FFCP PHASE1:Mm9::chr5:104475999..104476063,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74167|HGNC=|MCL_coexpression_id=0|UniProt=Q8BVU5|association_with_transcript=0bp_to_NM_028794,uc008yka.1_5end|description=CAGE_peak_2_at_Nudt9_5end|id=chr5:104475999..104476063,+|ontology_enrichment_celltype=CL:0000333!1.81e-07!10;CL:0000095!1.81e-07!10;CL:0000243!1.81e-07!10;CL:0000123!1.81e-07!10;CL:0000125!1.81e-07!10;CL:0000030!1.81e-07!10;CL:0000339!1.81e-07!10|ontology_enrichment_celltype_v019_2=CL:0000333,1.81e-07,10;CL:0000095,1.81e-07,10;CL:0000243,1.81e-07,10;CL:0000123,1.81e-07,10;CL:0000125,1.81e-07,10;CL:0000030,1.81e-07,10;CL:0000339,1.81e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005256!4.00e-10!47;UBERON:0005172!5.09e-10!49;UBERON:0005173!5.09e-10!49;UBERON:0002417!5.09e-10!49;UBERON:0000916!5.09e-10!49;UBERON:0009854!2.33e-09!23;UBERON:0009856!2.33e-09!23;UBERON:0002107!3.34e-09!22;UBERON:0007499!3.34e-09!22;UBERON:0006925!3.34e-09!22;UBERON:0009497!3.34e-09!22;UBERON:0000015!3.34e-09!22;UBERON:0002423!3.34e-09!22;UBERON:0006235!3.34e-09!22;UBERON:0008835!3.34e-09!22;UBERON:0003894!3.34e-09!22;UBERON:0004161!3.34e-09!22;UBERON:0008836!3.34e-09!22;UBERON:0002365!1.42e-08!25;UBERON:0002330!1.42e-08!25;UBERON:0003914!3.19e-08!47;UBERON:0009569!5.18e-08!66;UBERON:0002100!1.04e-07!98;UBERON:0005177!5.62e-07!85;UBERON:0000466!9.79e-07!79|ontology_enrichment_uberon_v019_2=UBERON:0005172,5.09e-10,49;UBERON:0005173,5.09e-10,49;UBERON:0002417,5.09e-10,49;UBERON:0000916,5.09e-10,49;UBERON:0003104,5.89e-10,61;UBERON:0009142,5.89e-10,61;UBERON:0005256,1.12e-09,45;UBERON:0009854,2.33e-09,23;UBERON:0009856,2.33e-09,23;UBERON:0002107,3.34e-09,22;UBERON:0007499,3.34e-09,22;UBERON:0006925,3.34e-09,22;UBERON:0009497,3.34e-09,22;UBERON:0000015,3.34e-09,22;UBERON:0002423,3.34e-09,22;UBERON:0006235,3.34e-09,22;UBERON:0008835,3.34e-09,22;UBERON:0003894,3.34e-09,22;UBERON:0004161,3.34e-09,22;UBERON:0008836,3.34e-09,22;UBERON:0002365,1.42e-08,25;UBERON:0002330,1.42e-08,25;UBERON:0003914,3.19e-08,47;UBERON:0005409,3.61e-08,47;UBERON:0009569,5.18e-08,66;UBERON:0002100,3.39e-07,90;UBERON:0000160,6.73e-07,31;UBERON:0005177,6.85e-07,79|phase1_expression=10.7299727560212,20.5895490507223,17.2899710968024,19.9626379462508,21.0376206577466,9.06548068324205,11.9142446703718,2.58246646883153,3.801295498095,2.10658073689794,2.91070545983358,1.67521533890206,2.9104124088305,2.01066925563694,26.648780945253,23.8920815519995,57.364074006508,4.25873923233621,3.29074640653773,3.81950686618227,55.1930953080443,4.46809280403984,3.91799683708403,13.9193407830264,16.9762867989706,12.6331032105304,17.230479846363,15.9448712187558,21.2826229791139,21.1705308998342,16.1863272778372,9.52546010189447,2.46025915033828,0,12.4206196493048,13.7974755647549,11.0251452381679,3.76678467663217,5.4693474116666,2.09409497589519,2.35292595212406,1.36609096991689,2.42755176515577,12.0860945256554,12.8748702648783,15.0508336772579,24.2541316747892,43.6050312760893,53.8231147699