FFCP PHASE1:Mm9::chr14:56262143..56262219,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74140|HGNC=|MCL_coexpression_id=436|UniProt=Q9DBU0,D3Z6X7,D3YYW1,D6RGM8|association_with_transcript=0bp_to_ENSMUST00000002391,ENSMUST00000121791,ENSMUST00000121937,ENSMUST00000127473,ENSMUST00000133707,ENSMUST00000149726,uc007tzs.1,uc007tzv.1_5end|description=CAGE_peak_1_at_Tm9sf1_5end|id=chr14:56262143..56262219,-|ontology_enrichment_celltype=CL:0000066!1.40e-07!25|ontology_enrichment_celltype_v019_2=CL:0000066,1.40e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!1.40e-13!59;UBERON:0000160!1.56e-13!43;UBERON:0004119!3.30e-12!130;UBERON:0000925!3.30e-12!130;UBERON:0006595!3.30e-12!130;UBERON:0001007!2.05e-11!128;UBERON:0001555!2.05e-11!128;UBERON:0007026!2.05e-11!128;UBERON:0002100!2.36e-11!98;UBERON:0004921!1.14e-10!126;UBERON:0004185!1.14e-10!126;UBERON:0005177!4.43e-09!85;UBERON:0009569!3.59e-08!66;UBERON:0000466!7.95e-08!79;UBERON:0000481!1.01e-07!230;UBERON:0005256!1.13e-07!47;UBERON:0000926!1.45e-07!193;UBERON:0004120!1.45e-07!193;UBERON:0006603!1.45e-07!193;UBERON:0003104!1.84e-07!131;UBERON:0009142!1.84e-07!131;UBERON:0000344!7.40e-07!15;UBERON:0004923!9.01e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.47e-13,90;UBERON:0005177,1.58e-11,79;UBERON:0005409,8.54e-10,47;UBERON:0000160,8.99e-10,31;UBERON:0004119,9.70e-09,118;UBERON:0000925,9.70e-09,118;UBERON:0006595,9.70e-09,118;UBERON:0003104,2.76e-08,61;UBERON:0009142,2.76e-08,61;UBERON:0009569,3.59e-08,66;UBERON:0001007,4.55e-08,116;UBERON:0001555,4.55e-08,116;UBERON:0007026,4.55e-08,116;UBERON:0004921,1.92e-07,114;UBERON:0005256,2.25e-07,45;UBERON:0000344,7.40e-07,15;UBERON:0004923,9.01e-07,24|phase1_expression=41.3184025530368,93.1764338397094,92.3648455960758,104.652617112163,113.202434967874,44.152248512827,44.1527890725544,27.3741445696142,4.78681655315667,7.2560003159818,13.8686554262659,14.3589886191606,27.9057189787865,32.782650907124,43.9704885596675,37.255449199728,55.2653883721236,25.236973228659,26.0517423850904,29.7072756258621,27.2138528483423,28.8936667994576,25.8587791247546,54.7174085953451,73.4109699414944,89.5801864019432,70.6449673700883,63.5640136423373,77.9096019771133,63.2595625697426,76.4970261760801,31.7515336729816,27.6779154413057,15.8481681015439,38.7061170466708,42.3898345664156,43.692242240147,41.016099812217,32.0347491254758,37.1701858221397,29.9998058895817,23.2235464885872,28.1596004758069,73.6496385157127,68.5308055043918,53.7791983833727,113.446744930466,66.2796475396557,79.5263981498788,75.6332307398962,53.3348266392631,66.1261796078869,22.4828692117367,23.211588544363,18.4851589528355,47.3357362306142,45.2722835103236,57.2396022427961,20.636279007679,25.9205579843296,23.4517619297286,56.2481923234759,64.9185201161132,107.538016215127,94.9311708064295,92.362414942993,81.7908301715245,89.9070834452438,19.7010263386108,25.1111045296945,29.6558195505449,32.2785612376298,37.5476519617743,22.4158162563366,20.7984672109573,30.3342199581307,29.731287869835,25.2820929408672,18.7399970572617,26.7729164092293,22.8719109006024,27.0874952689515,27.3599339021353,26.449842671489,29.3372635731475,26.8112012781038,27.1929910326287,24.9775257405903,28.6245010799436,39.6750690560624,50.1465565453903,54.2067042498273,46.