MacroAPE 1083:GGGAATTTTTG,motif407: Difference between revisions
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(Created page with "{{Macroape_1083
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89-110H6;0.248118!10828-111C9;0.320152!10788-110H5;0.993156!10792-110H9;0.453268!10765-110E9;0.292839!10829-111D1;0.159838!10830-111D2;0.0259668!10831-111D3;0.577393!10832-111D4;0.74159!10833-111D5;0.112541!10764-110E8;0.0996895!10770-110F5;0.101456!10399-106A3;0.0296027!10400-106A4;0.119081!10405-106A9;0.105762!10834-111D6;0.158702!10835-111D7;0.0357202!10836-111D8;0.0283653!10837-111D9;0.613327!10699-109G6;0.315144!10802-111A1;0.264735!10796-110I4;0.13678!10010-101C1;0.367968!10810-111A9;0.208354!10421-106C7;0.044161!10708-109H6;0.0235846!12235-129G3;0.176545!12236-129G4;0.447796!12237-129G5;0.222381!10167-103B5;0.347548!10151-102I7;0.149818!10428-106D5;0.427406!10795-110I3;0.264296!10805-111A4;0.318333!10052-101G7;0.539827!10189-103D9;0.677577!10589-108D4;0.689456!10425-106D2;0.208423!10427-106D4;0.75567!10702-109G9;0.68138!10432-106D9;0.701326!10496-107C1;0.996896!10718-109I7;0.758811!10011-101C2;0.185595!10053-101G8;0.614256!10686-109F2;0.481607!10084-102B3;0.318018!10012-101C3;0.229093!10085-102B4;0.122024!10482-107A5;0.275837!10419-106C5;0.423911!10080-102A8;0.119131!10760-110E4;0.139986!10709-109H7;0.0769623!10710-109H8;0.535827!10703-109H1;0.869162!10719-109I8;0.236412!10642-109A3;0.588106!10177-103C6;0.832583!10164-103B2;0.582983!10173-103C2;0.290613!10166-103B4;0.0882487!10083-102B2;0.120907!10188-103D8;0.0317463!10552-107I3;0.185976!10553-107I4;0.613245!10013-101C4;0.82124!10536-107G5;0.677616!10618-108G6;0.195855!10423-106C9;0.170201!10785-110H2;0.442399!12238-129G6;0.724895!12239-129G7;0.994106!12240-129G8;0.851977!10416-106C2;0.981265!10801-110I9;0.00230216!10766-110F1;0.361479!10824-111C5;0.375705!10825-111C6;0.846012!10826-111C7;0.792999!10454-106G4;0.514141!10409-106B4;0.758236!10638-108I8;0.740423!10636-108I6;0.212495!10513-107D9;0.506626!10420-106C6;0.730339!10082-102B1;0.142722!10014-101C5;0.752514!10070-101I7;0.899354!10452-106G2;0.707856!10453-106G3;0.0743049!10449-106F8;0.407456!10042-101F6;0.498224!10069-101I6;0.621648!10193-103E4;0.328157!10631-108I1;0.247032!10438-106E6;0.0378271!10488-107B2;0.713697!10196-103E7;0.499894!10071-101I8;0.866938!10071-101I8;0.563035!10041-101F5;0.186477!10451-106G1;0.405122!10450-106F9;0.327993!10604-108F1;0.793407!10605-108F2;0.396557!10606-108F3;0.123855!10603-108E9;0.220145!10497-107C2;0.142014!10448-106F7;0.0655538!10643-109A4;0.644052!10426-106D3;0.180305!10431-106D8;0.400445!10197-103E8;0.404817!10443-106F2;0.226507!10815-111B5;0.163664!10816-111B6;0.824942!10817-111B7;0.761557!10015-101C6;0.711605!10410-106B5;0.540809!10054-101G9;0.0632864!10758-110E2;0.388996!10711-109H9;0.