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MacroAPE 1083:AIRE f2: Difference between revisions

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6!10464-106H5;0.784458!10827-111C8;0.769439!10789-110H6;0.496056!10828-111C9;0.678016!10788-110H5;0.345832!10792-110H9;0.367223!10765-110E9;0.558306!10829-111D1;0.713735!10830-111D2;0.203742!10831-111D3;0.620839!10832-111D4;0.674899!10833-111D5;0.291534!10764-110E8;0.247957!10770-110F5;0.376702!10399-106A3;0.727458!10400-106A4;0.361787!10405-106A9;0.282973!10834-111D6;0.218943!10835-111D7;0.176332!10836-111D8;0.815419!10837-111D9;0.456316!10699-109G6;0.77052!10802-111A1;0.881996!10796-110I4;0.842339!10010-101C1;0.969279!10810-111A9;0.00643919!10421-106C7;0.0782909!10708-109H6;0.916135!12235-129G3;0.675564!12236-129G4;0.064608!12237-129G5;0.0470558!10167-103B5;0.0080525!10151-102I7;0.222886!10428-106D5;0.236384!10795-110I3;0.253992!10805-111A4;0.831118!10052-101G7;0.00600561!10189-103D9;0.0941161!10589-108D4;0.00855622!10425-106D2;0.39716!10427-106D4;0.137704!10702-109G9;0.52526!10432-106D9;0.362116!10496-107C1;0.572669!10718-109I7;0.287421!10011-101C2;0.29235!10053-101G8;0.0497535!10686-109F2;0.67506!10084-102B3;0.00290185!10012-101C3;0.548673!10085-102B4;0.17742!10482-107A5;0.634308!10419-106C5;0.0120233!10080-102A8;0.053647!10760-110E4;0.12016!10709-109H7;0.594833!10710-109H8;0.0113038!10703-109H1;0.289975!10719-109I8;0.652492!10642-109A3;0.423673!10177-103C6;0.464662!10164-103B2;0.521332!10173-103C2;0.304579!10166-103B4;0.300697!10083-102B2;0.113059!10188-103D8;0.145633!10552-107I3;0.300196!10553-107I4;0.766931!10013-101C4;0.0294981!10536-107G5;0.552313!10618-108G6;0.937701!10423-106C9;0.301908!10785-110H2;0.129509!12238-129G6;0.561727!12239-129G7;0.680058!12240-129G8;0.562368!10416-106C2;0.783626!10801-110I9;0.616608!10766-110F1;0.998191!10824-111C5;0.957351!10825-111C6;0.969723!10826-111C7;0.946621!10454-106G4;0.954705!10409-106B4;0.861104!10638-108I8;0.984478!10636-108I6;0.542399!10513-107D9;0.231477!10420-106C6;0.782246!10082-102B1;0.887427!10014-101C5;0.00402502!10070-101I7;0.00363848!10452-106G2;0.0467042!10453-106G3;0.23185!10449-106F8;0.253382!10042-101F6;0.405568!10069-101I6;0.206088!10193-103E4;0.824087!10631-108I1;0.701664!10438-106E6;0.9594!10488-107B2;0.141806!10196-103E7;0.610504!10071-101I8;0.216074!10071-101I8;0.431206!10041-101F5;0.545162!10451-106G1;0.208282!10450-106F9;0.727389!10604-108F1;0.808607!10605-108F2;0.621972!10606-108F3;0.593977!10603-108E9;0.74245!10497-107C2;0.379603!10448-106F7;0.637347!10643-109A4;0.362819!10426-106D3;0.232216!10431-106D8;0.181479!10197-103E8;0.527149!10443-106F2;0.061366!10815-111B5;0.221809!10816-111B6;0.559975!10817-111B7;0.380218!10015-101