UBERON:0003060: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:XAO_0000063-ZFA_0000150 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duct] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0003064;;UBERON:0005721 | |develops_from=UBERON:0003064;;UBERON:0005721 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003060 | |||
|is_a=UBERON:0009201 ;;UBERON:0012275 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=pronephric duct | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0002120 | |part_of=UBERON:0002120 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the anal region where it empties separately from, and just posterior to the anus. Kimmel et al, 1995.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the anal region where it empties separately from, and just posterior to the anus. Kimmel et al, 1995.[TAO]" xsd:string | ||
| | |subset=uberon_slim | ||
| | |synonym="archinephric duct" RELATED [VHOG:0000082];;"ductus pronephricus" RELATED LATIN [Wikipedia:Pronephric_duct] | ||
|union_of= | |||
|xref=AAO:0011088;;ncithesaurus:Pronephric_Duct;;SCTID:361406002;;TAO:0000150;;VHOG:0000082;;XAO:0000063;;ZFA:0000150 | |||
}} | }} | ||
Revision as of 11:20, 12 September 2014
| Name: | pronephric duct | ||
|---|---|---|---|
| Definition: | "In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duct] | ||
| Xrefs: |
| ||
| Synonyms: |
"archinephric duct" RELATED [VHOG:0000082] "ductus pronephricus" RELATED LATIN [Wikipedia:Pronephric_duct] | ||
| Alt_id: | UBERON:XAO_0000063-ZFA_0000150 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009201(nephric duct),UBERON:0012275(meso-epithelium) |
|---|---|
| develops_from: | UBERON:0003064(intermediate mesoderm),UBERON:0005721(pronephric mesoderm) |
| part_of: | UBERON:0002120(pronephros) |
Children
| develops from: | UBERON:0003074 (mesonephric duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003060 (pronephric duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_17f9453cc1074c62296fe60e07a39be4 | p4@Spink12 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_17f9453cc1074c62296fe60e07a39be4 | p4@Spink12 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:126591032..126591039,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr8:126591032..126591039, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:167688595..167688624,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr2:167688595..167688624, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:148625223..148625234,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr2:148625223..148625234, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr19:17591760..17591765,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr19:17591760..17591765, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:52542831..52542836,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p4@Rnase13 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr13:21379306..21379315,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr13:21379306..21379315, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:90155923..90155932,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr1:90155923..90155932, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr7:151928014..151928021,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr7:151928014..151928021, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr6:49817766..49817772,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr6:49817766..49817772, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:25706249..25706254,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr8:25706249..25706254, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr13:21379098..21379104,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr13:21379098..21379104, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr16:25752228..25752237, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:116901496..116901514,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p1@ENSMUST00000150628, p1@ENSMUST00000152401, p1@uc007mmw.1 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:100350777..100350782,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr9:100350777..100350782, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:87936238..87936249,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr1:87936238..87936249, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:75866210..75866235,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr2:75866210..75866235, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr13:21385729..21385768,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr13:21385729..21385768, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr15:54678902..54678911,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr15:54678902..54678911, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:59845376..59845393,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr11:59845376..59845393, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr5:31379437..31379448,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr5:31379437..31379448, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:70761931..70761971,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr9:70761931..70761971, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:26599476..26599505,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p3@Glb1l2 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr18:44261480..44261486,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr18:44261480..44261486, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr18:74784728..74784738,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr18:74784728..74784738, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:51680551..51680555,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr14:51680551..51680555, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr13:21379118..21379120,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr13:21379118..21379120, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:19141471..19141518,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr8:19141471..19141518, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr5:110773718..110773729,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr5:110773718..110773729, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr11:116901496..116901514,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p1@ENSMUST00000150628, p1@ENSMUST00000152401, p1@uc007mmw.1 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr12:16664775..16664784,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr12:16664775..16664784, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:35252614..35252635,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p3@Ly6g5b |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:101959282..101959299,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr11:101959282..101959299, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr6:18338054..18338077,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr6:18338054..18338077, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr5:100634942..100634968,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr5:100634942..100634968, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr5:112721323..112721328,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr5:112721323..112721328, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:90155722..90155743,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr1:90155722..90155743, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr16:22547027..22547063,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr16:22547027..22547063, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:152302813..152302821,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p3@Defb20 