FFCP PHASE1:Mm9::chr11:96777762..96777845,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=80280|HGNC=|UniProt=Q99LM2,D6RJ46,A2A6E3,Q3TSS9|association_with_transcript=0bp_to_ENSMUST00000103152,ENSMUST00000134732,NM_030248,uc007lcv.1,uc011ydp.1_5end|description=CAGE_peak_1_at_Cdk5rap3_5end|id=chr11:96777762..96777845,-|ontology_enrichment_celltype=CL:0000063!5.35e-07!66;CL:0000066!6.47e-07!25|ontology_enrichment_celltype_v019_2=CL:0000066,6.47e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.60e-11!43;UBERON:0001007!3.00e-11!128;UBERON:0001555!3.00e-11!128;UBERON:0007026!3.00e-11!128;UBERON:0004119!6.53e-11!130;UBERON:0000925!6.53e-11!130;UBERON:0006595!6.53e-11!130;UBERON:0004921!1.87e-10!126;UBERON:0004185!1.87e-10!126;UBERON:0005409!3.38e-10!59;UBERON:0005256!1.15e-08!47;UBERON:0002365!8.71e-08!25;UBERON:0002330!8.71e-08!25;UBERON:0000344!1.06e-07!15;UBERON:0009854!6.13e-07!23;UBERON:0009856!6.13e-07!23;UBERON:0001242!9.53e-07!13;UBERON:0000060!9.53e-07!13;UBERON:0001262!9.53e-07!13;UBERON:0004786!9.53e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0005256,1.29e-09,45;UBERON:0000160,2.56e-08,31;UBERON:0001007,3.40e-08,116;UBERON:0001555,3.40e-08,116;UBERON:0007026,3.40e-08,116;UBERON:0004119,6.61e-08,118;UBERON:0000925,6.61e-08,118;UBERON:0006595,6.61e-08,118;UBERON:0002365,8.71e-08,25;UBERON:0002330,8.71e-08,25;UBERON:0000344,1.06e-07,15;UBERON:0004921,1.62e-07,114;UBERON:0002100,2.97e-07,90;UBERON:0005409,4.05e-07,47;UBERON:0009854,6.13e-07,23;UBERON:0009856,6.13e-07,23;UBERON:0001242,9.53e-07,13;UBERON:0001262,9.53e-07,13;UBERON:0004786,9.53e-07,13|phase1_expression=10.089377367602,49.2055324771499,36.8549383905524,38.4129548359674,37.0662840160297,27.0285627778143,29.9024179962273,10.4589891987677,4.36445038670167,4.91535505276186,7.19115466547121,5.02564601670619,9.92964233600993,12.0640155338216,13.3243904726265,12.755941845559,22.3859801001007,15.1421839371954,14.671244395814,14.004858509335,19.6450000248971,12.4113689001107,14.6271881917804,36.9582496652769,31.8878900683366,37.3250776674763,34.0301976965669,36.845580789287,45.4155972500734,32.763916868791,33.9247681302616,26.6712882853045,23.9875267157982,31.6963362030877,26.8632006368685,21.7767385419625,22.2544598325982,21.7636447983192,17.1893775795236,24.6056159667685,17.0587131528994,17.0761371239611,16.0218416500281,27.1937126827247,28.9938023287812,17.8040349596831,26.6013057078333,40.7707042431435,59.7546417037763,47.0520355759766,46.335505557995,60.3760770332881,12.9192606664457,9.42970784614748,17.8129713545506,25.7259436035947,31.805211833202,30.4246534443691,1.41621522601718,2.64495489636016,1.90149421051854,28.124096161738,42.6861502133347,22.497492932035,29.6659908770092,19.1829631035447,29.9600110518405,46.4904149439081,6.11768712620018,4.86021377994086,4.6271491497304,3.42781181284564,5.30084498283872,4.16468717330844,4.50473713785711,3.67687514644008,18.7196997698961,14.6840438797966,11.6740965274745,2.2420668914133,2.37867873366265,1.56274011167028,15.355064945076,15.1945904708554,15.1270265299042,4.71405736757868,3.84403538157578,2.05039390407831,14.2365243466386,28.4149066001514,12.1743085254705,30.9752595713299,32.638624017972,66.3834925714515,55.2309954