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MacroAPE 1083:Motif GNCATG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;8272;0!02;2068;2068;2068;2068!03;0;8272;0;0!04;8272;0;0;0!05;0;0;0;8272!06;0;0;8272;0 |macroape_1083_sample_pvalues=11376-118A8;0.0124...")
 
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1;0.840568!12180-129A2;0.0962809!12181-129A3;0.199521!12176-128I7;0.214908!12177-128I8;0.142452!12182-129A4;0.210168!12183-129A5;0.116464!12184-129A6;0.0648703!10809-111A8;0.367198!10597-108E3;0.000903715!10717-109I6;0.699534!10455-106G5;0.0554802!10534-107G3;0.127492!10429-106D6;0.368461!10464-106H5;0.675161!10827-111C8;0.344011!10789-110H6;0.000551936!10828-111C9;0.00193255!10788-110H5;0.139821!10792-110H9;0.066419!10765-110E9;0.00983548!10829-111D1;0.00894301!10830-111D2;0.00604577!10831-111D3;0.264081!10832-111D4;0.0593988!10833-111D5;0.0697091!10764-110E8;0.0154695!10770-110F5;0.141023!10399-106A3;0.0194111!10400-106A4;0.0528489!10405-106A9;0.0599873!10834-111D6;0.0803578!10835-111D7;0.0107033!10836-111D8;0.293136!10837-111D9;0.272892!10699-109G6;0.122629!10802-111A1;0.166309!10796-110I4;0.167967!10010-101C1;0.0195478!10810-111A9;0.429671!10421-106C7;0.341659!10708-109H6;0.993054!12235-129G3;0.150651!12236-129G4;0.407611!12237-129G5;0.818797!10167-103B5;0.237204!10151-102I7;0.0860143!10428-106D5;0.0817884!10795-110I3;0.0036808!10805-111A4;0.0195412!10052-101G7;0.824452!10189-103D9;0.224167!10589-108D4;0.239999!10425-106D2;0.0402765!10427-106D4;0.444633!10702-109G9;0.975473!10432-106D9;0.143154!10496-107C1;0.214333!10718-109I7;0.579424!10011-101C2;0.0115708!10053-101G8;0.0755672!10686-109F2;0.767243!10084-102B3;0.175285!10012-101C3;0.340985!10085-102B4;0.138568!10482-107A5;0.172805!10419-106C5;0.312398!10080-102A8;0.772078!10760-110E4;0.588191!10709-109H7;0.00113915!10710-109H8;0.00319388!10703-109H1;0.00447847!10719-109I8;0.452651!10642-109A3;0.331832!10177-103C6;0.389841!10164-103B2;0.050946!10173-103C2;0.0858639!10166-103B4;0.026371!10083-102B2;0.0265683!10188-103D8;0.214066!10552-107I3;0.135428!10553-107I4;0.160716!10013-101C4;0.504221!10536-107G5;0.152344!10618-108G6;0.777024!10423-106C9;0.569313!10785-110H2;0.742498!12238-129G6;0.377963!12239-129G7;0.145175!12240-129G8;0.524692!10416-106C2;0.00546469!10801-110I9;0.00345805!10766-110F1;0.00367167!10824-111C5;0.00297856!10825-111C6;0.472615!10826-111C7;0.498883!10454-106G4;0.50912!10409-106B4;0.15192!10638-108I8;0.345643!10636-108I6;0.175858!10513-107D9;0.409454!10420-106C6;0.00532078!10082-102B1;0.788557!10014-101C5;0.515886!10070-101I7;0.52361!10452-106G2;0.242158!10453-106G3;0.301502!10449-106F8;0.972906!10042-101F6;0.880766!10069-101I6;0.245503!10193-103E4;0.775