893263!10040-101F4;0.189229!10470-106I2;0.0805398!10415-106C1;0.479881!10198-103E9;0.0962095!10614-108G2;0.916275!10612-108F9;0.472815!10549-107H9;0.89892!10615-108G3;0.47407!10487-107B1;0.815194!10433-106E1;0.580787!10688-109F4;0.0102118!10444-106F3;0.796422!10444-106F3;0.0787672!10485-107A8;0.0634143!10413-106B8;0.581585!10175-103C4;0.220358!10161-103A8;0.585431!12131-128D7;0.877095!10624-108H3;0.595647!10712-109I1;0.457877!10205-103F7;0.935884!10206-103F8;0.279318!10207-103F9;0.785483!10050-101G5;0.0070258!10051-101G6;0.462335!10016-101C7;0.52421!10046-101G1;0.505136!10778-110G4;0.497974!10633-108I3;0.120407!10818-111B8;0.585001!10819-111B9;0.908958!10820-111C1;0.963239!10484-107A7;0.84947!10808-111A7;0.337346!10169-103B7;0.213759!10153-102I9;0.28437!13425-144D5;0.730945!13433-144E4;0.958999!13437-144E8;0.88296!11904-125F5;0.712668!11905-125F6;0.198149!10039-101F3;0.211284!10791-110H8;0.10497!10017-101C8;0.556776!10045-101F9;0.982347!10509-107D5;0.073034!10839-111E2;0.623657!10692-109F8;0.533116!10079-102A7;0.629929!10078-102A6;0.355482!10721-110A1;0.497818!10569-108B2;0.334331!10570-108B3;0.8546!10571-108B4;0.888257!10647-109A8;0.901973!10752-110D5;0.0174027!10782-110G8;0.731554!10726-110A6;0.287025!10018-101C9;0.123835!10086-102B5;0.287902!10182-103D2;0.18618!10165-103B3;0.552481!10499-107C4;0.63984!10408-106B3;0.491415!10019-101D1;0.758066!10068-101I5;0.92385!10075-102A3;0.977989!10077-102A5;0.667456!10727-110A7;0.682066!10775-110G1;0.390266!10412-106B7;0.689716!12231-129F8;0.944053!12232-129F9;0.321349!12233-129G1;0.317516!12234-129G2;0.227167!10414-106B9;0.288327!10170-103B8;0.126529!10183-103D3;0.174206!10150-102I6;0.106292!10174-103C3;0.246917!10155-103A2;0.772097!10038-101F2;0.898604!10838-111E1;0.906791!10759-110E3;0.811891!10514-107E1;0.617654!10465-106H6;0.323614!10691-109F7;0.487375!10843-111E6;0.067904!10844-111E7;0.33805!11747-123G1;0.932669!11748-123G2;0.897756!11749-123G3;0.835808!11750-123G4;0.449169!11751-123G5;0.523776!11840-124H4;0.914571!11752-123G6;0.950494!11753-123G7;0.2673!11754-123G8;0.416742!11755-123G9;0.40766!11756-123H1;0.210108!11833-124G6;0.13541!11760-123H5;0.156742!11836-124G9;0.227583!11758-123H3;0.352321!11835-124G8;0.423728!11762-123H7;0.227774!11838-124H2;0.163462!11757-123H2;0.0605955!11759-123H4;0.26624!11761-123H6;0.0860051!11842-124H6;0.311182!11837-124H1;0.111267!10568-108B1;0.102072!13230-141I8;0.456241!13231-141I9;0.41867!10696-109G3;0.391225!10493-107B7;0.546299!10494-107B8;0.333227!10850-111F4;0.158613!10851-111F5;0.496888!10852-111F6;0.131671!10853-111F7;0.351534!10854-111F8;0.809259!10855-111F9;0.883767!10856-111G1;0.958573!10847-111F1;0.351788!10846-111E9;0.354578!10848-111F2;0.375728!10845-111E8;0.376892!10857-111G2;0.591713!10858-111G3;0.2041!10156-103A3;0.552961!11901-125F2;0.367636!11