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr6:83487114..83487124,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr6:83487114..83487124, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr4:134893699..134893708,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr4:134893699..134893708, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:103837894..103837900,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr14:103837894..103837900, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr12:16664708..16664723,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr12:16664708..16664723, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:50280181..50280192,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chrX:50280181..50280192, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:12571679..12571688,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chrX:12571679..12571688, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr5:31379972..31379981,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr5:31379972..31379981, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr15:75304900..75304907,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr15:75304900..75304907, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr9:26785438..26785446,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p3@Acad8 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr18:62816857..62816866,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p7@Spink10 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:164464249..164464258,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr2:164464249..164464258, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:158083961..158083968,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p4@Bpi |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:25677632..25677636,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr2:25677632..25677636, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:69116075..69116107,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr14:69116075..69116107, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:130496166..130496188,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chrX:130496166..130496188, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:75798097..75798101,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chrX:75798097..75798101, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:26731771..26731780,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr9:26731771..26731780, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:22061771..22061777,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p3@Gm6040, p3@LOC100503992 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr3:107731917..107731926,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr3:107731917..107731926, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr5:110773718..110773729,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr5:110773718..110773729, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:158083961..158083968,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p4@Bpi |
| 3.28e-58 | FFCP PHASE2:Mm9::chr3:103650817..103650825,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr3:103650817..103650825, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr11:101958844..101958851,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr11:101958844..101958851, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:87936238..87936249,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr1:87936238..87936249, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:155738967..155738974,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr1:155738967..155738974, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr7:65995799..65995810,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr7:65995799..65995810, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:85390145..85390153,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr10:85390145..85390153, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr5:31379377..31379384,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr5:31379377..31379384, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:164479340..164479350,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr2:164479340..164479350, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr13:21379430..21379437,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr13:21379430..21379437, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr7:151927980..151927988,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr7:151927980..151927988, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:53937918..53937922,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p7@P4ha2 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr12:103896072..103896081,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr12:103896072..103896081, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:51627586..51627595,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p4@Rnase10 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:52542831..52542836,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p4@Rnase13 |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:75798132..75798152,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chrX:75798132..75798152, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:156829476..156829504,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chrX:156829476..156829504, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr18:62775330..62775347,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr18:62775330..62775347, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr15:75304916..75304925,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr15:75304916..75304925, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:19141482..19141496,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr8:19141482..19141496, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:152388977..152388983,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr2:152388977..152388983, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:91753336..91753348,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr10:91753336..91753348, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:90368977..90368987,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr1:90368977..90368987, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:25678985..25679033,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr2:25678985..25679033, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr13:24270118..24270122,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr13:24270118..24270122, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:35651807..35651818,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p3@9230110F15Rik |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:164439019..164439029,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p1@Wfdc6b |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:69116075..69116107,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr14:69116075..69116107, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:17224952..17224968,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr11:17224952..17224968, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:113585667..113585673,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr8:113585667..113585673, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr9:26719400..26719404,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr9:26719400..26719404, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:130496166..130496188,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chrX:130496166..130496188, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr15:54678915..54678922,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr15:54678915..54678922, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:63611214..63611229,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr14:63611214..63611229, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr5:31379845..31379855,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr5:31379845..31379855, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:26611214..26611227,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr9:26611214..26611227, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr11:17224952..17224968,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr11:17224952..17224968, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:192816674..192816714,+#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr1:192816674..192816714, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr4:137325863..137325870,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p15@Alpl |
| 3.28e-58 | FFCP PHASE1:Mm9::chr13:21383212..21383225,-#_5ae5a5df85554ce46d6e6a24a59f6d3e | p@chr13:21383212..21383225, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the anal region where it empties separately from, and just posterior to the anus. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