641!10631-108I1;0.197204!10438-106E6;0.0761335!10488-107B2;0.0808907!10196-103E7;0.0488801!10071-101I8;0.174092!10071-101I8;0.462075!10041-101F5;0.0423219!10451-106G1;0.110462!10450-106F9;0.498151!10604-108F1;0.0961043!10605-108F2;0.737367!10606-108F3;0.620844!10603-108E9;0.97587!10497-107C2;0.677554!10448-106F7;0.425264!10643-109A4;0.713985!10426-106D3;0.0734384!10431-106D8;0.199163!10197-103E8;0.161135!10443-106F2;0.811885!10815-111B5;0.745995!10816-111B6;0.0107522!10817-111B7;0.0413571!10015-101C6;0.0058937!10410-106B5;0.69978!10054-101G9;0.836692!10758-110E2;0.229968!10711-109H9;0.143437!10040-101F4;0.23949!10470-106I2;0.112322!10415-106C1;0.154836!10198-103E9;0.565274!10614-108G2;0.721643!10612-108F9;0.00448042!10549-107H9;0.0731877!10615-108G3;0.399381!10487-107B1;0.55904!10433-106E1;0.770971!10688-109F4;0.582446!10444-106F3;0.0562802!10444-106F3;0.727606!10485-107A8;0.940663!10413-106B8;0.910761!10175-103C4;0.503813!10161-103A8;0.100134!12131-128D7;0.0621337!10624-108H3;0.801433!10712-109I1;0.529055!10205-103F7;0.663573!10206-103F8;0.103119!10207-103F9;0.299065!10050-101G5;0.000152038!10051-101G6;0.452269!10016-101C7;0.664235!10046-101G1;0.760428!10778-110G4;0.128586!10633-108I3;0.0118343!10818-111B8;0.873702!10819-111B9;0.0260969!10820-111C1;0.0238983!10484-107A7;0.0461885!10808-111A7;0.251318!10169-103B7;0.00894403!10153-102I9;0.0724876!13425-144D5;0.0817217!13433-144E4;0.125455!13437-144E8;0.166842!11904-125F5;0.226692!11905-125F6;0.122034!10039-101F3;0.384151!10791-110H8;0.136035!10017-101C8;3.88953e-05!10045-101F9;0.483942!10509-107D5;0.476108!10839-111E2;0.497191!10692-109F8;0.00879815!10079-102A7;0.845927!10078-102A6;0.773978!10721-110A1;0.765185!10569-108B2;0.0430309!10570-108B3;0.13472!10571-108B4;0.182484!10647-109A8;0.469454!10752-110D5;0.876503!10782-110G8;0.315898!10726-110A6;0.423375!10018-101C9;0.0552037!10086-102B5;0.00395!10182-103D2;0.000636256!10165-103B3;0.0793026!10499-107C4;0.0905646!10408-106B3;0.344731!10019-101D1;0.140201!10068-101I5;0.232259!10075-102A3;0.00634968!10077-102A5;0.755699!10727-110A7;0.969796!10775-110G1;0.130158!10412-106B7;0.174138!12231-129F8;0.881033!12232-129F9;0.7012!12233-129G1;0.912092!12234-129G2;0.916093!10414-106B9;0.783841!10170-103B8;0.490558!10183-103D3;0.083872!10150-102I6;0.0803585!10174-103C3;0.0639098!10155-103A2;0.165405!10038-101F2;0.103805!10838-111E1;0.209134!10759-110E3;0.571715!10514-107E1;0.43322!10465-106H6;0.361994!10691-109F7;0.145211!10843-111E6;0.0698346!10844-111E7;0.605574!11747-123G1;0.347229!11748-123G2;0.287699!11749-123G3;0.914709!11750-123G4;0.359881!11751-123G5;0.622742!11840-124H4;0.452246!11752-123G6;0.286919!11753-123G7;0.943089!11754-123G8;0.88034!11755-123