9180220258348,73.3996340627431,79.9224993460633,75.7165439194497,42.4142148797891,60.8436251603666,52.9963449389852,63.6011234118612,52.1120653173718,46.1975318691544,28.028576367731,78.2173373468664,41.5662798741531,40.0308587450656,46.0027244963453,46.5870229253765,15.7952109024775,48.0952530570032,33.3091827390981,42.3207014853876,41.5107895060905,45.8196827279973,41.6264023260395,57.9322986029804,43.5063143212498,29.9320668824217,36.2690326299448,45.456484835222,30.2552880290739,37.3353944914121,46.5979403045305,31.034764483224,26.8091784721222,76.892573617786,18.3317140494058,26.9956228947033,22.4914301919325,29.3589653233452,30.652540388848,23.3717094929928,26.9427696298029,28.3844157636667,27.2202338373024,27.0942909323155,47.3553041903971,41.1787072719408,43.9737599674594,41.2466037537489,31.2289063110489,33.565707247287,29.1700650284666,31.195897291993,30.3442786214922,31.0035203089336,32.4207966976662,35.4423617912451,27.1615671095381,32.9044579492006,36.5978338261014,51.7301928529077,37.5363786454557,45.6210338144038,46.9183271010111,35.6271337605103,30.8973802417823,26.2494865257009,32.3946389310976,36.4541359662483,33.0681744573346,30.6105504483725,33.3810077175146,32.4660982383216,40.1094493507183,39.2982366628189,42.6554708225394,35.4966640796195,42.127321577851,40.5493636275365,34.3731752474428,38.3043967054371,39.9581209829712,38.5172421842267,31.1229123874908,30.0481468147511,86.5697211417551,64.2614876992413,33.4862553340317,28.5651106388339,39.1757082419164,43.563641318642,48.7007916020266,62.3940053649194,57.4180164468859,59.6210216100919,57.807098024062,63.0692016370448,60.2439029198081,53.9291645192533,60.9509300646638,62.5303598018713,44.3822888230211,34.0460567576992,33.8123207019241,38.6937522906097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| ||
|EntrezGene=74140 | |||
|HGNC= | |||
|MCL_coexpression_id=436 | |||
|UniProt=Q9DBU0,D3Z6X7,D3YYW1,D6RGM8 | |||
|association_with_transcript=0bp_to_ENSMUST00000002391,ENSMUST00000121791,ENSMUST00000121937,ENSMUST00000127473,ENSMUST00000133707,ENSMUST00000149726,uc007tzs.1,uc007tzv.1_5end | |||
|description=CAGE_peak_1_at_Tm9sf1_5end | |||
|id=chr14:56262143..56262219,- | |||
|ontology_enrichment_celltype=CL:0000066!1.40e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.40e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.40e-13!59;UBERON:0000160!1.56e-13!43;UBERON:0004119!3.30e-12!130;UBERON:0000925!3.30e-12!130;UBERON:0006595!3.30e-12!130;UBERON:0001007!2.05e-11!128;UBERON:0001555!2.05e-11!128;UBERON:0007026!2.05e-11!128;UBERON:0002100!2.36e-11!98;UBERON:0004921!1.14e-10!126;UBERON:0004185!1.14e-10!126;UBERON:0005177!4.43e-09!85;UBERON:0009569!3.59e-08!66;UBERON:0000466!7.95e-08!79;UBERON:0000481!1.01e-07!230;UBERON:0005256!1.13e-07!47;UBERON:0000926!1.45e-07!193;UBERON:0004120!1.45e-07!193;UBERON:0006603!1.45e-07!193;UBERON:0003104!1.84e-07!131;UBERON:0009142!1.84e-07!131;UBERON:0000344!7.40e-07!15;UBERON:0004923!9.01e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.47e-13,90;UBERON:0005177,1.58e-11,79;UBERON:0005409,8.54e-10,47;UBERON:0000160,8.99e-10,31;UBERON:0004119,9.70e-09,118;UBERON:0000925,9.70e-09,118;UBERON:0006595,9.70e-09,118;UBERON:0003104,2.76e-08,61;UBERON:0009142,2.76e-08,61;UBERON:0009569,3.59e-08,66;UBERON:0001007,4.55e-08,116;UBERON:0001555,4.55e-08,116;UBERON:0007026,4.55e-08,116;UBERON:0004921,1.92e-07,114;UBERON:0005256,2.25e-07,45;UBERON:0000344,7.40e-07,15;UBERON:0004923,9.01e-07,24 | |||