830519,52.8671726774856,25.4204400438471,21.4742206448353,19.2241643406123,20.4936953215997,8.02807492727079,16.6824420638613,20.3844191765317,14.2213340630666,23.8140145112336,26.3494260094103,20.7265022456061,27.8608666514506,13.4647699496529,17.0708459924548,9.36820764537134,16.4411358288556,16.1430848079241,19.2924979907357,11.9940481278419,26.5156507705615,9.14621380617183,15.1829324765907,18.5768215909474,16.6619855445831,17.2256384399107,28.6076399349781,27.9587641827183,6.44117753425404,9.63454851341893,29.377561348988,23.6035795276663,20.3966928537759,24.9057645063207,10.9347166765521,6.8625090422794,1.50785222535437,7.99591872884472,9.97290283588289,8.72709787150152,9.08551073179443,9.47106083807942,22.8908825922571,41.95197789999,13.4682787767343,3.6433724029557,5.74755261083682,4.50155324513373,8.59017461663576,4.35433594568498,6.27757229395764,7.58983968933804,11.3829483125167,2.80238390812695,1.89106080167819,2.99116911078713,7.23345917010997,7.78532297831674,12.8853301613202,16.8741351854514,4.77682240364384,26.6841011179029,28.8229655968481,29.8371674365372,3.72826390563903,4.92504725960302,5.76198596675248,6.39210786080068,9.83821158737019,9.87309522479221,9.06882384526591,10.7309360559848,14.0118410840603,13.000228143165,16.7450813360677,14.3491792896165,14.9123987173839,16.2467085315377,15.4337381574428,9.04246778825747,2.77842453424068,42.9544417878937,31.2051668662982,1.70630600428187,2.55460339046482,9.14958975386863,16.7397325437374,20.4587800337281,21.3052701246066,31.3189180619378,27.8341233483578,27.8982081768299,29.047644918008,33.3388588973695,28.7622210769351,33.2852596807029,30.4686148079182,3.22435431620239,5.59817711787671,2.25415471346161,5.7022371796688,7.5641469995374,5.96154469067708,13.4693824074668,18.5988786454299,23.2358117205235,19.4967518996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| ||
|EntrezGene=80280 | |||
|HGNC= | |||
|UniProt=Q99LM2,D6RJ46,A2A6E3,Q3TSS9 | |||
|association_with_transcript=0bp_to_ENSMUST00000103152,ENSMUST00000134732,NM_030248,uc007lcv.1,uc011ydp.1_5end | |||
|description=CAGE_peak_1_at_Cdk5rap3_5end | |||
|id=chr11:96777762..96777845,- | |||
|ontology_enrichment_celltype=CL:0000063!5.35e-07!66;CL:0000066!6.47e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.47e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.60e-11!43;UBERON:0001007!3.00e-11!128;UBERON:0001555!3.00e-11!128;UBERON:0007026!3.00e-11!128;UBERON:0004119!6.53e-11!130;UBERON:0000925!6.53e-11!130;UBERON:0006595!6.53e-11!130;UBERON:0004921!1.87e-10!126;UBERON:0004185!1.87e-10!126;UBERON:0005409!3.38e-10!59;UBERON:0005256!1.15e-08!47;UBERON:0002365!8.71e-08!25;UBERON:0002330!8.71e-08!25;UBERON:0000344!1.06e-07!15;UBERON:0009854!6.13e-07!23;UBERON:0009856!6.13e-07!23;UBERON:0001242!9.53e-07!13;UBERON:0000060!9.53e-07!13;UBERON:0001262!9.53e-07!13;UBERON:0004786!9.53e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,1.29e-09,45;UBERON:0000160,2.56e-08,31;UBERON:0001007,3.40e-08,116;UBERON:0001555,3.40e-08,116;UBERON:0007026,3.40e-08,116;UBERON:0004119,6.61e-08,118;UBERON:0000925,6.61e-08,118;UBERON:0006595,6.61e-08,118;UBERON:0002365,8.71e-08,25;UBERON:0002330,8.71e-08,25;UBERON:0000344,1.06e-07,15;UBERON:0004921,1.62e-07,114;UBERON:0002100,2.97e-07,90;UBERON:0005409,4.05e-07,47;UBERON:0009854,6.13e-07,23;UBERON:0009856,6.13e-07,23;UBERON:0001242,9.53e-07,13;UBERON:0001262,9.53e-07,13;UBERON:0004786,9.53e-07,13 | |||