C6;0.459802!10410-106B5;0.0970738!10054-101G9;0.370516!10758-110E2;0.842873!10711-109H9;0.910578!10040-101F4;0.887044!10470-106I2;0.149843!10415-106C1;0.0111857!10198-103E9;0.474012!10614-108G2;0.0591643!10612-108F9;0.151768!10549-107H9;0.571979!10615-108G3;0.707617!10487-107B1;0.703333!10433-106E1;0.164761!10688-109F4;0.597635!10444-106F3;0.216981!10444-106F3;0.430626!10485-107A8;0.496752!10413-106B8;0.436054!10175-103C4;0.642496!10161-103A8;0.648454!12131-128D7;0.17141!10624-108H3;0.331043!10712-109I1;0.0057571!10205-103F7;0.610935!10206-103F8;0.242013!10207-103F9;0.0420154!10050-101G5;0.0225057!10051-101G6;0.505978!10016-101C7;0.006259!10046-101G1;0.0258393!10778-110G4;0.115777!10633-108I3;0.0280634!10818-111B8;0.94326!10819-111B9;0.855223!10820-111C1;0.898553!10484-107A7;0.79628!10808-111A7;0.717375!10169-103B7;0.370382!10153-102I9;0.73056!13425-144D5;0.21385!13433-144E4;0.229265!13437-144E8;0.521389!11904-125F5;0.326891!11905-125F6;0.547412!10039-101F3;0.752564!10791-110H8;0.147467!10017-101C8;0.174355!10045-101F9;0.158023!10509-107D5;0.228765!10839-111E2;0.382107!10692-109F8;0.108688!10079-102A7;0.411008!10078-102A6;0.0880798!10721-110A1;0.0367766!10569-108B2;2.81104e-07!10570-108B3;0.997917!10571-108B4;0.306845!10647-109A8;0.9876!10752-110D5;0.0260163!10782-110G8;0.923619!10726-110A6;0.497887!10018-101C9;0.184061!10086-102B5;0.000583161!10182-103D2;0.0218567!10165-103B3;0.177762!10499-107C4;0.0872363!10408-106B3;0.513948!10019-101D1;0.077074!10068-101I5;0.165437!10075-102A3;0.345236!10077-102A5;0.70304!10727-110A7;0.307432!10775-110G1;0.440548!10412-106B7;0.612632!12231-129F8;0.454035!12232-129F9;0.00708529!12233-129G1;0.00200009!12234-129G2;0.0108188!10414-106B9;0.0202701!10170-103B8;0.529584!10183-103D3;0.182522!10150-102I6;0.301318!10174-103C3;0.122321!10155-103A2;0.161896!10038-101F2;0.0258343!10838-111E1;0.040964!10759-110E3;0.2877!10514-107E1;0.796836!10465-106H6;0.0285617!10691-109F7;0.00652341!10843-111E6;0.0609949!10844-111E7;0.492095!11747-123G1;0.653482!11748-123G2;0.216343!11749-123G3;0.224722!11750-123G4;0.382663!11751-123G5;0.740991!11840-124H4;0.517429!11752-123G6;0.826077!11753-123G7;0.849922!11754-123G8;0.249296!11755-123G9;0.391834!11756-123H1;0.836328!11833-124G6;0.921851!11760-123H5;0.531567!11836-124G9;0.795875!11758-123H3;0.346976!11835-124G8;0.3899!11762-123H7;0.785364!11838-124H2;0.399498!11757-123H2;0.824826!11759-123H4;0.787638!11761-123H6;0.7588!11842-124H6;0.974411!11837-124H1;0.3834!10568-108B1;0.596709!13230-141I8;0.00646652!13231-141I9;0.343903!10696-109G3;0.415366!10493-107B7;0.40733!10494-107B8;0.152417!10850-111F4;0.33554!10851-111F5;0.603597!10852-111F6;0.0127016!10853-111F7;0.445468!10854-111F8;0.0493557!10