902-125F3;0.610324!11903-125F4;0.76602!10689-109F5;0.835112!10648-109A9;0.132276!10784-110H1;0.349422!10744-110C6;0.983727!10772-110F7;0.396668!10474-106I6;0.228242!10600-108E6;0.134397!10684-109E9;0.277128!12226-129F3;0.0489444!12227-129F4;0.253091!10508-107D4;0.646289!10539-107G8;0.0208366!10607-108F4;0.114221!10555-107I6;0.193895!10774-110F9;0.228916!10637-108I7;0.443804!10663-109C6;0.954333!10728-110A8;0.323267!10729-110A9;0.360845!10430-106D7;0.505408!10730-110B1;0.238843!10813-111B3;0.595796!10812-111B2;0.398373!10037-101F1;0.534314!10172-103C1;0.128524!10163-103B1;0.19568!10076-102A4;0.589947!10073-102A1;0.0988451!10036-101E9;0.232979!10195-103E6;0.144949!10277-104E7;0.134261!10434-106E2;0.589891!10550-107I1;0.211629!10545-107H5;0.400425!10544-107H4;0.558109!10704-109H2;0.219687!10510-107D6;0.944711!10558-107I9;0.0803908!10020-101D2;0.617617!10732-110B3;0.729873!10049-101G4;0.142964!10698-109G5;0.673198!10437-106E5;0.912049!10417-106C3;0.544297!10035-101E8;0.262253!10171-103B9;0.163947!10157-103A4;0.210091!10034-101E7;0.341194!10072-101I9;0.141233!10199-103F1;0.259699!10200-103F2;0.341993!10697-109G4;0.331854!10723-110A3;0.781866!10179-103C8;0.576097!10160-103A7;0.450902!10180-103C9;0.320397!10162-103A9;0.0140965!10021-101D3;0.125445!10840-111E3;0.878514!10706-109H4;0.203507!10033-101E6;0.376682!10032-101E5;0.190828!10490-107B4;0.144629!10439-106E7;0.822201!10022-101D4;0.727485!10176-103C5;0.991687!10469-106I1;0.206122!10067-101I4;0.923486!10411-106B6;0.322899!10471-106I3;0.0548813!10030-101E3;0.0384559!10475-106I7;0.5752!10787-110H4;0.936202!10477-106I9;0.569984!10695-109G2;0.924162!11771-123I7;0.552667!11772-123I8;0.543542!11773-123I9;0.221276!10093-102C3;0.733069!10442-106F1;0.774835!10442-106F1;0.0107253!10201-103F3;0.00953195!10639-108I9;0.783528!11843-124H7;0.225566!11841-124H5;0.309995!10693-109F9;0.754657!10436-106E4;0.725788!10483-107A6;0.486465!10282-104F3;0.40144!10023-101D5;0.413413!10066-101I3;0.187243!10065-101I2;0.216479!10800-110I8;0.493161!10610-108F7;0.327614!10841-111E4;0.130156!10541-107H1;0.267303!10842-111E5;0.026734!10562-108A4;0.924192!10024-101D6;0.47658!10064-101I1;0.966336!10609-108F6;0.832022!10048-101G3;0.613078!10781-110G7;0.70523!10181-103D1;0.718837!10159-103A6;0.831172!10056-101H2;0.845906!10737-110B8;0.820699!10025-101D7;0.322251!10044-101F8;0.988516!10424-106D1;0.423054!10463-106H4;0.452696!10616-108G4;0.823831!10486-107A9;0.678205!10062-101H8;0.385604!10202-103F4;0.607838!10158-103A5;0.869018!10441-106E9;0.980869!10031-101E4;0.241172!10063-101H9;0.177939!10063-101H9;0.213309!11763-123H8;0.253054!11765-123I1;0.862804!11768-123I4;0.283331!10807-111A6;0.971032!10790-110H7;0.728801!10798-110I6;0.972056!10786-110H3;0.0237872!10591-108D6;0.870899!10593-108D8;0.99754!10590-108D5;0.819632!10026-101D8;0.81