|phase1_expression=10.089377367602,49.2055324771499,36.8549383905524,38.4129548359674,37.0662840160297,27.0285627778143,29.9024179962273,10.4589891987677,4.36445038670167,4.91535505276186,7.19115466547121,5.02564601670619,9.92964233600993,12.0640155338216,13.3243904726265,12.755941845559,22.3859801001007,15.1421839371954,14.671244395814,14.004858509335,19.6450000248971,12.4113689001107,14.6271881917804,36.9582496652769,31.8878900683366,37.3250776674763,34.0301976965669,36.845580789287,45.4155972500734,32.763916868791,33.9247681302616,26.6712882853045,23.9875267157982,31.6963362030877,26.8632006368685,21.7767385419625,22.2544598325982,21.7636447983192,17.1893775795236,24.6056159667685,17.0587131528994,17.0761371239611,16.0218416500281,27.1937126827247,28.9938023287812,17.8040349596831,26.6013057078333,40.7707042431435,59.7546417037763,47.0520355759766,46.335505557995,60.3760770332881,12.9192606664457,9.42970784614748,17.8129713545506,25.7259436035947,31.805211833202,30.4246534443691,1.41621522601718,2.64495489636016,1.90149421051854,28.124096161738,42.6861502133347,22.497492932035,29.6659908770092,19.1829631035447,29.9600110518405,46.4904149439081,6.11768712620018,4.86021377994086,4.6271491497304,3.42781181284564,5.30084498283872,4.16468717330844,4.50473713785711,3.67687514644008,18.7196997698961,14.6840438797966,11.6740965274745,2.2420668914133,2.37867873366265,1.56274011167028,15.355064945076,15.1945904708554,15.1270265299042,4.71405736757868,3.84403538157578,2.05039390407831,14.2365243466386,28.4149066001514,12.1743085254705,30.9752595713299,32.638624017972,66.3834925714515,55.2309954830519,52.8671726774856,25.4204400438471,21.4742206448353,19.2241643406123,20.4936953215997,8.02807492727079,16.6824420638613,20.3844191765317,14.2213340630666,23.8140145112336,26.3494260094103,20.7265022456061,27.8608666514506,13.4647699496529,17.0708459924548,9.36820764537134,16.4411358288556,16.1430848079241,19.2924979907357,11.9940481278419,26.5156507705615,9.14621380617183,15.1829324765907,18.5768215909474,16.6619855445831,17.2256384399107,28.6076399349781,27.9587641827183,6.44117753425404,9.63454851341893,29.377561348988,23.6035795276663,20.3966928537759,24.9057645063207,10.9347166765521,6.8625090422794,1.50785222535437,7.99591872884472,9.97290283588289,8.72709787150152,9.08551073179443,9.47106083807942,22.8908825922571,41.95197789999,13.4682787767343,3.6433724029557,5.74755261083682,4.50155324513373,8.59017461663576,4.35433594568498,6.27757229395764,7.58983968933804,11.3829483125167,2.80238390812695,1.89106080167819,2.99116911078713,7.23345917010997,7.78532297831674,12.8853301613202,16.8741351854514,4.77682240364384,26.6841011179029,28.8229655968481,29.8371674365372,3.72826390563903,4.92504725960302,5.76198596675248,6.39210786080068,9.83821158737019,9.87309522479221,9.06882384526591,10.7309360559848,14.0118410840603,13.000228143165,16.7450813360677,14.3491792896165,14.9123987173839,16.2467085315377,15.4337381574428,9.04246778825747,2.77842453424068,42.9544