855-111F9;0.0577285!10856-111G1;0.791601!10847-111F1;0.0971458!10846-111E9;0.337657!10848-111F2;0.168521!10845-111E8;0.821471!10857-111G2;0.435059!10858-111G3;0.245398!10156-103A3;0.524627!11901-125F2;0.0722485!11902-125F3;0.401122!11903-125F4;0.447547!10689-109F5;0.308475!10648-109A9;0.200063!10784-110H1;0.975069!10744-110C6;0.0457684!10772-110F7;0.502391!10474-106I6;0.574019!10600-108E6;0.131648!10684-109E9;0.0174823!12226-129F3;0.516314!12227-129F4;0.774991!10508-107D4;0.2977!10539-107G8;0.861564!10607-108F4;0.620259!10555-107I6;0.583209!10774-110F9;0.600979!10637-108I7;0.824162!10663-109C6;0.940908!10728-110A8;0.786903!10729-110A9;0.0656132!10430-106D7;0.00991581!10730-110B1;0.450824!10813-111B3;0.69965!10812-111B2;0.0268307!10037-101F1;0.301527!10172-103C1;0.212872!10163-103B1;0.380902!10076-102A4;0.106389!10073-102A1;0.462267!10036-101E9;0.591606!10195-103E6;0.266528!10277-104E7;0.227773!10434-106E2;0.438383!10550-107I1;0.550722!10545-107H5;0.573496!10544-107H4;0.0360501!10704-109H2;0.292686!10510-107D6;0.00421588!10558-107I9;0.895066!10020-101D2;0.27495!10732-110B3;0.261686!10049-101G4;0.0126799!10698-109G5;0.589773!10437-106E5;0.180872!10417-106C3;0.142915!10035-101E8;0.951541!10171-103B9;0.189799!10157-103A4;0.197815!10034-101E7;0.104328!10072-101I9;0.152136!10199-103F1;0.352657!10200-103F2;0.695486!10697-109G4;0.104368!10723-110A3;0.464072!10179-103C8;0.944443!10160-103A7;0.305924!10180-103C9;0.423043!10162-103A9;0.880088!10021-101D3;0.518882!10840-111E3;0.425564!10706-109H4;0.702067!10033-101E6;0.249608!10032-101E5;0.0235797!10490-107B4;0.271348!10439-106E7;0.4727!10022-101D4;0.994669!10176-103C5;0.00511782!10469-106I1;0.308612!10067-101I4;0.722726!10411-106B6;0.40891!10471-106I3;0.440276!10030-101E3;0.670609!10475-106I7;0.0214109!10787-110H4;0.440033!10477-106I9;0.185905!10695-109G2;0.774805!11771-123I7;0.146246!11772-123I8;0.534219!11773-123I9;0.896042!10093-102C3;0.00871866!10442-106F1;0.633276!10442-106F1;0.0571786!10201-103F3;0.0611149!10639-108I9;0.229069!11843-124H7;0.460953!11841-124H5;0.932847!10693-109F9;0.228374!10436-106E4;0.406969!10483-107A6;0.863877!10282-104F3;0.796187!10023-101D5;0.0729293!10066-101I3;0.00670038!10065-101I2;0.838198!10800-110I8;0.953377!10610-108F7;0.580443!10841-111E4;0.861483!10541-107H1;0.693896!10842-111E5;0.134676!10562-108A4;0.329581!10024-101D6;0.437137!10064-101I1;0.00772968!10609-108F6;0.827038!10048-101G3;0.333209!10781-110G7;0.0693866!10181-103D1;0.377144!10159-103A6;0.0479658!10056-101H2;0.0219373!10737-110B8;0.631089!10025-101D7;0.00276046!10044-101F8;0.199989!10424-106D1;0.105211!10463-106H4;0.79234!10616-108G4;0.244382!10486-107A9;0.661594!10062-101H8;0.502903!10202-103F4;0.816516!10158-103