456,38.3026901176338,32.056890552208,35.9381410912429,3.35565212115473,0.725362142011344,3.02484419228218,20.8380143189117,18.6246735960192,14.9544906760458,2.22548106945558,4.7609188134483,4.43681982454325,11.8595586224196,10.6715375533337,24.7472422252385,21.7550599764734,27.7087244828979,25.166409283546,32.6585559523321,0.829516898467821,2.56511282830212,1.47227472945967,13.4255962669788,14.3564551618549,2.69479758272899,1.34183659425531,1.83843757322004,5.50579404996943,8.81042632787795,7.83393319606842,4.48413378282659,2.10421580285542,4.68822033501084,10.0505879640497,10.1297269805702,9.32069311438542,8.2496003932627,9.681274294339,6.33758115806022,29.0788582399427,49.5749434300513,13.9134954576805,24.0918685554788,19.039197343817,22.1278308571505,20.7928453583254,27.7776670000348,22.8924404814756,21.1333599996792,38.1885426766217,36.0406366000547,22.3941037444922,8.98285341900225,2.54805239706646,0,6.71122227134764,7.60079596425296,11.62706223534,29.1168893283603,6.47344709117929,11.7269289861212,9.54169297213747,11.5696881758614,10.3776973765226,10.5505848386836,11.8764594207062,19.8553214300887,16.5620628382031,19.9547112549478,33.6152009740952,12.2942805960031,17.6673214768315,16.9706338597328,14.9113408974498,2.34224637609238,5.44561437714983,19.9256503062701,3.47463861067169,2.99951365496704,3.43089613097275,11.833460512981,9.15001205637253,2.89005009859588,9.03886464999838,9.71718737855256,11.0127663616567,9.89671704713322,9.67473956578005,19.5318943857846,22.2396027421634,13.6787206326208,5.72529949035896,9.42598628177239,4.68161537493908,5.57607825992146,6.53150391852747,7.43059577652129,6.46541899462129,8.79591460512653,8.62271971731369,6.05139456537022,4.22282697993477,5.47989331068937,4.44875598760957,4.87553033131033,5.76189981942242,7.76233640592123,4.91549231119264,2.83082697826187,3.6941254921427,5.79952163099405,7.50483391939508,9.54328925743379,4.49814997611899,4.32881309844288,7.25055430570678,6.0458825635106,8.04820204198858,9.69152341647507,8.06343264576054,8.8650430602711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| ||
|EntrezGene=74167 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q8BVU5 | |||
|association_with_transcript=0bp_to_NM_028794,uc008yka.1_5end | |||
|description=CAGE_peak_2_at_Nudt9_5end | |||
|id=chr5:104475999..104476063,+ | |||
|ontology_enrichment_celltype=CL:0000333!1.81e-07!10;CL:0000095!1.81e-07!10;CL:0000243!1.81e-07!10;CL:0000123!1.81e-07!10;CL:0000125!1.81e-07!10;CL:0000030!1.81e-07!10;CL:0000339!1.81e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,1.81e-07,10;CL:0000095,1.81e-07,10;CL:0000243,1.81e-07,10;CL:0000123,1.81e-07,10;CL:0000125,1.81e-07,10;CL:0000030,1.81e-07,10;CL:0000339,1.81e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!4.00e-10!47;UBERON:0005172!5.09e-10!49;UBERON:0005173!5.09e-10!49;UBERON:0002417!5.09e-10!49;UBERON:0000916!5.09e-10!49;UBERON:0009854!2.33e-09!23;UBERON:0009856!2.33e-09!23;UBERON:0002107!3.34e-09!22;UBERON:0007499!3.34e-09!22;UBERON:0006925!3.34e-09!22;UBERON:0009497!3.34e-09!22;UBERON:0000015!3.34e-09!22;UBERON:0002423!3.34e-09!22;UBERON:0006235!3.34e-09!22;UBERON:0008835!3.34e-09!22;UBERON:0003894!3.34e-09!22;UBERON:0004161!3.34e-09!22;UBERON:0008836!3.34e-09!22;UBERON:0002365!1.42e-08!25;UBERON:0002330!1.42e-08!25;UBERON:0003914!3.19e-08!47;UBERON:0009569!5.18e-08!66;UBERON:0002100!1.04e-07!98;UBERON:0005177!5.62e-07!85;UBERON:0000466!9.79e-07!79 