G9;0.865959!11756-123H1;0.641413!11833-124G6;0.203094!11760-123H5;0.243652!11836-124G9;0.249854!11758-123H3;0.667183!11835-124G8;0.84099!11762-123H7;0.519661!11838-124H2;0.859775!11757-123H2;0.86654!11759-123H4;0.547689!11761-123H6;0.179538!11842-124H6;0.0556429!11837-124H1;0.4624!10568-108B1;0.172151!13230-141I8;0.492968!13231-141I9;0.820233!10696-109G3;0.634436!10493-107B7;0.00373856!10494-107B8;0.60618!10850-111F4;0.652158!10851-111F5;0.191627!10852-111F6;0.115561!10853-111F7;0.298206!10854-111F8;0.154031!10855-111F9;0.170078!10856-111G1;0.00536064!10847-111F1;0.0143817!10846-111E9;0.0629894!10848-111F2;0.0230362!10845-111E8;0.0306366!10857-111G2;0.547584!10858-111G3;0.0194764!10156-103A3;0.0284029!11901-125F2;0.0689367!11902-125F3;0.00719836!11903-125F4;0.0970958!10689-109F5;0.173771!10648-109A9;0.896082!10784-110H1;0.00941626!10744-110C6;0.247942!10772-110F7;0.250879!10474-106I6;0.0298059!10600-108E6;0.37302!10684-109E9;0.589989!12226-129F3;0.327246!12227-129F4;0.593767!10508-107D4;0.0165116!10539-107G8;0.21594!10607-108F4;0.285587!10555-107I6;0.807578!10774-110F9;0.299884!10637-108I7;0.0332541!10663-109C6;0.0421986!10728-110A8;0.430985!10729-110A9;0.407618!10430-106D7;0.60477!10730-110B1;0.791465!10813-111B3;0.95548!10812-111B2;0.286459!10037-101F1;0.20809!10172-103C1;0.120557!10163-103B1;0.0484951!10076-102A4;0.0457798!10073-102A1;0.172899!10036-101E9;0.0424335!10195-103E6;0.18683!10277-104E7;0.124935!10434-106E2;0.0822864!10550-107I1;0.150316!10545-107H5;0.255602!10544-107H4;0.0513539!10704-109H2;0.189375!10510-107D6;0.849464!10558-107I9;0.683197!10020-101D2;0.875247!10732-110B3;0.0433918!10049-101G4;0.58112!10698-109G5;0.0210899!10437-106E5;0.471695!10417-106C3;0.189729!10035-101E8;0.649318!10171-103B9;0.122381!10157-103A4;0.0734065!10034-101E7;0.0548423!10072-101I9;0.131239!10199-103F1;0.0276384!10200-103F2;0.333939!10697-109G4;0.665195!10723-110A3;0.167311!10179-103C8;0.0597264!10160-103A7;0.0189728!10180-103C9;0.0119548!10162-103A9;0.0378385!10021-101D3;0.0111118!10840-111E3;0.0914115!10706-109H4;0.753103!10033-101E6;0.371863!10032-101E5;0.13339!10490-107B4;0.180444!10439-106E7;0.0665066!10022-101D4;0.222701!10176-103C5;0.261054!10469-106I1;0.0670964!10067-101I4;0.964783!10411-106B6;0.245252!10471-106I3;0.063214!10030-101E3;0.845746!10475-106I7;0.266352!10787-110H4;0.630958!10477-106I9;0.199598!10695-109G2;0.107908!11771-123I7;0.000737143!11772-123I8;0.0192781!11773-123I9;0.0430631!10093-102C3;0.133157!10442-106F1;0.541975!10442-106F1;0.624795!10201-103F3;0.749081!10639-108I9;0.16193!11843-124H7;0.947716!11841-124H5;0.21724!10693-109F9;0.159513!10436-106E4;0.131291!10483-107A6;0.0419492!10282-104F3;0.0128828!10023-101D5;0.934541!