A5;0.179858!10441-106E9;0.089882!10031-101E4;0.216942!10063-101H9;0.287493!10063-101H9;0.36647!11763-123H8;0.453145!11765-123I1;0.115816!11768-123I4;0.322313!10807-111A6;0.0463737!10790-110H7;0.946786!10798-110I6;0.832146!10786-110H3;0.739274!10591-108D6;0.34764!10593-108D8;0.873157!10590-108D5;0.611694!10026-101D8;0.198199!10096-102C6;0.40446!10168-103B6;0.441033!10154-103A1;0.319669!10209-103G2;0.156305!10061-101H7;0.526489!10027-101D9;0.919552!10043-101F7;0.937428!10783-110G9;0.460429!10028-101E1;2.95556e-05!10060-101H6;0.322712!10203-103F5;0.91987!10059-101H5;0.195887!10047-101G2;0.707153!10029-101E2;0.0165883!10058-101H4;0.0881748!10418-106C4;0.986457!10492-107B6;0.540009!10694-109G1;0.696795!10797-110I5;0.168565!10057-101H3;0.704441!10100-102D1;0.948271!10055-101H1;0.192792!10204-103F6;0.403285!10191-103E2;0.109938!10563-108A5;0.0404608
|name=AIRE_f2
|name=AIRE_f2
|tomtom_result=Pax4#MA0068.1;7;0.000481634;0.229258;0.458399;18;ATTGGTTTTATTGGTTAA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!NHP6B#MA0346.1;2;0.00232342;1.10595;0.670068;18;ATTGGTTTTATTGGTTAA;TCATATTATATATAAATAAA;-!NHP6A#MA0345.1;3;0.00252763;1.20315;0.670068;18;ATTGGTTTTATTGGTTAA;TCATTTTTATATATAGGTCAT;-!squamosa#MA0082.1;0;0.00301896;1.43702;0.670068;14;ATTGGTTTTATTGGTTAA;ATTTCCATTTTTGG;-!AGL3#MA0001.1;-4;0.00352015;1.67559;0.670068;10;ATTGGTTTTATTGGTTAA;CTATTTATGG;-!Tal1::Gata1#MA0140.1;-1;0.00534101;2.54232;0.749075;17;ATTGGTTTTATTGGTTAA;CTGGTGGGGACAGATAAG;+!myb.Ph3#MA0054.1;-8;0.00569414;2.71041;0.749075;9;ATTGGTTTTATTGGTTAA;AAACGGTTA;-!HAP4#MA0315.1;0;0.00763968;3.63649;0.749075;15;ATTGGTTTTATTGGTTAA;TCGCCTCTGATTGGT;-!RGT1#MA0367.1;-1;0.00958716;4.56349;0.749075;11;ATTGGTTTTATTGGTTAA;CCGGAAAAACT;-!HAP2#MA0313.1;-1;0.00995105;4.7367;0.749075;5;ATTGGTTTTATTGGTTAA;TTGGT;+!RUNX1#MA0002.1;-6;0.0101547;4.83366;0.749075;11;ATTGGTTTTATTGGTTAA;TATTGTGGTTA;+!SMP1#MA0383.1;4;0.0105906;5.04112;0.749075;17;ATTGGTTTTATTGGTTAA;TGCTAATTTAATTATAGGTAA;-!SRY#MA0084.1;-9;0.011504;5.4759;0.749075;9;ATTGGTTTTATTGGTTAA;ATTGTTTAC;-!AG#MA0005.1;-3;0.0127489;6.06846;0.749075;11;ATTGGTTTTATTGGTTAA;ACCAAATTTGG;-!Hltf#MA0109.1;-6;0.0132152;6.29045;0.749075;10;ATTGGTTTTATTGGTTAA;ATATAAGGTT;-!Tcfcp2l1#MA0145.1;0;0.0133797;6.36875;0.749075;14;ATTGGTTTTATTGGTTAA;CTGGTTTGAACTGG;-!NR3C1#MA0113.1;0;0.0155551;7.40422;0.822483;18;ATTGGTTTTATTGGTTAA;TCAGGACATAATGTTCCC;-!ABF1#MA0265.1;-2;0.0198126;9.43081;0.979772;16;ATTGGTTTTATTGGTTAA;TCGTATAAAGTGATAA;+!Foxa2#MA0047.2;-2;0.020637;9.82322;0.979772;12;ATTGGTTTTATTGGTTAA;TGTTTACTTAGG;+
}}
}}

Latest revision as of 11:52, 7 September 2012

Full Name: AIRE_f2

Motif matrix
POACGT
116.42857142857148410.7959183673469535.16326530612246258.918367346938803
