chrX:160823859..160823870, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_6d6a98224f16607ee122cc316196f169 | p@chrX:160840025..160840037, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_6d6a98224f16607ee122cc316196f169 | p@chrX:160823859..160823870, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_6d6a98224f16607ee122cc316196f169 | p@chrX:160840048..160840057, + |
| 1.01e-53 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_1f9aab8f95eb706e401620edf1f12502 | p@chr6:53359400..53359406, + |
| 1.01e-53 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_1f9aab8f95eb706e401620edf1f12502 | p@chr6:53359400..53359406, + |
| 1.02e-52 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_18fab6835940d8bf495dd9f25e0af462 | p11@Fam198b |
| 1.02e-52 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_18fab6835940d8bf495dd9f25e0af462 | p11@Fam198b |
| 1.99e-52 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_a689b6bc385af77f58437515bafea4c8 | p@chr1:127574253..127574264, + |
| 1.99e-52 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_a689b6bc385af77f58437515bafea4c8 | p@chr1:127574253..127574264, + |
| 3.23e-52 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_f16a09a9f971d07733e4d5c5ef4361ad | p7@Gpr39 |
| 3.23e-52 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_f16a09a9f971d07733e4d5c5ef4361ad | p7@Gpr39 |
| 4.11e-52 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_25576bb5cd22df5ad8437b62a70c85b8 | p11@Gpr39 |
| 4.11e-52 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_25576bb5cd22df5ad8437b62a70c85b8 | p11@Gpr39 |
| 5.23e-52 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_52ae19b7a21bd6c1ed2013aa14ce4d20 | p@chrX:160839768..160839780, + |
| 5.23e-52 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_52ae19b7a21bd6c1ed2013aa14ce4d20 | p@chrX:160839768..160839780, + |
| 1.37e-51 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_c20e68ce331db696847eb4694f771559 | p8@Gpr39 |
| 1.37e-51 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_c20e68ce331db696847eb4694f771559 | p8@Gpr39 |
| 3.73e-48 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_811e0af2d9bb4887af13bbb71dbf375f | p@chr7:96658543..96658553, - |
| 3.73e-48 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_811e0af2d9bb4887af13bbb71dbf375f | p@chr7:96658543..96658553, - |
| 6.34e-47 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_3a1c6b4d35fb2bb6390bd29372ce2148 | p2@Il6 |
| 6.34e-47 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_3a1c6b4d35fb2bb6390bd29372ce2148 | p@chr7:91081998..91082010, - |
| 6.34e-47 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_3a1c6b4d35fb2bb6390bd29372ce2148 | p2@Il6 |
| 6.34e-47 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_3a1c6b4d35fb2bb6390bd29372ce2148 | p@chr7:91081998..91082010, - |
| 7.16e-47 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_fc5c7c095d3b71d2e6c183dabdb20f98 | p@chr18:52678391..52678395, - |
| 7.16e-47 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_fc5c7c095d3b71d2e6c183dabdb20f98 | p@chr18:52678391..52678395, - |
| 8.31e-47 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_2c3c42e4c9976f1f5e59aca39707f6a9 | p@chr10:67598037..67598049, - |
| 8.31e-47 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_2c3c42e4c9976f1f5e59aca39707f6a9 | p@chr10:67598037..67598049, - |
| 1.86e-46 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_278d5001f7f45fbf4a212751cc7f197f | p@chr2:65009852..65009866, - |
| 1.86e-46 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_278d5001f7f45fbf4a212751cc7f197f | p@chr2:65009852..65009866, - |
| 5.11e-46 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_fe96ecd755916adb13d45074f84116b0 | p@chr6:91222095..91222107, + |
| 5.11e-46 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_fe96ecd755916adb13d45074f84116b0 | p@chr6:91222095..91222107, + |
| 7.81e-46 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_dce3d80a159de72795b6eeeea721ba03 | p9@Kctd10 |
| 7.81e-46 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_dce3d80a159de72795b6eeeea721ba03 | p9@Kctd10 |
| 9.65e-46 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_a2d5dc8d83221e411c9387bfea5b1dac | p6@Gpr39 |
| 9.65e-46 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_a2d5dc8d83221e411c9387bfea5b1dac | p6@Gpr39 |
| 1.69e-44 | FFCP PHASE1:Mm9::chrX:70740923..70740934,+#_0aadfb7c24b4261e9804978c80ff5532 | p@chrX:70740923..70740934, + |
| 1.69e-44 | FFCP PHASE2:Mm9::chrX:70740923..70740934,+#_0aadfb7c24b4261e9804978c80ff5532 | p@chrX:70740923..70740934, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_d151cfca24618c5c621dc0f1b014678b | p@chr17:14802633..14802637, - |
| 5.38e-44 | FFCP PHASE2:Mm9::chrX:160839338..160839364,+#_d151cfca24618c5c621dc0f1b014678b | p@chrX:160839338..160839364, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_d151cfca24618c5c621dc0f1b014678b | p3@E030003E18Rik |
| 5.38e-44 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_d151cfca24618c5c621dc0f1b014678b | p@chr17:14827154..14827169, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chrX:160829660..160829667,+#_d151cfca24618c5c621dc0f1b014678b | p14@Figf |