915!10096-102C6;0.22723!10168-103B6;0.000782297!10154-103A1;0.380914!10209-103G2;0.837247!10061-101H7;0.773033!10027-101D9;0.939825!10043-101F7;0.628215!10783-110G9;0.903362!10028-101E1;0.661744!10060-101H6;0.963672!10203-103F5;0.829419!10059-101H5;0.415413!10047-101G2;0.898517!10029-101E2;0.773616!10058-101H4;0.397639!10418-106C4;0.880673!10492-107B6;0.489604!10694-109G1;0.0596949!10797-110I5;0.0769071!10057-101H3;0.592991!10100-102D1;0.416533!10055-101H1;0.745102!10204-103F6;0.722123!10191-103E2;0.274257!10563-108A5;0.691167 | ||
|name=GGGAATTTTTG,motif407,CNhs13545,T:661.0(12.32%),B:6092.5(7.54%),P:1e-33 | |name=GGGAATTTTTG,motif407,CNhs13545,T:661.0(12.32%),B:6092.5(7.54%),P:1e-33 | ||
|tomtom_result=RELA#MA0107.1;0;0.00173524;0.825972;0.85027;10;GGGAATTTTTG;GGGAATTTCC;+!Pax4#MA0068.1;19;0.00205327;0.977357;0.85027;11;GGGAATTTTTG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!TEC1#MA0406.1;0;0.00372153;1.77145;0.85027;8;GGGAATTTTTG;GGGAATGT;-!NF-kappaB#MA0061.1;0;0.00413258;1.96711;0.85027;10;GGGAATTTTTG;GGGAATTTCC;+!SUM1#MA0398.1;-1;0.00484755;2.30743;0.85027;9;GGGAATTTTTG;AAAATTTTT;+!REL#MA0101.1;0;0.0053602;2.55146;0.85027;10;GGGAATTTTTG;GGGGATTTCC;+!ARO80#MA0273.1;10;0.00809353;3.85252;0.999747;11;GGGAATTTTTG;GATAATTCTCGGCAAGTATGT;+!LYS14#MA0325.1;1;0.0109756;5.22438;0.999747;7;GGGAATTTTTG;CCGGAATT;+!dl_1#MA0022.1;0;0.0151313;7.20252;0.999747;11;GGGAATTTTTG;GGGGTTTTTCCC;+!Foxd3#MA0041.1;-2;0.0169366;8.06184;0.999747;9;GGGAATTTTTG;GAATGTTTGTTT;+!SUT2#MA0400.1;7;0.0184465;8.78054;0.999747;11;GGGAATTTTTG;AAATTTTCGGAGTTTATCAT;- | |||
}} | }} |
Latest revision as of 13:22, 7 September 2012
Full Name: GGGAATTTTTG,motif407,CNhs13545,T:661.0(12.32%),B:6092.5(7.54%),P:1e-33
Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
RELA#MA0107.1 | 0 | 0.00173524 | 0.825972 | 0.85027 | 10 | GGGAATTTTTG | GGGAATTTCC | + |
Pax4#MA0068.1 | 19 | 0.00205327 | 0.977357 | 0.85027 | 11 | GGGAATTTTTG | GGGGGGGGAGTGGAGTATTGGAAATTTTTC | - |
TEC1#MA0406.1 | 0 | 0.00372153 | 1.77145 | 0.85027 | 8 | GGGAATTTTTG | GGGAATGT | - |
NF-kappaB#MA0061.1 | 0 | 0.00413258 | 1.96711 | 0.85027 | 10 | GGGAATTTTTG | GGGAATTTCC | + |
SUM1#MA0398.1 | -1 | 0.00484755 | 2.30743 | 0.85027 | 9 | GGGAATTTTTG | AAAATTTTT | + |
REL#MA0101.1 | 0 | 0.0053602 | 2.55146 | 0.85027 | 10 | GGGAATTTTTG | GGGGATTTCC | + |
ARO80#MA0273.1 | 10 | 0.00809353 | 3.85252 | 0.999747 | 11 | GGGAATTTTTG | GATAATTCTCGGCAAGTATGT | + |
LYS14#MA0325.1 | 1 | 0.0109756 | 5.22438 | 0.999747 | 7 | GGGAATTTTTG | CCGGAATT | + |
dl_1#MA0022.1 | 0 | 0.0151313 | 7.20252 | 0.999747 | 11 | GGGAATTTTTG | GGGGTTTTTCCC | + |
Foxd3#MA0041.1 | -2 | 0.0169366 | 8.06184 | 0.999747 | 9 | GGGAATTTTTG | GAATGTTTGTTT | + |
SUT2#MA0400.1 | 7 | 0.0184465 | 8.78054 | 0.999747 | 11 | GGGAATTTTTG | AAATTTTCGGAGTTTATCAT | - |