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MCL coexpression mm9:2753: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002563!2.51e-07!9;CL:0002251!2.51e-07!9;CL:0002076!7.80e-07!15
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005409!1.18e-15!47;UBERON:0000160!1.59e-15!31;UBERON:0000344!1.82e-11!15;UBERON:0001242!3.93e-10!13;UBERON:0000060!3.93e-10!13;UBERON:0001262!3.93e-10!13;UBERON:0004786!3.93e-10!13;UBERON:0004923!2.61e-08!24;UBERON:0003350!2.51e-07!9;UBERON:0004808!2.51e-07!9;UBERON:0001277!2.51e-07!9;UBERON:0003102!5.32e-07!22
}}
}}

Revision as of 18:58, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:98950576..98950589,-p2@Tns4
Mm9::chr11:98950590..98950603,-p3@Tns4
Mm9::chr11:98950610..98950632,-p1@Tns4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
intestinal epithelial cell2.51e-079
epithelial cell of alimentary canal2.51e-079
endo-epithelial cell7.80e-0715

Uber Anatomy
Ontology termp-valuen
gastrointestinal system1.18e-1547
intestine1.59e-1531
mucosa1.82e-1115
intestinal mucosa3.93e-1013
anatomical wall3.93e-1013
wall of intestine3.93e-1013
gastrointestinal system mucosa3.93e-1013
organ component layer2.61e-0824
epithelium of mucosa2.51e-079
gastrointestinal system epithelium2.51e-079
intestinal epithelium2.51e-079
surface structure5.32e-0722


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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