| 5.38e-44 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_d151cfca24618c5c621dc0f1b014678b | p5@Adamts2 |
| 5.38e-44 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_d151cfca24618c5c621dc0f1b014678b | p@chr17:14802633..14802637, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_d151cfca24618c5c621dc0f1b014678b | p@chr7:106471695..106471701, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_d151cfca24618c5c621dc0f1b014678b | p@chrX:160839744..160839754, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_d151cfca24618c5c621dc0f1b014678b | p@chr2:178190171..178190178, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_d151cfca24618c5c621dc0f1b014678b | p@chr9:102766842..102766853, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chrX:160829660..160829667,+#_d151cfca24618c5c621dc0f1b014678b | p14@Figf |
| 5.38e-44 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_d151cfca24618c5c621dc0f1b014678b | p@chr17:87574327..87574332, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr16:85900926..85900936,-#_d151cfca24618c5c621dc0f1b014678b | p9@Adamts5 |
| 5.38e-44 | FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_d151cfca24618c5c621dc0f1b014678b | p3@E030003E18Rik |
| 5.38e-44 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_d151cfca24618c5c621dc0f1b014678b | p@chr2:112043522..112043530, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_d151cfca24618c5c621dc0f1b014678b | p@chr2:178190171..178190178, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_d151cfca24618c5c621dc0f1b014678b | p@chr2:112043522..112043530, - |
| 5.38e-44 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_d151cfca24618c5c621dc0f1b014678b | p@chrX:160839744..160839754, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_d151cfca24618c5c621dc0f1b014678b | p@chr7:106471695..106471701, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_d151cfca24618c5c621dc0f1b014678b | p@chr8:69228447..69228492, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_d151cfca24618c5c621dc0f1b014678b | p5@Adamts2 |
| 5.38e-44 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_d151cfca24618c5c621dc0f1b014678b | p@chr8:69228447..69228492, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chrX:160839338..160839364,+#_d151cfca24618c5c621dc0f1b014678b | p@chrX:160839338..160839364, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_d151cfca24618c5c621dc0f1b014678b | p@chr9:56096674..56096680, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_d151cfca24618c5c621dc0f1b014678b | p@chr9:102766842..102766853, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_d151cfca24618c5c621dc0f1b014678b | p@chr17:14827154..14827169, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_d151cfca24618c5c621dc0f1b014678b | p@chr17:87574327..87574332, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_d151cfca24618c5c621dc0f1b014678b | p@chr9:56096674..56096680, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr16:85900926..85900936,-#_d151cfca24618c5c621dc0f1b014678b | p9@Adamts5 |
| 2.46e-41 | FFCP PHASE1:Mm9::chrX:160832435..160832462,+#_e57cf35679c44f012a26fc36a302b000 | p@chrX:160832435..160832462, + |
| 2.46e-41 | FFCP PHASE2:Mm9::chrX:160832435..160832462,+#_e57cf35679c44f012a26fc36a302b000 | p@chrX:160832435..160832462, + |
| 2.46e-41 | FFCP PHASE1:Mm9::chrX:160839194..160839217,+#_e57cf35679c44f012a26fc36a302b000 | p@chrX:160839194..160839217, + |
| 2.46e-41 | FFCP PHASE2:Mm9::chrX:160839194..160839217,+#_e57cf35679c44f012a26fc36a302b000 | p@chrX:160839194..160839217, + |
| 4.98e-41 | FFCP PHASE2:Mm9::chr6:91220024..91220048,+#_285cb7d341dc50ff532008d4c54eeba0 | p@chr6:91220024..91220048, + |
| 4.98e-41 | FFCP PHASE1:Mm9::chr6:91220024..91220048,+#_285cb7d341dc50ff532008d4c54eeba0 | p@chr6:91220024..91220048, + |
| 3.83e-40 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_81c2b162da8f6ae24c8e3d195911b574 | p@chr11:102661517..102661541, - |
| 3.83e-40 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_81c2b162da8f6ae24c8e3d195911b574 | p@chr11:102661517..102661541, - |
| 3.93e-40 | FFCP PHASE1:Mm9::chr9:102622418..102622429,+#_8160be59a92282c8b2e519643a4a8fab | p10@Amotl2 |
| 3.93e-40 | FFCP PHASE2:Mm9::chr9:102622418..102622429,+#_8160be59a92282c8b2e519643a4a8fab | p10@Amotl2 |
| 1.32e-39 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_7055457142fa151e33dc4f737bcd6732 | p@chr4:74703497..74703511, + |
| 1.32e-39 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_7055457142fa151e33dc4f737bcd6732 | p@chr4:74703497..74703511, + |
| 1.92e-39 | FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_fb276df6069a1fac89ca5f820bbe7967 | p10@Gpr39 |
| 1.92e-39 | FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_fb276df6069a1fac89ca5f820bbe7967 | p10@Gpr39 |
| 3.01e-39 | FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_1bd5921448494fadcc4143593d3454b4 | p@chrX:160839663..160839673, + |
| 3.01e-39 | FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_1bd5921448494fadcc4143593d3454b4 | p@chrX:160839663..160839673, + |