27.510204081632687.510204081632685.63265306122448920.65306122448985
35.6326530612244895.6326530612244898.44897959183677621.591836734693906
41.8775510204081660.036.6122448979592652.8163265306122534
50.00.033.795918367346987.51020408163268
613.142857142857171.8775510204081660.93877551020408325.346938775510242
715.9591836734694153.7551020408163360.93877551020408320.65306122448985
815.020408163265365.6326530612244895.63265306122448915.02040816326536
914.0816326530612652.81632653061225345.63265306122448918.775510204081698
1021.5918367346939453.7551020408163365.63265306122448910.326530612244925
1115.9591836734694151.8775510204081662.816326530612253420.65306122448985
129.387755102040835.6326530612244892.816326530612253423.469387755102094
130.00.93877551020408336.6122448979592653.755102040816336
140.00.040.367346938775560.938775510204083
159.387755102040833.75510204081633610.32653061224492517.836734693877606
162.81632653061225347.510204081632687.5102040816326823.469387755102094
1718.775510204081660.9387755102040836.57142857142858515.02040816326536
1816.66326530612249711.0306122448980064.459183673469389.153061224489816

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax4#MA0068.170.0004816340.2292580.45839918ATTGGTTTTATTGGTTAAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
NHP6B#MA0346.120.002323421.105950.67006818ATTGGTTTTATTGGTTAATCATATTATATATAAATAAA-
NHP6A#MA0345.130.002527631.203150.67006818ATTGGTTTTATTGGTTAATCATTTTTATATATAGGTCAT-
squamosa#MA0082.100.003018961.437020.67006814ATTGGTTTTATTGGTTAAATTTCCATTTTTGG-
AGL3#MA0001.1-40.003520151.675590.67006810ATTGGTTTTATTGGTTAACTATTTATGG-
Tal1::Gata1#MA0140.1-10.005341012.542320.74907517ATTGGTTTTATTGGTTAACTGGTGGGGACAGATAAG+
myb.Ph3#MA0054.1-80.005694142.710410.7490759ATTGGTTTTATTGGTTAAAAACGGTTA-
HAP4#MA0315.100.007639683.636490.74907515ATTGGTTTTATTGGTTAATCGCCTCTGATTGGT-
RGT1#MA0367.1-10.009587164.563490.74907511ATTGGTTTTATTGGTTAACCGGAAAAACT-
HAP2#MA0313.1-10.009951054.73670.7490755ATTGGTTTTATTGGTTAATTGGT+
RUNX1#MA0002.1-60.01015474.833660.74907511ATTGGTTTTATTGGTTAATATTGTGGTTA+
SMP1#MA0383.140.01059065.041120.74907517ATTGGTTTTATTGGTTAATGCTAATTTAATTATAGGTAA-
SRY#MA0084.1-90.0115045.47590.7490759ATTGGTTTTATTGGTTAAATTGTTTAC-
AG#MA0005.1-30.01274896.068460.74907511ATTGGTTTTATTGGTTAAACCAAATTTGG-
Hltf#MA0109.1-60.01321526.290450.74907510ATTGGTTTTATTGGTTAAATATAAGGTT-
Tcfcp2l1#MA0145.100.01337976.368750.74907514ATTGGTTTTATTGGTTAACTGGTTTGAACTGG-
NR3C1#MA0113.100.01555517.404220.82248318ATTGGTTTTATTGGTTAATCAGGACATAATGTTCCC-
ABF1#MA0265.1-20.01981269.430810.97977216ATTGGTTTTATTGGTTAATCGTATAAAGTGATAA+
Foxa2#MA0047.2-20.0206379.823220.97977212ATTGGTTTTATTGGTTAATGTTTACTTAGG+
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