|phase1_expression=41.3184025530368,93.1764338397094,92.3648455960758,104.652617112163,113.202434967874,44.152248512827,44.1527890725544,27.3741445696142,4.78681655315667,7.2560003159818,13.8686554262659,14.3589886191606,27.9057189787865,32.782650907124,43.9704885596675,37.255449199728,55.2653883721236,25.236973228659,26.0517423850904,29.7072756258621,27.2138528483423,28.8936667994576,25.8587791247546,54.7174085953451,73.4109699414944,89.5801864019432,70.6449673700883,63.5640136423373,77.9096019771133,63.2595625697426,76.4970261760801,31.7515336729816,27.6779154413057,15.8481681015439,38.7061170466708,42.3898345664156,43.692242240147,41.016099812217,32.0347491254758,37.1701858221397,29.9998058895817,23.2235464885872,28.1596004758069,73.6496385157127,68.5308055043918,53.7791983833727,113.446744930466,66.2796475396557,79.5263981498788,75.6332307398962,53.3348266392631,66.1261796078869,22.4828692117367,23.211588544363,18.4851589528355,47.3357362306142,45.2722835103236,57.2396022427961,20.636279007679,25.9205579843296,23.4517619297286,56.2481923234759,64.9185201161132,107.538016215127,94.9311708064295,92.362414942993,81.7908301715245,89.9070834452438,19.7010263386108,25.1111045296945,29.6558195505449,32.2785612376298,37.5476519617743,22.4158162563366,20.7984672109573,30.3342199581307,29.731287869835,25.2820929408672,18.7399970572617,26.7729164092293,22.8719109006024,27.0874952689515,27.3599339021353,26.449842671489,29.3372635731475,26.8112012781038,27.1929910326287,24.9775257405903,28.6245010799436,39.6750690560624,50.1465565453903,54.2067042498273,46.9180220258348,73.3996340627431,79.9224993460633,75.7165439194497,42.4142148797891,60.8436251603666,52.9963449389852,63.6011234118612,52.1120653173718,46.1975318691544,28.028576367731,78.2173373468664,41.5662798741531,40.0308587450656,46.0027244963453,46.5870229253765,15.7952109024775,48.0952530570032,33.3091827390981,42.3207014853876,41.5107895060905,45.8196827279973,41.6264023260395,57.9322986029804,43.5063143212498,29.9320668824217,36.2690326299448,45.456484835222,30.2552880290739,37.3353944914121,46.5979403045305,31.034764483224,26.8091784721222,76.892573617786,18.3317140494058,26.9956228947033,22.4914301919325,29.3589653233452,30.652540388848,23.3717094929928,26.9427696298029,28.3844157636667,27.2202338373024,27.0942909323155,47.3553041903971,41.1787072719408,43.9737599674594,41.2466037537489,31.2289063110489,33.565707247287,29.1700650284666,31.195897291993,30.3442786214922,31.0035203089336,32.4207966976662,35.4423617912451,27.1615671095381,32.9044579492006,36.5978338261014,51.7301928529077,37.5363786454557,45.6210338144038,46.9183271010111,35.6271337605103,30.8973802417823,26.2494865257009,32.3946389310976,36.4541359662483,33.0681744573346,30.6105504483725,33.3810077175146,32.4660982383216,40.1094493507183,39.2982366628189,42.6554708225394,35.4966640796195,42.127321577851,40.5493636275365,34.3731752474428,38.3043967054371,39.9581209829712,38.5172421842267,31.1229123874908,30.0481468147511,86.5697211417551,64.2614876992413,33.4862553340317,28.5651106388