10066-101I3;0.832434!10065-101I2;0.967758!10800-110I8;0.423677!10610-108F7;0.594154!10841-111E4;0.558519!10541-107H1;0.483538!10842-111E5;0.600466!10562-108A4;0.23803!10024-101D6;0.833284!10064-101I1;0.8409!10609-108F6;0.841649!10048-101G3;0.505067!10781-110G7;0.15902!10181-103D1;0.691342!10159-103A6;0.07343!10056-101H2;0.0289231!10737-110B8;0.219138!10025-101D7;0.289153!10044-101F8;0.419168!10424-106D1;0.375714!10463-106H4;0.549749!10616-108G4;0.286156!10486-107A9;0.419246!10062-101H8;0.43976!10202-103F4;0.317665!10158-103A5;0.901981!10441-106E9;0.0982745!10031-101E4;0.274291!10063-101H9;0.229463!10063-101H9;0.0398211!11763-123H8;0.250268!11765-123I1;0.794926!11768-123I4;0.461048!10807-111A6;0.695159!10790-110H7;0.40831!10798-110I6;0.46274!10786-110H3;0.100057!10591-108D6;0.459685!10593-108D8;0.502453!10590-108D5;0.00327888!10026-101D8;0.89165!10096-102C6;0.466704!10168-103B6;0.655278!10154-103A1;0.0925375!10209-103G2;0.0665306!10061-101H7;0.856563!10027-101D9;0.631483!10043-101F7;0.136817!10783-110G9;0.012736!10028-101E1;0.209477!10060-101H6;0.702341!10203-103F5;0.549454!10059-101H5;0.764118!10047-101G2;0.981604!10029-101E2;0.991628!10058-101H4;0.795711!10418-106C4;0.511821!10492-107B6;0.848112!10694-109G1;0.487186!10797-110I5;0.0104555!10057-101H3;0.0596925!10100-102D1;0.364651!10055-101H1;0.0783643!10204-103F6;0.187163!10191-103E2;0.00228313!10563-108A5;0.714802
|name=motif_GNCATG
|name=motif_GNCATG
|tomtom_result=TP53#MA0106.1;9;0.00159752;0.76042;0.920902;6;GACATG;ACATGCCCGGGCATGTCCGG;-!NFE2L1::MafG#MA0089.1;0;0.00193467;0.920902;0.920902;6;GACATG;GTCATG;-!Pax2#MA0067.1;1;0.00989804;4.71147;1;6;GACATG;AGTCACGG;+!ZAP1#MA0440.1;9;0.0140261;6.6764;1;6;GACATG;ACCTTAAAGGTCATG;+!ESR1#MA0112.1;3;0.0189291;9.01026;1;6;GACATG;GGGGTCACGGTGACCTGG;-!YY1#MA0095.1;0;0.0190516;9.06857;1;6;GACATG;GCCATC;+!SOK2#MA0385.1;0;0.0201986;9.61455;1;6;GACATG;TGCCTGCAGGT;-!Pou5f1#MA0142.1;4;0.0206478;9.82834;1;6;GACATG;CTTTGTTATGCAAAT;+
}}
}}

Latest revision as of 13:17, 7 September 2012

Full Name: motif_GNCATG

Motif matrix
POACGT
010082720
022068206820682068
030827200
048272000
050008272
060082720

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TP53#MA0106.190.001597520.760420.9209026GACATGACATGCCCGGGCATGTCCGG-
NFE2L1::MafG#MA0089.100.001934670.9209020.9209026GACATGGTCATG-
Pax2#MA0067.110.009898044.7114716GACATGAGTCACGG+
ZAP1#MA0440.190.01402616.676416GACATGACCTTAAAGGTCATG+
ESR1#MA0112.130.01892919.0102616GACATGGGGGTCACGGTGACCTGG-
YY1#MA0095.100.01905169.0685716GACATGGCCATC+
SOK2#MA0385.100.02019869.6145516GACATGTGCCTGCAGGT-
Pou5f1#MA0142.140.02064789.8283416GACATGCTTTGTTATGCAAAT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_GNCATG&oldid=2133951"