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,5.09e-10,49;UBERON:0005173,5.09e-10,49;UBERON:0002417,5.09e-10,49;UBERON:0000916,5.09e-10,49;UBERON:0003104,5.89e-10,61;UBERON:0009142,5.89e-10,61;UBERON:0005256,1.12e-09,45;UBERON:0009854,2.33e-09,23;UBERON:0009856,2.33e-09,23;UBERON:0002107,3.34e-09,22;UBERON:0007499,3.34e-09,22;UBERON:0006925,3.34e-09,22;UBERON:0009497,3.34e-09,22;UBERON:0000015,3.34e-09,22;UBERON:0002423,3.34e-09,22;UBERON:0006235,3.34e-09,22;UBERON:0008835,3.34e-09,22;UBERON:0003894,3.34e-09,22;UBERON:0004161,3.34e-09,22;UBERON:0008836,3.34e-09,22;UBERON:0002365,1.42e-08,25;UBERON:0002330,1.42e-08,25;UBERON:0003914,3.19e-08,47;UBERON:0005409,3.61e-08,47;UBERON:0009569,5.18e-08,66;UBERON:0002100,3.39e-07,90;UBERON:0000160,6.73e-07,31;UBERON:0005177,6.85e-07,79 | |||
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| |||
|short_description=p2@Nudt9 | |||
}} |
Revision as of 05:46, 14 September 2013
Short description: | p2@Nudt9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nudt9_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_NM_028794, uc008yka.1_5end |
EntrezGene: | Nudt9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 1.81e-07 | 10 |
neuron associated cell | 1.81e-07 | 10 |
glial cell (sensu Vertebrata) | 1.81e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 1.81e-07 | 10 |
glial cell | 1.81e-07 | 10 |
glioblast | 1.81e-07 | 10 |
glioblast (sensu Vertebrata) | 1.81e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
abdomen element | 5.09e-10 | 49 |
abdominal segment element | 5.09e-10 | 49 |
abdominal segment of trunk | 5.09e-10 | 49 |
abdomen | 5.09e-10 | 49 |
mesenchyme | 5.89e-10 | 61 |
entire embryonic mesenchyme | 5.89e-10 | 61 |
trunk mesenchyme | 1.12e-09 | 45 |
digestive tract diverticulum | 2.33e-09 | 23 |
sac | 2.33e-09 | 23 |
liver | 3.34e-09 | 22 |
epithelial sac | 3.34e-09 | 22 |
digestive gland | 3.34e-09 | 22 |
epithelium of foregut-midgut junction | 3.34e-09 | 22 |
anatomical boundary | 3.34e-09 | 22 |
hepatobiliary system | 3.34e-09 | 22 |
foregut-midgut junction | 3.34e-09 | 22 |
hepatic diverticulum | 3.34e-09 | 22 |
liver primordium | 3.34e-09 | 22 |
septum transversum | 3.34e-09 | 22 |
liver bud | 3.34e-09 | 22 |
exocrine gland | 1.42e-08 | 25 |
exocrine system | 1.42e-08 | 25 |
epithelial tube | 3.19e-08 | 47 |
gastrointestinal system | 3.61e-08 | 47 |
subdivision of trunk | 5.18e-08 | 66 |
trunk | 3.39e-07 | 90 |
intestine | 6.73e-07 | 31 |
trunk region element | 6.85e-07 | 79 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.