339,39.1757082419164,43.563641318642,48.7007916020266,62.3940053649194,57.4180164468859,59.6210216100919,57.807098024062,63.0692016370448,60.2439029198081,53.9291645192533,60.9509300646638,62.5303598018713,44.3822888230211,34.0460567576992,33.8123207019241,38.6937522906097,39.372354895028,43.9751590712297,55.1422603723524,62.7343128913309,59.9735140354052,58.2434613710899,64.0337674508242,33.3690211432188,40.2945939982066,36.2028000939615,40.1663040349236,50.4060263882551,47.6150342831255,37.1128017311546,34.2105328495325,43.3807032837169,35.9420516318386,53.5882964642645,53.982517448819,58.3457208057828,58.3041593946215,56.445891999514,50.8071272958163,39.2247222364903,36.6671196994558,40.3993304144948,38.9585812158913,39.8664892711521,40.2293753097363,44.6856053594359,47.6058135200697,43.1856144815111,42.2555136942341,45.3901381762594,49.2152198317802,46.1430496875022,39.2057338242108,48.4076058598651,61.4705341273795,49.9445510811566,27.6147014779002,26.7242645430223,25.245981588008,28.2767438468898,30.2887890639606,26.5498346121714,34.0368968417822,32.4997565215471,35.6477878531831,23.7784285862619,38.0522059574401,37.4087498126479,36.3664755710802,25.0630626809009,43.5756061589385,53.2416154965093,46.2598964564156,46.1916344323099,65.0451177865818,35.4459728786273,54.1159166966904,52.6208172518956,70.8724542913855,60.8721592928976,50.1350888746349,42.5334463488681,49.5531355954763,62.8913148292274,76.9555842597491,64.9753922463577,37.1079170271629,28.449652856947,45.2755393239641,37.9376552005918,36.3547478966661,39.0627710548535,40.1499610269175,41.7116980287001,59.137270432055,67.150766463831,63.953235435939,29.6795255294664,37.621211420146,38.4796461041634,37.602288360988,32.9923208487573,52.758031430003,24.2907145633768,42.3759784378675,39.007118045049,33.3350149265481,45.7735350521399,34.1735569302563,40.722514830761,21.0773253192381,22.8120867287563,18.1041965683795,59.189578316937,38.7511592136891,42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| |||
|short_description=p1@Tm9sf1 | |||
}} | |||
Revision as of 02:33, 13 September 2013
| Short description: | p1@Tm9sf1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Tm9sf1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:436 |
| Association with transcript: | 0bp_to_ENSMUST00000002391, ENSMUST00000121791, ENSMUST00000121937, ENSMUST00000127473, ENSMUST00000133707, ENSMUST00000149726, uc007tzs.1, uc007tzv.1_5end |
| EntrezGene: | Tm9sf1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.40e-07 | 25 |
| Ontology term | p-value | n |
|---|---|---|
| trunk | 1.47e-13 | 90 |
| trunk region element | 1.58e-11 | 79 |
| gastrointestinal system | 8.54e-10 | 47 |
| intestine | 8.99e-10 | 31 |
| endoderm-derived structure | 9.70e-09 | 118 |
| endoderm | 9.70e-09 | 118 |
| presumptive endoderm | 9.70e-09 | 118 |
| mesenchyme | 2.76e-08 | 61 |
| entire embryonic mesenchyme | 2.76e-08 | 61 |
| subdivision of trunk | 3.59e-08 | 66 |
| digestive system | 4.55e-08 | 116 |
| digestive tract | 4.55e-08 | 116 |
| primitive gut | 4.55e-08 | 116 |
| subdivision of digestive tract | 1.92e-07 | 114 |
| trunk mesenchyme | 2.25e-07 | 45 |
| mucosa | 7.40e-07 | 15 |
| organ component layer | 9.01e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