417878937,31.2051668662982,1.70630600428187,2.55460339046482,9.14958975386863,16.7397325437374,20.4587800337281,21.3052701246066,31.3189180619378,27.8341233483578,27.8982081768299,29.047644918008,33.3388588973695,28.7622210769351,33.2852596807029,30.4686148079182,3.22435431620239,5.59817711787671,2.25415471346161,5.7022371796688,7.5641469995374,5.96154469067708,13.4693824074668,18.5988786454299,23.2358117205235,19.4967518996445,29.6452627087149,14.0149888801519,13.562570662811,15.5154857545549,16.4316698324687,20.0177042594506,20.1154422907322,20.4264257590076,15.0785760900783,36.2421065408268,34.5043695665651,33.8648262378338,33.0759933501434,53.2941432468406,55.7925956053147,29.9114983245288,18.1058126363273,5.49525094134406,7.82231886921724,6.62005834523234,6.10194645550105,11.8929442783689,12.6163129669587,9.36641509717434,12.6108115284953,11.0732344824387,15.9454768657487,24.2517705779292,21.9309926969687,17.2132379711999,18.0949540727127,14.6854534631052,26.0635064700089,29.5252318546064,14.2890025089135,12.4244387787735,18.3607138821876,22.2174415939848,6.62567260774139,7.41833614163613,6.67812532971677,10.7535959078648,11.1399337041197,16.1353622549635,8.09621403349789,9.9366991689846,7.11518000303742,6.74774764485795,18.1683309066584,12.9987890677096,7.4928001302645,15.5071915594183,39.8235415019888,6.31229654002952,16.9301191900261,28.1021568836288,36.6174347172158,32.5881256820563,22.7416897988035,27.2650297108129,24.9548164869305,47.4055136903724,56.9260486304993,28.8779521094923,55.8320953436212,3.96134406868882,4.91562998374467,6.00143698088458,9.04435191575595,10.7021290561242,13.1639216481697,18.5723618959906,12.9069439435041,10.3797714723272,67.7022182028733,14.3451040059088,11.4639742954093,12.6054013099846,14.3246812803764,13.9519764783302,27.399198643206,11.4963687246516,12.3027034174454,10.5257302661243,12.9636169158798,16.5764242164128,12.9859516334974,16.2432502976631,17.5077782893671,16.2343684695443,15.8929969875087,25.7761066864081,3.63786392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| |||
|short_description=p1@Cdk5rap3 | |||
}} |
Revision as of 21:41, 12 September 2013
Short description: | p1@Cdk5rap3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cdk5rap3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000103152, ENSMUST00000134732, NM_030248, uc007lcv.1, uc011ydp.1_5end |
EntrezGene: | Cdk5rap3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.47e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 1.29e-09 | 45 |
intestine | 2.56e-08 | 31 |
digestive system | 3.40e-08 | 116 |
digestive tract | 3.40e-08 | 116 |
primitive gut | 3.40e-08 | 116 |
endoderm-derived structure | 6.61e-08 | 118 |
endoderm | 6.61e-08 | 118 |
presumptive endoderm | 6.61e-08 | 118 |
exocrine gland | 8.71e-08 | 25 |
exocrine system | 8.71e-08 | 25 |
mucosa | 1.06e-07 | 15 |
subdivision of digestive tract | 1.62e-07 | 114 |
trunk | 2.97e-07 | 90 |
gastrointestinal system | 4.05e-07 | 47 |
digestive tract diverticulum | 6.13e-07 | 23 |
sac | 6.13e-07 | 23 |
intestinal mucosa | 9.53e-07 | 13 |
wall of intestine | 9.53e-07 | 13 |
gastrointestinal system mucosa | 9.53e-07 | 13 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.